RchiOBHm_Chr5g0049801

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000173
Physical Location & Seq
Reverse (-)
47695734 .. 47697115
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32743

Sequence Viewer

Length: 681 bp
ATGTGGAGAATTGAGTATGGAAAGGGTGCAAATGACCCTCATTTATTCAGCACAAACAACTTGCATGGGAGGCAGACATGGAAGTTTGACCCAAATGCAGGTACACCAGAAGAGCGAGCAGAGGTTGAAGCCGCTCGCGAGAATTACTACCAAAATCGGTTCAAGATCCAGCCCAGTAGTGATCTCCTTTGGCGTTTTCAGATGCTAAGAGAGAGAAACTTCAAGCAAGAAATTCCTCCAGTAAGAATTGGGGAAGGTGATGACATTACAGTTTATCAGGCCACAGCTGCCTATAGGAGGGCTGCAACCTTCTGGAATGCCTTGCAATCACCCCATGGTCATTGGCCTGCTGAAAATTCTGGCATAAATTTTTTCTGTTCTCCCTTGGTAATGACTTTATACTCAATGGGATATCTTAATGTTGTTTTCTCTGCTGAGCATAAGAAGGAAATCTTGCGCTACTCGTACAATCATCAGAATGAAGATGGTGGGTGGGGATTGCACATAGCAGGGCCTAGTATGATGTTCACCACATGTCTCAACTACTGTATGATGCGTATCCTCGGAGAAGGCACTGAGGGCGGTCGAGATAATAACTGTGCAAGGGCCCGGAAATGGATTCTTGACCGCGGTGGTGCACAATATTCTGCTTCATGGGGAAAGACCTGGATGGCGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

226

Amino Acids

26.06

Weight (kDa)

8.32

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 100 - 226 9.3e-14 Squalene-hopene cyclase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 89
AccBSI CCGCTC 1 cut(s) 134
AccII CGCG 2 cut(s) 138, 630
AciI CCGC 5 cut(s) 132, 582, 628, 630, 674
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 3 cut(s) 231, 355, 367
AfaI GTAC 2 cut(s) 103, 467
AfiI CCNNNNNNNGG 3 cut(s) 98, 297, 615
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 3 cut(s) 128, 163, 223
AjnI CCWGG 1 cut(s) 665
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 1 cut(s) 542
Alw44I GTGCAC 1 cut(s) 636
AlwI GGATC 1 cut(s) 160
AoxI GGCC 4 cut(s) 279, 344, 512, 606
ApaI GGGCCC 1 cut(s) 610
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 2 cut(s) 287, 302
ApoI RAATTY 3 cut(s) 231, 355, 367
AspLEI GCGC 1 cut(s) 459
AspS9I GGNCC 3 cut(s) 512, 606, 607
AsuC2I CCSGG 1 cut(s) 610
AsuHPI GGTGA 3 cut(s) 269, 321, 520
BaeGI GKGCMC 2 cut(s) 610, 640
BanII GRGCYC 1 cut(s) 610
Bbv12I GWGCWC 1 cut(s) 640
BbvI GCAGC 2 cut(s) 274, 289
BccI CCATC 2 cut(s) 479, 664
BciT130I CCWGG 1 cut(s) 667
BciVI GTATCC 1 cut(s) 569
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 89
BfuI GTATCC 1 cut(s) 569
BisI GCNGC 3 cut(s) 132, 288, 303
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 3 cut(s) 133, 289, 304
Bme1390I CCNGG 2 cut(s) 610, 667
BmgT120I GGNCC 3 cut(s) 512, 606, 607
BmiI GGNNCC 1 cut(s) 608
BmrFI CCNGG 2 cut(s) 610, 667
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 192, 543
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 610
BsaBI GATNNNNATC 1 cut(s) 557
BsaJI CCNNGG 4 cut(s) 334, 384, 562, 628
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 297, 615
Bse1I ACTGG 2 cut(s) 174, 239
Bse8I GATNNNNATC 1 cut(s) 557
BseBI CCWGG 1 cut(s) 667
BseDI CCNNGG 4 cut(s) 334, 384, 562, 628
BseGI GGATG 1 cut(s) 675
BseJI GATNNNNATC 1 cut(s) 557
BseLI CCNNNNNNNGG 3 cut(s) 98, 297, 615
BseMII CTCAG 2 cut(s) 426, 567
BseNI ACTGG 2 cut(s) 174, 239
BseSI GKGCMC 2 cut(s) 610, 640
BseXI GCAGC 2 cut(s) 274, 289
Bsh1236I CGCG 2 cut(s) 138, 630
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 4 cut(s) 281, 346, 514, 608
BsiEI CGRYCG 1 cut(s) 586
BsiHKAI GWGCWC 1 cut(s) 640
BsiSI CCGG 1 cut(s) 610
BslI CCNNNNNNNGG 3 cut(s) 98, 297, 615
BsmAI GTCTC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 4 cut(s) 281, 346, 514, 608
Bsp120I GGGCCC 1 cut(s) 606
Bsp1286I GDGCHC 2 cut(s) 610, 640
Bsp143I GATC 2 cut(s) 165, 181
Bsp1720I GCTNAGC 1 cut(s) 435
Bsp19I CCATGG 1 cut(s) 334
Bsp68I TCGCGA 1 cut(s) 138
BspACI CCGC 5 cut(s) 132, 582, 628, 630, 674
BspANI GGCC 4 cut(s) 281, 346, 514, 608
BspCNI CTCAG 2 cut(s) 427, 568
BspFNI CGCG 2 cut(s) 138, 630
BspLI GGNNCC 1 cut(s) 608
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 134
BsrI ACTGG 2 cut(s) 174, 239
BssECI CCNNGG 4 cut(s) 334, 384, 562, 628
BssMI GATC 2 cut(s) 165, 181
BssT1I CCWWGG 2 cut(s) 334, 384
Bst2UI CCWGG 1 cut(s) 667
Bst4CI ACNGT 3 cut(s) 271, 548, 599
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 117, 136, 348
BstDEI CTNAG 3 cut(s) 206, 435, 576
BstDSI CCRYGG 2 cut(s) 334, 628
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 675
BstFNI CGCG 2 cut(s) 138, 630
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 2 cut(s) 168, 184
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 2 cut(s) 165, 181
BstMCI CGRYCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 3 cut(s) 70, 287, 579
BstNI CCWGG 1 cut(s) 667
BstNSI RCATGY 1 cut(s) 537
BstSCI CCNGG 2 cut(s) 608, 665
BstSFI CTRYAG 1 cut(s) 292
BstSLI GKGCMC 2 cut(s) 610, 640
BstUI CGCG 2 cut(s) 138, 630
BstV1I GCAGC 2 cut(s) 274, 289
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 4 cut(s) 281, 346, 514, 608
BtgI CCRYGG 2 cut(s) 334, 628
BtsCI GGATG 1 cut(s) 675
BtsIMutI CAGTG 1 cut(s) 573
BtuMI TCGCGA 1 cut(s) 138
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 3 cut(s) 117, 136, 348
CfoI GCGC 1 cut(s) 459
Cfr13I GGNCC 3 cut(s) 512, 606, 607
Cfr42I CCGCGG 1 cut(s) 631
Csp6I GTAC 2 cut(s) 102, 466
CviAII CATG 5 cut(s) 65, 78, 335, 534, 654
CviJI RGCY 8 cut(s) 131, 172, 281, 287, 302, 346, 514, 608
CviKI_1 RGCY 8 cut(s) 131, 172, 281, 287, 302, 346, 514, 608
CviQI GTAC 2 cut(s) 102, 466
DdeI CTNAG 3 cut(s) 206, 435, 576
DpnI GATC 2 cut(s) 167, 183
DpnII GATC 2 cut(s) 165, 181
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 334, 384
Eco24I GRGCYC 1 cut(s) 610
Eco32I GATATC 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoO109I RGGNCCY 2 cut(s) 512, 606
EcoRII CCWGG 1 cut(s) 665
EcoRV GATATC 1 cut(s) 413
EcoT14I CCWWGG 2 cut(s) 334, 384
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 2 cut(s) 334, 384
FaeI CATG 5 cut(s) 68, 81, 338, 537, 657
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FatI CATG 5 cut(s) 64, 77, 334, 533, 653
Fnu4HI GCNGC 3 cut(s) 132, 288, 303
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 3 cut(s) 132, 288, 303
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 458
GluI GCNGC 3 cut(s) 132, 288, 303
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 4 cut(s) 281, 346, 514, 608
HapII CCGG 1 cut(s) 610
HhaI GCGC 1 cut(s) 459
Hin1II CATG 5 cut(s) 68, 81, 338, 537, 657
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HinfI GANTC 1 cut(s) 619
HpaII CCGG 1 cut(s) 610
HphI GGTGA 3 cut(s) 269, 321, 520
Hpy166II GTNNAC 3 cut(s) 104, 528, 638
Hpy188I TCNGA 3 cut(s) 201, 477, 566
Hpy188III TCNNGA 5 cut(s) 137, 163, 313, 587, 623
Hpy8I GTNNAC 3 cut(s) 104, 528, 638
HpyAV CCTTC 4 cut(s) 248, 319, 439, 563
HpyCH4III ACNGT 3 cut(s) 271, 548, 599
HpyCH4V TGCA 8 cut(s) 29, 64, 98, 305, 325, 502, 602, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 287, 579
HpyF3I CTNAG 3 cut(s) 206, 435, 576
Hsp92II CATG 5 cut(s) 68, 81, 338, 537, 657
HspAI GCGC 1 cut(s) 457
KspI CCGCGG 1 cut(s) 631
Kzo9I GATC 2 cut(s) 165, 181
LguI GCTCTTC 1 cut(s) 105
Lsp1109I GCAGC 2 cut(s) 274, 289
LweI GCATC 2 cut(s) 192, 543
MaeI CTAG 1 cut(s) 516
MalI GATC 2 cut(s) 167, 183
MbiI CCGCTC 1 cut(s) 134
MboI GATC 2 cut(s) 165, 181
MboII GAAGA 2 cut(s) 122, 494
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 610, 640
MluCI AATT 6 cut(s) 9, 142, 231, 246, 355, 367
MnlI CCTC 7 cut(s) 48, 63, 115, 246, 291, 571, 572
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 2 cut(s) 287, 630
MspI CCGG 1 cut(s) 610
MspR9I CCNGG 2 cut(s) 610, 667
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 1 cut(s) 667
MvnI CGCG 2 cut(s) 138, 630
MwoI GCNNNNNNNGC 3 cut(s) 70, 287, 579
NciI CCSGG 1 cut(s) 610
NcoI CCATGG 1 cut(s) 334
NdeII GATC 2 cut(s) 165, 181
NlaIII CATG 5 cut(s) 68, 81, 338, 537, 657
NlaIV GGNNCC 1 cut(s) 608
NruI TCGCGA 1 cut(s) 138
NspI RCATGY 1 cut(s) 537
PciI ACATGT 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 1 cut(s) 619
PkrI GCNGC 3 cut(s) 133, 289, 304
PscI ACATGT 1 cut(s) 533
Psp6I CCWGG 1 cut(s) 665
PspGI CCWGG 1 cut(s) 665
PspN4I GGNNCC 1 cut(s) 608
PspOMI GGGCCC 1 cut(s) 606
PspPI GGNCC 3 cut(s) 512, 606, 607
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 287
RruI TCGCGA 1 cut(s) 138
RsaI GTAC 2 cut(s) 103, 467
RsaNI GTAC 2 cut(s) 102, 466
RseI CAYNNNNRTG 1 cut(s) 477
SacII CCGCGG 1 cut(s) 631
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 3 cut(s) 132, 288, 303
Sau3AI GATC 2 cut(s) 165, 181
Sau96I GGNCC 3 cut(s) 512, 606, 607
ScrFI CCNGG 2 cut(s) 610, 667
SduI GDGCHC 2 cut(s) 610, 640
SetI ASST 6 cut(s) 103, 126, 259, 289, 311, 668
SfaNI GCATC 2 cut(s) 192, 543
SfcI CTRYAG 1 cut(s) 292
Sfr303I CCGCGG 1 cut(s) 631
SgrBI CCGCGG 1 cut(s) 631
SmiMI CAYNNNNRTG 1 cut(s) 477
Sse9I AATT 6 cut(s) 9, 142, 231, 246, 355, 367
SsiI CCGC 5 cut(s) 132, 582, 628, 630, 674
SspI AATATT 1 cut(s) 644
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 2 cut(s) 608, 665
StyI CCWWGG 2 cut(s) 334, 384
TaaI ACNGT 3 cut(s) 271, 548, 599
TaqI TCGA 1 cut(s) 586
TasI AATT 6 cut(s) 9, 142, 231, 246, 355, 367
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 580
TseI GCWGC 2 cut(s) 287, 302
TspDTI ATGAA 2 cut(s) 495, 642
TspRI CASTG 1 cut(s) 580
VneI GTGCAC 1 cut(s) 636
XagI CCTNNNNNAGG 1 cut(s) 295
XapI RAATTY 3 cut(s) 231, 355, 367
XceI RCATGY 1 cut(s) 537
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.