Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000048.1

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Forward (+)

150927 .. 153583

Gene Structure 2657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000048.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgtggaagcttaaggttgcagaaggtggggaagattcctcggcttacatttacagcacaaacaacttcgtgggaaggcagacatgggagtttgatcccgaagcaggaactgctgaagagagagctgaggttgaagcggcttgtcttcatttctacaacaaccgctatcaggttaagcccagtggcgaccttctttggcggatgcagttcctaagagagaaaaagttcattcagacaattcctccggtaaaagttgaagatggtgaggttataacctatgaaaaaaccatagatgcactgagaaggtctgtccacttcttctcagcattgcaggcaagcgatggccattggcctactgaaaatgctggccctttgtttttccttcctcctttgaatgacgatggtggctggggactacacatcaaaggtcatagcaccatgttcagcacagctctcagctatatttgtatgcgtattctcggagaaggatctgatgatggtgataggagcataattatgctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

174

Amino Acids

19.73

Weight (kDa)

5.09

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AciI	CCGC	3 cut(s)	137, 163, 199
AclWI	GGATC	2 cut(s)	89, 496
AcoI	YGGCCR	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	104, 169
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	134, 257, 394
AluBI	AGCT	4 cut(s)	10, 125, 452, 459
AluI	AGCT	4 cut(s)	10, 125, 452, 459
AlwI	GGATC	2 cut(s)	89, 496
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	343, 350, 367
Asp700I	GAANNNNTTC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	275, 512
BalI	TGGCCA	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	126
BccI	CCATC	4 cut(s)	254, 335, 395, 491
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	192, 283
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 169
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	104, 169
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	4 cut(s)	117, 290, 336, 469
BseNI	ACTGG	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	408
BshFI	GGCC	3 cut(s)	345, 352, 369
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	104, 169
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	3 cut(s)	345, 352, 369
Bsp143I	GATC	2 cut(s)	94, 488
BspACI	CCGC	3 cut(s)	137, 163, 199
BspANI	GGCC	3 cut(s)	345, 352, 369
BspCNI	CTCAG	4 cut(s)	118, 291, 335, 468
BspPI	GGATC	2 cut(s)	89, 496
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	94, 488
Bst6I	CTCTTC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	333, 337, 367
BstDEI	CTNAG	5 cut(s)	126, 212, 299, 322, 455
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	97, 491
BstMBI	GATC	2 cut(s)	94, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 332
BstV2I	GAAGAC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	345, 352, 369
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	187, 296
Cac8I	GCNNGC	3 cut(s)	333, 337, 367
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	368
CviAII	CATG	2 cut(s)	84, 439
DdeI	CTNAG	5 cut(s)	126, 212, 299, 322, 455
DpnI	GATC	2 cut(s)	96, 490
DpnII	GATC	2 cut(s)	94, 488
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	135
FaeI	CATG	2 cut(s)	87, 442
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	2 cut(s)	83, 438
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	1 cut(s)	412
HaeIII	GGCC	3 cut(s)	345, 352, 369
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	2 cut(s)	87, 442
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	275, 512
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	234, 482, 493
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	6 cut(s)	17, 69, 200, 297, 392, 479
HpyCH4V	TGCA	4 cut(s)	20, 205, 296, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 332
HpyF3I	CTNAG	5 cut(s)	126, 212, 299, 322, 455
Hsp92II	CATG	2 cut(s)	87, 442
Kzo9I	GATC	2 cut(s)	94, 488
LmnI	GCTCC	1 cut(s)	507
LpnPI	CCDG	7 cut(s)	90, 155, 193, 258, 317, 351, 394
LweI	GCATC	2 cut(s)	192, 283
MalI	GATC	2 cut(s)	96, 490
MboI	GATC	2 cut(s)	94, 488
MboII	GAAGA	5 cut(s)	44, 128, 137, 269, 310
MflI	RGATCY	1 cut(s)	488
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	2 cut(s)	237, 513
MluNI	TGGCCA	1 cut(s)	345
MnlI	CCTC	5 cut(s)	49, 121, 252, 259, 396
Mox20I	TGGCCA	1 cut(s)	345
MroXI	GAANNNNTTC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	2 cut(s)	12, 174
MslI	CAYNNNNRTG	1 cut(s)	515
Msp20I	TGGCCA	1 cut(s)	345
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	110, 332
NdeII	GATC	2 cut(s)	94, 488
NlaIII	CATG	2 cut(s)	87, 442
NmeAIII	GCCGAG	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	12, 174
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	94, 488
Sau96I	GGNCC	1 cut(s)	368
SfaNI	GCATC	2 cut(s)	192, 283
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	237, 513
SsiI	CCGC	3 cut(s)	137, 163, 199
TasI	AATT	2 cut(s)	237, 513
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	12, 174
Tru9I	TTAA	2 cut(s)	12, 174
TscAI	CASTG	2 cut(s)	187, 303
TspDTI	ATGAA	3 cut(s)	137, 217, 294
TspRI	CASTG	2 cut(s)	187, 303
Vha464I	CTTAAG	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.