Rmu_co8274513.1_g000001

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8274513.1
OG0000173
Physical Location & Seq
Forward (+)
13 .. 617
605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8274513.1_g000001.1.cds

Sequence Viewer

Length: 480 bp
atgctaagagagagaaacttcaagcaagaaattcctccagtaagaattggggaaggtgatgacattacagttgatcaggccacagctgcctataggagggctgctaccttctggaatgccttgcaatcaccccatggtcattggcctgctgaaaatactggcataaattttttctgtcctcccttggtaatgactttatactcaatgggatatcttaatgttgttttctctgctgagcataagaaggaaatcttgcgctactcgtacaatcatcagaatgaagatggtgggtggggattgcacatagcagggcctagtatgatgttcaccacatgtctcaactactgtatgatgcgtattctcggagaaggcactgagggtggtcgagataataactgtgcaagggcccggaaatggattcttgaccgcggtggtgcacaatattctgcttcatggggaaagacctggatggcggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

159

Amino Acids

18.04

Weight (kDa)

7.71

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 429
AciI CCGC 3 cut(s) 427, 429, 473
AcsI RAATTY 2 cut(s) 30, 166
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 2 cut(s) 96, 414
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 464
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 1 cut(s) 341
Alw44I GTGCAC 1 cut(s) 435
AoxI GGCC 4 cut(s) 78, 143, 311, 405
ApaI GGGCCC 1 cut(s) 409
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 86, 101
ApoI RAATTY 2 cut(s) 30, 166
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 3 cut(s) 311, 405, 406
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 3 cut(s) 68, 120, 319
BaeGI GKGCMC 2 cut(s) 409, 439
BanII GRGCYC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 73, 88
BccI CCATC 2 cut(s) 278, 463
BciT130I CCWGG 1 cut(s) 466
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 2 cut(s) 87, 102
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 2 cut(s) 88, 103
Bme1390I CCNGG 2 cut(s) 409, 466
BmgT120I GGNCC 3 cut(s) 311, 405, 406
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 409, 466
BmsI GCATC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 409
BsaJI CCNNGG 3 cut(s) 133, 183, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 414
Bse1I ACTGG 2 cut(s) 38, 163
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 3 cut(s) 133, 183, 427
BseGI GGATG 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 96, 414
BseMII CTCAG 2 cut(s) 225, 366
BseNI ACTGG 2 cut(s) 38, 163
BseSI GKGCMC 2 cut(s) 409, 439
BseXI GCAGC 2 cut(s) 73, 88
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 4 cut(s) 80, 145, 313, 407
BsiHKAI GWGCWC 1 cut(s) 439
BsiSI CCGG 1 cut(s) 409
BslI CCNNNNNNNGG 2 cut(s) 96, 414
BsmAI GTCTC 1 cut(s) 341
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 4 cut(s) 80, 145, 313, 407
Bsp120I GGGCCC 1 cut(s) 405
Bsp1286I GDGCHC 2 cut(s) 409, 439
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 234
Bsp19I CCATGG 1 cut(s) 133
BspACI CCGC 3 cut(s) 427, 429, 473
BspANI GGCC 4 cut(s) 80, 145, 313, 407
BspCNI CTCAG 2 cut(s) 226, 367
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 407
BsrI ACTGG 2 cut(s) 38, 163
BssECI CCNNGG 3 cut(s) 133, 183, 427
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 2 cut(s) 133, 183
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 3 cut(s) 70, 347, 398
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 5, 234, 375
BstDSI CCRYGG 2 cut(s) 133, 427
BstENI CCTNNNNNAGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 474
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 466
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 407, 464
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 2 cut(s) 409, 439
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 73, 88
BsuRI GGCC 4 cut(s) 80, 145, 313, 407
BtgI CCRYGG 2 cut(s) 133, 427
BtsCI GGATG 1 cut(s) 474
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 3 cut(s) 311, 405, 406
Cfr42I CCGCGG 1 cut(s) 430
Csp6I GTAC 1 cut(s) 265
CviAII CATG 3 cut(s) 134, 333, 453
CviJI RGCY 6 cut(s) 80, 86, 101, 145, 313, 407
CviKI_1 RGCY 6 cut(s) 80, 86, 101, 145, 313, 407
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 3 cut(s) 5, 234, 375
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 133, 183
Eco24I GRGCYC 1 cut(s) 409
Eco32I GATATC 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 94
EcoO109I RGGNCCY 2 cut(s) 311, 405
EcoRII CCWGG 1 cut(s) 464
EcoRV GATATC 1 cut(s) 212
EcoT14I CCWWGG 2 cut(s) 133, 183
EcoT38I GRGCYC 1 cut(s) 409
ErhI CCWWGG 2 cut(s) 133, 183
FaeI CATG 3 cut(s) 137, 336, 456
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 3 cut(s) 133, 332, 452
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 87, 102
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 87, 102
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 87, 102
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 4 cut(s) 80, 145, 313, 407
HapII CCGG 1 cut(s) 409
HhaI GCGC 1 cut(s) 258
Hin1II CATG 3 cut(s) 137, 336, 456
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 1 cut(s) 418
HpaII CCGG 1 cut(s) 409
HphI GGTGA 3 cut(s) 68, 120, 319
Hpy166II GTNNAC 2 cut(s) 327, 437
Hpy188I TCNGA 2 cut(s) 276, 365
Hpy188III TCNNGA 3 cut(s) 112, 386, 422
Hpy8I GTNNAC 2 cut(s) 327, 437
HpyAV CCTTC 4 cut(s) 47, 118, 238, 362
HpyCH4III ACNGT 3 cut(s) 70, 347, 398
HpyCH4V TGCA 4 cut(s) 124, 301, 401, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 5, 234, 375
Hsp92II CATG 3 cut(s) 137, 336, 456
HspAI GCGC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 73
KspI CCGCGG 1 cut(s) 430
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 51, 62, 97, 144, 159, 294, 422, 451
Lsp1109I GCAGC 2 cut(s) 73, 88
LweI GCATC 1 cut(s) 342
MaeI CTAG 1 cut(s) 315
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 293
MhlI GDGCHC 2 cut(s) 409, 439
MluCI AATT 3 cut(s) 30, 45, 166
MnlI CCTC 4 cut(s) 45, 90, 189, 370
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 2 cut(s) 86, 429
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 409, 466
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 1 cut(s) 466
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 409
NcoI CCATGG 1 cut(s) 133
NdeII GATC 1 cut(s) 73
NlaIII CATG 3 cut(s) 137, 336, 456
NlaIV GGNNCC 1 cut(s) 407
NspI RCATGY 1 cut(s) 336
PciI ACATGT 1 cut(s) 332
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 418
PkrI GCNGC 2 cut(s) 88, 103
PscI ACATGT 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 407
PspOMI GGGCCC 1 cut(s) 405
PspPI GGNCC 3 cut(s) 311, 405, 406
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 276
SacII CCGCGG 1 cut(s) 430
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 2 cut(s) 87, 102
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 3 cut(s) 311, 405, 406
ScrFI CCNGG 2 cut(s) 409, 466
SduI GDGCHC 2 cut(s) 409, 439
SetI ASST 4 cut(s) 58, 88, 110, 467
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 91
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 3 cut(s) 30, 45, 166
SsiI CCGC 3 cut(s) 427, 429, 473
SspI AATATT 1 cut(s) 443
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 407, 464
StyI CCWWGG 2 cut(s) 133, 183
TaaI ACNGT 3 cut(s) 70, 347, 398
TaqI TCGA 1 cut(s) 385
TasI AATT 3 cut(s) 30, 45, 166
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 379
TseI GCWGC 2 cut(s) 86, 101
TspDTI ATGAA 2 cut(s) 294, 441
TspRI CASTG 1 cut(s) 379
VneI GTGCAC 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 94
XapI RAATTY 2 cut(s) 30, 166
XceI RCATGY 1 cut(s) 336
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.