MD17G1160500.v1.1

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000173
Physical Location & Seq
Forward (+)
15694687 .. 15700441
5755 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1160500.v1.1.491

Sequence Viewer

Length: 2295 bp
ATGATTGAGAAGATGTGGAGGATTAAGTTTGGAGAAGGTGCAAACGACCCCTTCTTGTTCAGCACAAACAACTTCCATGGAAGGCAGACATGGGAGTTCGACCCAGATGCAGGTACCGAGGAGGAACGAGCAGAAGTTGAAGCTGCTCGTGAGCATTTCTACCAAAATCGCTTCAAGGTCACGCCTAGCAGTGACCTCCTATGGCGTTTTCAGATTTTAAGAGAAAAAAACTTCCAACAAGAAATTCCTCCTGTAAGAATTGGGGAGGGTGAGGAGATTACATATGATCAGGCCACAGCTGCATTCAGGAGGGCTGCTACCTTCTGGAATGCCTTGCAATCACCCCACGGACATTGGCCTGCTGAAAATGCTGGCCCAAACTTTTACTTCCCTCCCTTGGTCATGGCTGCATACATTCCAGGATATCTCAATGTTATTTTCTCAGCTGAGCACAAGAAGGAAATCTTGCGGTATACATACAACCATCAGAATGAAGATGGTGGGTGGGGACTGCACATATCAGGCCCTAGTATGATGTTTACTACATGCCTTAACTACTGTATGATGCGTATTCTTGGAGAGGGCCCTGATGGTGGGCGTGACAATGCATGCGCAAGGGCACGAAAGTGGATTCTTGATCGTGGTGGTGCTTACTATTCTGCATCATGGGGAAAAACTTGGATGGCAATTCTTGGTGTGTATGACTGGGAAGGCAGCAACCCAATGCCCCCGGAATTCTGGACTGGGTCTACACTGCTTCCTTTTCATCCATCAAAAATGTTCTGCTACTGTAGGTTGACTTACCTACCTATGTCTTACTTTTACGCCACAAGATTTGTTGGCCCGATCACTCCTCTGGTTGAGGAATTGAGACAAGAAATTTACTGTGAACCTTACAGCGAAATTAACTGGTCTAAAGTGCGCCATTGGTGTGCACCGGACGATAACTACTATCCCCATGGTCGTGTACAACGTTTTATGTGGGACAGTTTTTACAATATTGCTGAGCCTCTCCTAAAACGCTGGCCCTTCAAGAAGATCAGAGACAATGCCATTCAATTCACAATTGACCAAATTCATTACGAAGATGAGAACAGTCGCTACATTACAATCGGATGTGTGGAAAAGCCATTAATGATGCTTGCTTGCTGGGCCGAGGATCCTAGTGGAGAAGCTTTCAAGAAGCATCTTCCTAGAGTTACTGATTATATCTGGCTCGGAGAGGATGGAATCAAGATGCAGAGTTTTGGAAGCCAGTCATGGGATTGTGCTCTTGTGATTCAAGCTTTGCTTGCTGGCAATCTAAATACTGAAATGGCACCTACCCTTAAGAAAGCACACGAATTTCTCAAGATATCTCAGGTGAGGGTGAATACATCTGGTGACTATCTAGCTCATTTCCGTCACGTTTCTAAGGGCGCGTGGACATTCTCTGACCGTGACCATGGATGGCAAGTGTCGGATTGTACTGCAGAAGCACTGAGGTGTTGCTGCATTTTCGCAAATATGTCCCCAGAACTCGTTGGTGAGCCAATGGAAGCTGAGTGTATGTATGATGCTGTCAATGTCATCTTGACTCTTCAGAGTCCAAATGGTGGTGTATCAGCCTGGGAGCCAACAGGAGCACCAAAATGGTTGGAGTGGCTCAACCCTGTGGAGTTTCTTGAGGACCTTGTCATTGAGTACGAGTACATCGAATGCACTTCATCTTCGATCCAGGCCTTAACTTTGTTTAGGAAGTTGTACCCTGGCCATAGAAGGAAGGAGATCAACAATTTCATCACGAGGGCAGCAGACTACATTGAAGACATACAGTACCCTGATGGCTCATGGTATGGAAACTGGGGAATCTGCTTCGTGTATGGTACATGGTTCGCAATCAAAGGGCTGGAGGCCGCTGGTAGGACATACAACAACTGCGAGGCAGTGCGCAAAGGTGTTGACTTTTTGCTAAAAACACAAAGGGCAGATGGTGGCTGGGGAGAGCACTACACCTCATGCACAAACAAGAAATATACAGCTCAAGATAGCACAAATTTGGTCCAAACTGCACTCGGATTAATGGGTCTGATTCATGGTCGACAGGCTGAGAGAGATCCAACTCCTATTCACCGTGCTGCTGCGGTGTTAATGAAAGGTCAATTGGATGATGGCGATTTCCCACAACAGGAACTGATGGGAGTTTTTATGAGGAATGCTATGTTGCACTATGCAGCATACAGAAACATCTTCCCATTGTGGGCTCTTGGAGAATACCGCACGCTGGTTTCGTTGCCTATAAAAAAGATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

765

Amino Acids

87.93

Weight (kDa)

5.78

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 106 - 399 1.7e-30 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 420 - 753 2.8e-49 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 613, 1931
Acc36I ACCTGC 1 cut(s) 101
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 2 cut(s) 113, 1318
AccB7I CCANNNNNTGG 1 cut(s) 1595
AccI GTMKAC 3 cut(s) 473, 749, 2080
AccII CGCG 1 cut(s) 1421
AciI CCGC 4 cut(s) 469, 1896, 2123, 2257
AclI AACGTT 1 cut(s) 973
AclWI GGATC 4 cut(s) 1154, 1167, 1708, 2090
AcoI YGGCCR 1 cut(s) 1750
AcsI RAATTY 6 cut(s) 243, 734, 879, 1074, 1343, 2035
AcuI CTGAAG 1 cut(s) 1565
AfaI GTAC 8 cut(s) 115, 969, 1468, 1685, 1691, 1745, 1817, 1867
AfiI CCNNNNNNNGG 9 cut(s) 110, 397, 593, 1261, 1595, 1902, 2167, 2239, 2263
AflII CTTAAG 1 cut(s) 1328
AgsI TTSAA 7 cut(s) 140, 175, 1033, 1058, 1180, 1283, 1805
AjnI CCWGG 4 cut(s) 418, 1607, 1716, 1747
AjuI GAANNNNNNNTTGG 4 cut(s) 228, 260, 2126, 2158
AleI CACNNNNGTG 2 cut(s) 625, 1483
AluBI AGCT 8 cut(s) 143, 299, 446, 1175, 1286, 1394, 1541, 2021
AluI AGCT 8 cut(s) 143, 299, 446, 1175, 1286, 1394, 1541, 2021
Alw21I GWGCWC 5 cut(s) 453, 937, 1273, 1627, 1989
Alw26I GTCTC 2 cut(s) 865, 1038
Alw44I GTGCAC 1 cut(s) 933
AlwI GGATC 4 cut(s) 1154, 1167, 1708, 2090
AlwNI CAGNNNCTG 1 cut(s) 2173
ApaI GGGCCC 1 cut(s) 587
ApaLI GTGCAC 1 cut(s) 933
ApoI RAATTY 6 cut(s) 243, 734, 879, 1074, 1343, 2035
AseI ATTAAT 2 cut(s) 1133, 2060
Asp718I GGTACC 1 cut(s) 113
AspLEI GCGC 4 cut(s) 614, 924, 1421, 1932
AspS9I GGNCC 9 cut(s) 374, 524, 583, 584, 842, 1026, 1152, 1669, 2041
AsuC2I CCSGG 1 cut(s) 731
AsuHPI GGTGA 7 cut(s) 281, 333, 1375, 1381, 1394, 1538, 2102
AvaII GGWCC 2 cut(s) 1669, 2041
BaeGI GKGCMC 3 cut(s) 587, 622, 937
BalI TGGCCA 1 cut(s) 1752
BamHI GGATCC 1 cut(s) 1159
BanI GGYRCC 2 cut(s) 113, 1318
BanII GRGCYC 2 cut(s) 587, 2245
BauI CACGAG 2 cut(s) 147, 1783
BbsI GAAGAC 1 cut(s) 1812
Bbv12I GWGCWC 5 cut(s) 453, 937, 1273, 1627, 1989
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciT130I CCWGG 4 cut(s) 420, 1609, 1718, 1749
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 1 cut(s) 731
BcoDI GTCTC 2 cut(s) 865, 1038
BfaI CTAG 5 cut(s) 186, 528, 1164, 1194, 1391
BfmI CTRYAG 2 cut(s) 790, 1470
BfrI CTTAAG 1 cut(s) 1328
BfuAI ACCTGC 1 cut(s) 101
BlpI GCTNAGC 2 cut(s) 447, 1005
Bme1390I CCNGG 5 cut(s) 420, 731, 1609, 1718, 1749
Bme18I GGWCC 2 cut(s) 1669, 2041
BmgT120I GGNCC 9 cut(s) 374, 524, 583, 584, 842, 1026, 1152, 1669, 2041
BmiI GGNNCC 5 cut(s) 115, 585, 1161, 1320, 1614
BmrFI CCNGG 5 cut(s) 420, 731, 1609, 1718, 1749
BmrI ACTGGG 3 cut(s) 715, 753, 1852
BmsI GCATC 7 cut(s) 97, 555, 671, 1128, 1195, 1227, 1546
BmuI ACTGGG 3 cut(s) 715, 753, 1852
BpiI GAAGAC 1 cut(s) 1812
BpmI CTGGAG 1 cut(s) 1910
Bpu1102I GCTNAGC 2 cut(s) 447, 1005
BpuEI CTTGAG 3 cut(s) 1334, 1685, 2007
BpuMI CCSGG 1 cut(s) 731
BsaWI WCCGGW 1 cut(s) 937
Bsc4I CCNNNNNNNGG 9 cut(s) 110, 397, 593, 1261, 1595, 1902, 2167, 2239, 2263
Bse1I ACTGG 5 cut(s) 710, 748, 914, 1255, 1847
BseBI CCWGG 4 cut(s) 420, 1609, 1718, 1749
BseGI GGATG 6 cut(s) 687, 766, 1121, 1231, 1454, 2152
BseLI CCNNNNNNNGG 9 cut(s) 110, 397, 593, 1261, 1595, 1902, 2167, 2239, 2263
BseMII CTCAG 7 cut(s) 438, 456, 996, 1373, 1472, 1533, 2079
BseNI ACTGG 5 cut(s) 710, 748, 914, 1255, 1847
BseRI GAGGAG 3 cut(s) 134, 287, 843
BseSI GKGCMC 3 cut(s) 587, 622, 937
BseYI CCCAGC 2 cut(s) 1149, 1977
BsgI GTGCAG 2 cut(s) 497, 2034
Bsh1236I CGCG 1 cut(s) 1421
BshNI GGYRCC 2 cut(s) 113, 1318
BsiHKAI GWGCWC 5 cut(s) 453, 937, 1273, 1627, 1989
BsiSI CCGG 2 cut(s) 731, 938
BslFI GGGAC 3 cut(s) 522, 998, 1495
BslI CCNNNNNNNGG 9 cut(s) 110, 397, 593, 1261, 1595, 1902, 2167, 2239, 2263
BsmAI GTCTC 2 cut(s) 865, 1038
BsmFI GGGAC 3 cut(s) 522, 998, 1495
BsmI GAATGC 4 cut(s) 302, 334, 1703, 2200
Bsp120I GGGCCC 1 cut(s) 583
Bsp1286I GDGCHC 8 cut(s) 453, 587, 622, 937, 1273, 1627, 1989, 2245
Bsp1407I TGTACA 1 cut(s) 967
Bsp143I GATC 8 cut(s) 286, 637, 846, 1038, 1159, 1713, 1767, 2095
Bsp1720I GCTNAGC 2 cut(s) 447, 1005
Bsp19I CCATGG 3 cut(s) 76, 958, 1444
BspACI CCGC 4 cut(s) 469, 1896, 2123, 2257
BspCNI CTCAG 7 cut(s) 439, 455, 997, 1372, 1473, 1534, 2080
BspFNI CGCG 1 cut(s) 1421
BspLI GGNNCC 5 cut(s) 115, 585, 1161, 1320, 1614
BspMAI CTGCAG 1 cut(s) 1474
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 4 cut(s) 1154, 1167, 1708, 2090
BspT107I GGYRCC 2 cut(s) 113, 1318
BspTI CTTAAG 1 cut(s) 1328
BsrGI TGTACA 1 cut(s) 967
BsrI ACTGG 5 cut(s) 710, 748, 914, 1255, 1847
BssMI GATC 8 cut(s) 286, 637, 846, 1038, 1159, 1713, 1767, 2095
BssNAI GTATAC 1 cut(s) 474
BssSI CACGAG 2 cut(s) 147, 1783
BssT1I CCWWGG 4 cut(s) 76, 396, 958, 1444
Bst1107I GTATAC 1 cut(s) 474
Bst2BI CACGAG 2 cut(s) 147, 1783
Bst2UI CCWGG 4 cut(s) 420, 1609, 1718, 1749
Bst4CI ACNGT 8 cut(s) 560, 791, 887, 989, 1097, 1439, 1815, 2114
Bst6I CTCTTC 1 cut(s) 1584
BstAFI CTTAAG 1 cut(s) 1328
BstAUI TGTACA 1 cut(s) 967
BstC8I GCNNGC 9 cut(s) 360, 373, 610, 1025, 1143, 1147, 1293, 1297, 2261
BstDEI CTNAG 8 cut(s) 442, 447, 1005, 1359, 1413, 1481, 1542, 2088
BstDSI CCRYGG 4 cut(s) 76, 346, 958, 1444
BstF5I GGATG 6 cut(s) 687, 766, 1121, 1231, 1454, 2152
BstFNI CGCG 1 cut(s) 1421
BstHHI GCGC 4 cut(s) 614, 924, 1421, 1932
BstKTI GATC 8 cut(s) 289, 640, 849, 1041, 1162, 1716, 1770, 2098
BstMAI GTCTC 2 cut(s) 865, 1038
BstMBI GATC 8 cut(s) 286, 637, 846, 1038, 1159, 1713, 1767, 2095
BstMWI GCNNNNNNNGC 4 cut(s) 299, 368, 1151, 1292
BstNI CCWGG 4 cut(s) 420, 1609, 1718, 1749
BstNSI RCATGY 2 cut(s) 549, 612
BstSCI CCNGG 5 cut(s) 418, 729, 1607, 1716, 1747
BstSFI CTRYAG 2 cut(s) 790, 1470
BstSLI GKGCMC 3 cut(s) 587, 622, 937
BstUI CGCG 1 cut(s) 1421
BstV2I GAAGAC 1 cut(s) 1812
BstX2I RGATCY 2 cut(s) 1159, 2095
BstYI RGATCY 2 cut(s) 1159, 2095
BstZ17I GTATAC 1 cut(s) 474
BtgI CCRYGG 4 cut(s) 76, 346, 958, 1444
BtsCI GGATG 6 cut(s) 687, 766, 1121, 1231, 1454, 2152
BtsI GCAGTG 3 cut(s) 196, 752, 1932
BtsIMutI CAGTG 4 cut(s) 196, 752, 1478, 1932
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 9 cut(s) 360, 373, 610, 1025, 1143, 1147, 1293, 1297, 2261
CaiI CAGNNNCTG 1 cut(s) 2173
CfoI GCGC 4 cut(s) 614, 924, 1421, 1932
Cfr13I GGNCC 9 cut(s) 374, 524, 583, 584, 842, 1026, 1152, 1669, 2041
Csp6I GTAC 8 cut(s) 114, 968, 1467, 1684, 1690, 1744, 1816, 1866
CspCI CAANNNNNGTGG 4 cut(s) 335, 370, 817, 852
CviQI GTAC 8 cut(s) 114, 968, 1467, 1684, 1690, 1744, 1816, 1866
DdeI CTNAG 8 cut(s) 442, 447, 1005, 1359, 1413, 1481, 1542, 2088
DpnI GATC 8 cut(s) 288, 639, 848, 1040, 1161, 1715, 1769, 2097
DpnII GATC 8 cut(s) 286, 637, 846, 1038, 1159, 1713, 1767, 2095
EaeI YGGCCR 1 cut(s) 1750
Eam1104I CTCTTC 1 cut(s) 1584
EarI CTCTTC 1 cut(s) 1584
Eco130I CCWWGG 4 cut(s) 76, 396, 958, 1444
Eco147I AGGCCT 1 cut(s) 1721
Eco24I GRGCYC 2 cut(s) 587, 2245
Eco32I GATATC 2 cut(s) 425, 1356
Eco47I GGWCC 2 cut(s) 1669, 2041
Eco57I CTGAAG 1 cut(s) 1565
EcoO109I RGGNCCY 4 cut(s) 524, 583, 584, 1669
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 4 cut(s) 418, 1607, 1716, 1747
EcoRV GATATC 2 cut(s) 425, 1356
EcoT14I CCWWGG 4 cut(s) 76, 396, 958, 1444
EcoT22I ATGCAT 1 cut(s) 610
EcoT38I GRGCYC 2 cut(s) 587, 2245
ErhI CCWWGG 4 cut(s) 76, 396, 958, 1444
FalI AAGNNNNNCTT 4 cut(s) 449, 481, 1275, 1307
FaqI GGGAC 3 cut(s) 522, 998, 1495
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 3 cut(s) 473, 749, 2080
FokI GGATG 6 cut(s) 694, 753, 1128, 1238, 1461, 2159
FriOI GRGCYC 2 cut(s) 587, 2245
FspBI CTAG 5 cut(s) 186, 528, 1164, 1194, 1391
FspI TGCGCA 2 cut(s) 613, 1931
GlaI GCGC 4 cut(s) 613, 923, 1420, 1931
GsaI CCCAGC 2 cut(s) 1153, 1981
GsuI CTGGAG 1 cut(s) 1910
HapII CCGG 2 cut(s) 731, 938
HhaI GCGC 4 cut(s) 614, 924, 1421, 1932
Hin6I GCGC 4 cut(s) 612, 922, 1419, 1930
HinP1I GCGC 4 cut(s) 612, 922, 1419, 1930
HincII GTYRAC 3 cut(s) 798, 1942, 2081
HindII GTYRAC 3 cut(s) 798, 1942, 2081
HindIII AAGCTT 2 cut(s) 1173, 1284
HinfI GANTC 7 cut(s) 631, 1230, 1279, 1576, 1585, 1848, 2071
HpaII CCGG 2 cut(s) 731, 938
HphI GGTGA 7 cut(s) 281, 333, 1375, 1381, 1394, 1538, 2102
HpyAV CCTTC 9 cut(s) 29, 61, 75, 331, 451, 704, 1039, 1752, 1756
HpyCH4III ACNGT 8 cut(s) 560, 791, 887, 989, 1097, 1439, 1815, 2114
HpyCH4IV ACGT 2 cut(s) 973, 1407
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 368, 1151, 1292
HpyF3I CTNAG 8 cut(s) 442, 447, 1005, 1359, 1413, 1481, 1542, 2088
HpySE526I ACGT 2 cut(s) 973, 1407
HspAI GCGC 4 cut(s) 612, 922, 1419, 1930
KpnI GGTACC 1 cut(s) 117
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 8 cut(s) 286, 637, 846, 1038, 1159, 1713, 1767, 2095
LmnI GCTCC 2 cut(s) 1612, 1622
LweI GCATC 7 cut(s) 97, 555, 671, 1128, 1195, 1227, 1546
MaeI CTAG 5 cut(s) 186, 528, 1164, 1194, 1391
MaeII ACGT 2 cut(s) 973, 1407
MaeIII GTNAC 7 cut(s) 178, 191, 599, 1198, 1382, 1403, 1439
MalI GATC 8 cut(s) 288, 639, 848, 1040, 1161, 1715, 1769, 2097
MboI GATC 8 cut(s) 286, 637, 846, 1038, 1159, 1713, 1767, 2095
MboII GAAGA 9 cut(s) 22, 506, 1048, 1097, 1181, 1571, 1701, 1817, 2221
MfeI CAATTG 2 cut(s) 1065, 2141
MflI RGATCY 2 cut(s) 1159, 2095
MhlI GDGCHC 8 cut(s) 453, 587, 622, 937, 1273, 1627, 1989, 2245
MlsI TGGCCA 1 cut(s) 1752
MluNI TGGCCA 1 cut(s) 1752
MlyI GAGTC 2 cut(s) 1570, 1594
MmeI TCCRAC 4 cut(s) 259, 1440, 1617, 2123
Mox20I TGGCCA 1 cut(s) 1752
Mph1103I ATGCAT 1 cut(s) 610
MscI TGGCCA 1 cut(s) 1752
MseI TTAA 9 cut(s) 24, 218, 552, 906, 1133, 1329, 1724, 2060, 2129
MslI CAYNNNNRTG 6 cut(s) 489, 625, 930, 963, 1483, 1630
Msp20I TGGCCA 1 cut(s) 1752
MspA1I CMGCKG 3 cut(s) 299, 446, 1898
MspCI CTTAAG 1 cut(s) 1328
MspI CCGG 2 cut(s) 731, 938
MspR9I CCNGG 5 cut(s) 420, 731, 1609, 1718, 1749
MunI CAATTG 2 cut(s) 1065, 2141
Mva1269I GAATGC 4 cut(s) 302, 334, 1703, 2200
MvaI CCWGG 4 cut(s) 420, 1609, 1718, 1749
MvnI CGCG 1 cut(s) 1421
MwoI GCNNNNNNNGC 4 cut(s) 299, 368, 1151, 1292
NciI CCSGG 1 cut(s) 731
NcoI CCATGG 3 cut(s) 76, 958, 1444
NdeI CATATG 1 cut(s) 283
NdeII GATC 8 cut(s) 286, 637, 846, 1038, 1159, 1713, 1767, 2095
NlaIV GGNNCC 5 cut(s) 115, 585, 1161, 1320, 1614
NmeAIII GCCGAG 1 cut(s) 1180
NmuCI GTSAC 6 cut(s) 178, 191, 599, 1382, 1403, 1439
NsbI TGCGCA 2 cut(s) 613, 1931
NsiI ATGCAT 1 cut(s) 610
NspI RCATGY 2 cut(s) 549, 612
OliI CACNNNNGTG 2 cut(s) 625, 1483
PaeI GCATGC 1 cut(s) 612
PceI AGGCCT 1 cut(s) 1721
PcsI WCGNNNNNNNCGW 3 cut(s) 970, 1692, 2267
PctI GAATGC 4 cut(s) 302, 334, 1703, 2200
PfeI GAWTC 5 cut(s) 631, 1230, 1279, 1848, 2071
PflFI GACNNNGTC 2 cut(s) 745, 1673
PflMI CCANNNNNTGG 1 cut(s) 1595
PfoI TCCNGGA 1 cut(s) 418
PleI GAGTC 2 cut(s) 1570, 1593
PpsI GAGTC 2 cut(s) 1570, 1593
PpuMI RGGWCCY 1 cut(s) 1669
PshBI ATTAAT 2 cut(s) 1133, 2060
Psp1406I AACGTT 1 cut(s) 973
Psp5II RGGWCCY 1 cut(s) 1669
Psp6I CCWGG 4 cut(s) 418, 1607, 1716, 1747
PspFI CCCAGC 2 cut(s) 1149, 1977
PspGI CCWGG 4 cut(s) 418, 1607, 1716, 1747
PspN4I GGNNCC 5 cut(s) 115, 585, 1161, 1320, 1614
PspOMI GGGCCC 1 cut(s) 583
PspPI GGNCC 9 cut(s) 374, 524, 583, 584, 842, 1026, 1152, 1669, 2041
PspPPI RGGWCCY 1 cut(s) 1669
PsrI GAACNNNNNNTAC 2 cut(s) 1085, 1117
PstI CTGCAG 1 cut(s) 1474
PstNI CAGNNNCTG 1 cut(s) 2173
PsuI RGATCY 2 cut(s) 1159, 2095
PsyI GACNNNGTC 2 cut(s) 745, 1673
PvuII CAGCTG 2 cut(s) 299, 446
RsaI GTAC 8 cut(s) 115, 969, 1468, 1685, 1691, 1745, 1817, 1867
RsaNI GTAC 8 cut(s) 114, 968, 1467, 1684, 1690, 1744, 1816, 1866
RseI CAYNNNNRTG 6 cut(s) 489, 625, 930, 963, 1483, 1630
SalI GTCGAC 1 cut(s) 2079
SaqAI TTAA 9 cut(s) 24, 218, 552, 906, 1133, 1329, 1724, 2060, 2129
Sau3AI GATC 8 cut(s) 286, 637, 846, 1038, 1159, 1713, 1767, 2095
Sau96I GGNCC 9 cut(s) 374, 524, 583, 584, 842, 1026, 1152, 1669, 2041
SchI GAGTC 2 cut(s) 1570, 1594
ScrFI CCNGG 5 cut(s) 420, 731, 1609, 1718, 1749
SduI GDGCHC 8 cut(s) 453, 587, 622, 937, 1273, 1627, 1989, 2245
SfaNI GCATC 7 cut(s) 97, 555, 671, 1128, 1195, 1227, 1546
SfcI CTRYAG 2 cut(s) 790, 1470
SinI GGWCC 2 cut(s) 1669, 2041
SmiMI CAYNNNNRTG 6 cut(s) 489, 625, 930, 963, 1483, 1630
SmlI CTYRAG 4 cut(s) 1328, 1349, 1664, 2022
SmoI CTYRAG 4 cut(s) 1328, 1349, 1664, 2022
SphI GCATGC 1 cut(s) 612
SseBI AGGCCT 1 cut(s) 1721
SsiI CCGC 4 cut(s) 469, 1896, 2123, 2257
SspI AATATT 1 cut(s) 1000
SspMI CTAG 5 cut(s) 186, 528, 1164, 1194, 1391
StuI AGGCCT 1 cut(s) 1721
StyD4I CCNGG 5 cut(s) 418, 729, 1607, 1716, 1747
StyI CCWWGG 4 cut(s) 76, 396, 958, 1444
TaaI ACNGT 8 cut(s) 560, 791, 887, 989, 1097, 1439, 1815, 2114
TaiI ACGT 2 cut(s) 976, 1410
TaqI TCGA 4 cut(s) 99, 1695, 1712, 2080
TatI WGTACW 3 cut(s) 967, 1466, 1689
TauI GCSGC 1 cut(s) 1898
TfiI GAWTC 5 cut(s) 631, 1230, 1279, 1848, 2071
Tru1I TTAA 9 cut(s) 24, 218, 552, 906, 1133, 1329, 1724, 2060, 2129
Tru9I TTAA 9 cut(s) 24, 218, 552, 906, 1133, 1329, 1724, 2060, 2129
TscAI CASTG 4 cut(s) 196, 759, 1485, 1932
TseFI GTSAC 6 cut(s) 178, 191, 599, 1382, 1403, 1439
Tsp45I GTSAC 6 cut(s) 178, 191, 599, 1382, 1403, 1439
TspDTI ATGAA 7 cut(s) 507, 755, 1067, 1695, 1768, 2063, 2147
TspGWI ACGGA 2 cut(s) 363, 1391
TspRI CASTG 4 cut(s) 196, 759, 1485, 1932
Tth111I GACNNNGTC 2 cut(s) 745, 1673
Van91I CCANNNNNTGG 1 cut(s) 1595
Vha464I CTTAAG 1 cut(s) 1328
VneI GTGCAC 1 cut(s) 933
VpaK11BI GGWCC 2 cut(s) 1669, 2041
VspI ATTAAT 2 cut(s) 1133, 2060
XapI RAATTY 6 cut(s) 243, 734, 879, 1074, 1343, 2035
XceI RCATGY 2 cut(s) 549, 612
XmiI GTMKAC 3 cut(s) 473, 749, 2080
XspI CTAG 5 cut(s) 186, 528, 1164, 1194, 1391
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.