Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Forward (+)

61739227 .. 61745888

Gene Structure 6662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG453600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGATTCCTTAGCTTACATTTACAGCACAAACAACTTTGTCGGAAGGCAGACATGGGAGTTTGATTCGGATGCAGGAACTCCTGAAGAGCGAGCTGAGGTTGAAGAGGCCCGTCTTCATTACTACAACAACCGCTATCAGGTCAAGCCCAGTGGTGACATTCTTTGGCGTATGCAGGATGACAGAAAATTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

74

Amino Acids

8.76

Weight (kDa)

4.89

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	3 cut(s)	10, 41, 122
AluI	AGCT	3 cut(s)	10, 41, 122
AoxI	GGCC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	134
Bpu10I	CCTNAGC	2 cut(s)	37, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	103, 211
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	166
BsnI	GGCC	1 cut(s)	137
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	115
BspQI	GCTCTTC	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	177
Bst6I	CTCTTC	2 cut(s)	108, 126
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	37, 123
BstF5I	GGATG	2 cut(s)	103, 211
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	103, 211
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	136
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	5 cut(s)	10, 41, 122, 137, 175
CviKI_1	RGCY	5 cut(s)	10, 41, 122, 137, 175
DdeI	CTNAG	2 cut(s)	37, 123
Eam1104I	CTCTTC	2 cut(s)	108, 126
EarI	CTCTTC	2 cut(s)	108, 126
Eco57I	CTGAAG	1 cut(s)	132
FaeI	CATG	1 cut(s)	84
FaiI	YATR	2 cut(s)	82, 200
FatI	CATG	1 cut(s)	80
FokI	GGATG	2 cut(s)	110, 218
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	32, 92
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	71, 97
Hpy188III	TCNNGA	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	17, 66
HpyCH4V	TGCA	3 cut(s)	20, 101, 202
HpyF3I	CTNAG	2 cut(s)	37, 123
Hsp92II	CATG	1 cut(s)	84
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	87, 123, 152, 188, 190
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	182
MboII	GAAGA	3 cut(s)	125, 134, 143
MluCI	AATT	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	2 cut(s)	118, 127
MseI	TTAA	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	11
NlaIII	CATG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	32, 92
PspPI	GGNCC	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	136
SetI	ASST	7 cut(s)	12, 18, 28, 43, 124, 129, 171
SfaNI	GCATC	1 cut(s)	88
SgeI	CNNG	9 cut(s)	93, 114, 122, 131, 150, 179, 184, 189, 215
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	160
TasI	AATT	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	32, 92
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	184
Vha464I	CTTAAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.