FvH4_6g37620

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
29620459 .. 29625755
5297 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37620.t1

Sequence Viewer

Length: 2298 bp
ATGTGGAAGCTGAAGGTTTCAGAAGGTGAGAAAGATTCCTCGGGTTACCTTTACAGCACAAACAATTTCGTTGGAAGGCAAACATGGGAGTTTGATCCCGACGCAGGAACTGCTGAAGAGCGAGCTGAGGTTGAAGCGGCTCGTCTGCATTTCCACAACAACCGCCATGAGGTTAAGCCCAGTGGTGACCTTCTCTGGAGAATGCAGTTCCTAAGGGAGAAGAAATTCAAACAGACAATTCCTCCAGTAAAAGTTGAAGATGGCGAGGTTATCACACATGAAAAAACCACGGATGCTCTGAGAAGGTCTGTCCACTTCTTGTCAGCCTTGCAGGCAAGCGATGGCCATTGGCCTGCGGAAAATGCCGGCCCTTTGTTTTTCCTTCCTCCTTTGGTCATGGTTATGCACATTACGGGGCATCTTAAGAGTGTATTCTCCGAGGAGCATCGTAAAGAAATTCTGCGTTACATATACTATCATCAGAATGAAGATGGTGGTTGGGGACTACATATCGAAGGTCGAAAAAGCACCATGTTCAGCACAGCTCTCAGCTACATTTTTATGCGTATTCTCGGAGAAGGACCTGATGATGGTGGCCAAGACAATGCTTGTCCAAGAGCAAGAAAGTGGATTCTTGATCATGGTGGTGTCACACACATACCCTCTTGGGGAAAGACTTGGCTTTCGATACTTGGTTTGTTTGATTGGTCTGGAAGCAACCCTATGCCCCCAGAGTTTTGGATTCTTCCTTCATTTTTTCCAATGCATCCAGCAAAAATTTGGTGCTATTGTAGGATGACTTACATGCCAATGTCATACCTATATGGAAAAAGATTTGTTGGCCCAATAACACCTCTGATTATTCAATTGAGAGAAGAACTTTTTACTCAACCATACGGTGAAATCAACTGGAAGAAAGCACGTCATCTATGTGCCAAGGAGGATATCTACTACCCTCATCCTTGGATACAGGATCTCCTTTGGGATAGCCTCTACATTTTCACAGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGCTGATCAGAGAAAAGGCTCTTCAAGTGACGATGAGCCATATCCATTACGAAGATGAGAACAGTCGATACATTACCATGGGGTGTGTCGAAAAGGTGTTATGTATGCTCGCCTGTTGGGTTGAAGATCCAAATGGGGACTATTTCAAGAAGCATCTCGCGAGGATCCGAGATTATTTATGGGTTGCTGAAGATGGGATGAAGATGCAAGGTTTTGGCAGTCAGCAGTGGGATACTAGTTTGGCTATTCAAGCTTTGCTTGCTAGTAATCTCACGGATGAAATCGGACCGACGCTTGCTAGAGGACATGACTACATAAAGGAATCTCAGGTCAAGGAGAACCCATCTGGGGACTTCAAAAGCATGTACCGCCACATTTCTAAAGGATCGTGGACTTTCTCCGATCAAGATCATGGATGGCAAATTTCTGATGGCACTGCAGAAGGTTTAAAGTGTTGCCTTCTATTGTCGATGATGCCATCGGAGATAGTTGGTGAAAAAATGGAACCCGAGTGCTTGTATGATTCTGTCAATCTTCTACTTTCCCTACAGAGCATGAATGGTGGTTTTCCACCCTGGGAACCAGCAAGGGGAGCAGAGTGGTTAGAACTGTTAAATCCAGCAGAATTCTTGGCTGACATTATGATTGAGCATGAACATGGTGAGTGCACTTCATCTGTAATCCAGGCGTTAGTTATGTTTAAGAAGCTACACCCTGAGCACAGGAAGGAAGAGATTGAAGATTCCATCTCCATTGCTTTACACTACCTTGAAAATATACAAATGTCGGATGGTTCATGGTATCGAGATTGGGGAGTTTGCTTCACATACGGTACCTGGTTTGCGCTAAGCGGATTGGCAGCTGCTGGGAAGACTTTTAGCACTTGTGCAGCCATGCGCAATGGGGTTAGCTTTTTGCTTAAGGTCCAGAGAGAGAATGGTGGTTGGGGAGAGAGCTATCTTTCATGCCCACAAGAGACGTACGTTCATCTCGAAGGAAACCGATCCAATCTAGTACAGACTGCTTGGGCTATGATGGGTCTCATTAGTGCAGGTCAGGCAGAAAGAGACCCGGCACCTCTTCATCGTGCTGCAAAGTTTATAATCAATTCTCAACTGGAAAATGGTGATTTTCCCCAGCAGGAAATCACCGGAGTCTTCAAGAAGAACTGCATGATGCATTTTGCAGCATATAGAAACATATACCCAATGTGGGCTCTTGCAGAATATCGCAATCGGGTTCCCTTGCCTTCCGAGGGCTGA

Protein Analysis

766

Amino Acids

87.88

Weight (kDa)

5.85

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 101 - 365 2.9e-36 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 421 - 757 6.2e-50 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2138
Acc16I TGCGCA 1 cut(s) 1934
Acc36I ACCTGC 1 cut(s) 2078
Acc65I GGTACC 1 cut(s) 1868
AccB1I GGYRCC 2 cut(s) 1868, 2110
AccII CGCG 1 cut(s) 1196
AciI CCGC 5 cut(s) 137, 163, 356, 1405, 1887
AclWI GGATC 7 cut(s) 89, 981, 1157, 1195, 1208, 1429, 2034
AcoI YGGCCR 2 cut(s) 343, 595
AcsI RAATTY 5 cut(s) 224, 456, 777, 1458, 1661
AcuI CTGAAG 3 cut(s) 32, 135, 1245
AfaI GTAC 4 cut(s) 1403, 1870, 2018, 2052
AfiI CCNNNNNNNGG 8 cut(s) 104, 169, 590, 668, 1384, 1625, 2248, 2291
AflII CTTAAG 2 cut(s) 422, 1955
AhlI ACTAGT 1 cut(s) 1271
AjiI CACGTC 1 cut(s) 923
AjnI CCWGG 3 cut(s) 1610, 1719, 1871
Alw21I GWGCWC 2 cut(s) 1706, 1758
Alw26I GTCTC 3 cut(s) 2006, 2081, 2097
Alw44I GTGCAC 1 cut(s) 1702
AlwI GGATC 7 cut(s) 89, 981, 1157, 1195, 1208, 1429, 2034
AlwNI CAGNNNCTG 2 cut(s) 110, 1901
Ama87I CYCGRG 2 cut(s) 40, 1544
AoxI GGCC 6 cut(s) 343, 350, 367, 595, 841, 1025
ApaLI GTGCAC 1 cut(s) 1702
ApeKI GCWGC 5 cut(s) 1895, 1898, 1925, 2126, 2222
ApoI RAATTY 5 cut(s) 224, 456, 777, 1458, 1661
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
Asp700I GAANNNNTTC 1 cut(s) 224
Asp718I GGTACC 1 cut(s) 1868
AspLEI GCGC 2 cut(s) 1882, 1935
AspS9I GGNCC 6 cut(s) 368, 581, 842, 1026, 1322, 1960
AsuC2I CCSGG 1 cut(s) 2108
AsuHPI GGTGA 7 cut(s) 38, 197, 911, 1541, 1709, 2174, 2176
AvaI CYCGRG 2 cut(s) 40, 1544
AvaII GGWCC 3 cut(s) 581, 1322, 1960
AxyI CCTNAGG 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 1706
BalI TGGCCA 2 cut(s) 345, 597
BamHI GGATCC 1 cut(s) 1200
BanI GGYRCC 2 cut(s) 1868, 2110
BanII GRGCYC 1 cut(s) 2254
BbsI GAAGAC 2 cut(s) 1913, 2185
Bbv12I GWGCWC 2 cut(s) 1706, 1758
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 5 cut(s) 1885, 1907, 1937, 2113, 2234
BciT130I CCWGG 3 cut(s) 1612, 1721, 1873
BciVI GTATCC 2 cut(s) 960, 1261
BclI TGATCA 2 cut(s) 637, 1041
BcnI CCSGG 1 cut(s) 2108
BcoDI GTCTC 3 cut(s) 2006, 2081, 2097
BcuI ACTAGT 1 cut(s) 1271
BfaI CTAG 4 cut(s) 1272, 1299, 1335, 2048
BfmI CTRYAG 2 cut(s) 1473, 1583
BfrI CTTAAG 2 cut(s) 422, 1955
BfuAI ACCTGC 1 cut(s) 2078
BfuI GTATCC 2 cut(s) 960, 1261
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 6 cut(s) 138, 1896, 1899, 1926, 2127, 2223
BlpI GCTNAGC 1 cut(s) 1883
BlsI GCNGC 6 cut(s) 139, 1897, 1900, 1927, 2128, 2224
Bme1390I CCNGG 4 cut(s) 1612, 1721, 1873, 2108
Bme18I GGWCC 3 cut(s) 581, 1322, 1960
BmeT110I CYCGRG 2 cut(s) 40, 1544
BmgBI CACGTC 1 cut(s) 923
BmgT120I GGNCC 6 cut(s) 368, 581, 842, 1026, 1322, 1960
BmiI GGNNCC 6 cut(s) 1202, 1542, 1617, 1870, 2112, 2277
BmrFI CCNGG 4 cut(s) 1612, 1721, 1873, 2108
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 8 cut(s) 283, 427, 454, 775, 1198, 1230, 1500, 2202
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 2 cut(s) 1913, 2185
BpmI CTGGAG 2 cut(s) 217, 228
Bpu10I CCTNAGC 2 cut(s) 126, 1752
Bpu1102I GCTNAGC 1 cut(s) 1883
BpuMI CCSGG 1 cut(s) 2108
BsaBI GATNNNNATC 1 cut(s) 1443
BsaI GGTCTC 2 cut(s) 2081, 2097
BsaJI CCNNGG 9 cut(s) 39, 288, 438, 936, 962, 1113, 1610, 1611, 2289
BsaWI WCCGGW 1 cut(s) 2186
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 960, 990
Bsc4I CCNNNNNNNGG 8 cut(s) 104, 169, 590, 668, 1384, 1625, 2248, 2291
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 4 cut(s) 180, 245, 914, 2157
Bse21I CCTNAGG 1 cut(s) 212
Bse3DI GCAATG 2 cut(s) 1788, 1942
Bse8I GATNNNNATC 1 cut(s) 1443
BseBI CCWGG 3 cut(s) 1612, 1721, 1873
BseDI CCNNGG 9 cut(s) 39, 288, 438, 936, 962, 1113, 1610, 1611, 2289
BseGI GGATG 8 cut(s) 298, 766, 801, 958, 1239, 1318, 1457, 1831
BseJI GATNNNNATC 1 cut(s) 1443
BseLI CCNNNNNNNGG 8 cut(s) 104, 169, 590, 668, 1384, 1625, 2248, 2291
BseMI GCAATG 2 cut(s) 1788, 1942
BseMII CTCAG 5 cut(s) 117, 290, 562, 1376, 1743
BseNI ACTGG 4 cut(s) 180, 245, 914, 2157
BseRI GAGGAG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 1706
BseXI GCAGC 5 cut(s) 1885, 1907, 1937, 2113, 2234
BseYI CCCAGC 2 cut(s) 1901, 2172
BsgI GTGCAG 2 cut(s) 1944, 2106
Bsh1236I CGCG 1 cut(s) 1196
BshFI GGCC 6 cut(s) 345, 352, 369, 597, 843, 1027
BshNI GGYRCC 2 cut(s) 1868, 2110
BsiHKAI GWGCWC 2 cut(s) 1706, 1758
BsiHKCI CYCGRG 2 cut(s) 40, 1544
BsiSI CCGG 3 cut(s) 366, 2108, 2187
BsiWI CGTACG 1 cut(s) 2016
BslFI GGGAC 3 cut(s) 516, 1187, 1400
BslI CCNNNNNNNGG 8 cut(s) 104, 169, 590, 668, 1384, 1625, 2248, 2291
BsmAI GTCTC 3 cut(s) 2006, 2081, 2097
BsmBI CGTCTC 1 cut(s) 2006
BsmFI GGGAC 3 cut(s) 516, 1187, 1400
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 6 cut(s) 345, 352, 369, 597, 843, 1027
Bso31I GGTCTC 2 cut(s) 2081, 2097
BsoBI CYCGRG 2 cut(s) 40, 1544
Bsp1286I GDGCHC 3 cut(s) 1706, 1758, 2254
Bsp1720I GCTNAGC 1 cut(s) 1883
Bsp19I CCATGG 1 cut(s) 1113
Bsp68I TCGCGA 1 cut(s) 1196
BspACI CCGC 5 cut(s) 137, 163, 356, 1405, 1887
BspANI GGCC 6 cut(s) 345, 352, 369, 597, 843, 1027
BspCNI CTCAG 5 cut(s) 118, 291, 561, 1375, 1744
BspFNI CGCG 1 cut(s) 1196
BspLI GGNNCC 6 cut(s) 1202, 1542, 1617, 1870, 2112, 2277
BspMAI CTGCAG 1 cut(s) 1477
BspMI ACCTGC 1 cut(s) 2078
BspPI GGATC 7 cut(s) 89, 981, 1157, 1195, 1208, 1429, 2034
BspQI GCTCTTC 2 cut(s) 111, 1062
BspT107I GGYRCC 2 cut(s) 1868, 2110
BspTI CTTAAG 2 cut(s) 422, 1955
BspTNI GGTCTC 2 cut(s) 2081, 2097
BsrDI GCAATG 2 cut(s) 1788, 1942
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 4 cut(s) 180, 245, 914, 2157
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 9 cut(s) 39, 288, 438, 936, 962, 1113, 1610, 1611, 2289
BssT1I CCWWGG 3 cut(s) 936, 962, 1113
Bst2UI CCWGG 3 cut(s) 1612, 1721, 1873
Bst4CI ACNGT 4 cut(s) 899, 1100, 1647, 1868
Bst6I CTCTTC 5 cut(s) 111, 1017, 1062, 1761, 2121
BstAFI CTTAAG 2 cut(s) 422, 1955
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 8 cut(s) 123, 333, 337, 354, 367, 1146, 1296, 1332
BstDEI CTNAG 7 cut(s) 126, 212, 299, 548, 1362, 1752, 1883
BstDSI CCRYGG 2 cut(s) 288, 1113
BstEII GGTNACC 2 cut(s) 44, 185
BstF5I GGATG 8 cut(s) 298, 766, 801, 958, 1239, 1318, 1457, 1831
BstFNI CGCG 1 cut(s) 1196
BstHHI GCGC 2 cut(s) 1882, 1935
BstMAI GTCTC 3 cut(s) 2006, 2081, 2097
BstMWI GCNNNNNNNGC 8 cut(s) 110, 332, 362, 1286, 1295, 1404, 1628, 2093
BstNI CCWGG 3 cut(s) 1612, 1721, 1873
BstNSI RCATGY 2 cut(s) 808, 1402
BstPI GGTNACC 2 cut(s) 44, 185
BstSCI CCNGG 4 cut(s) 1610, 1719, 1871, 2106
BstSFI CTRYAG 2 cut(s) 1473, 1583
BstSLI GKGCMC 1 cut(s) 1706
BstUI CGCG 1 cut(s) 1196
BstV1I GCAGC 5 cut(s) 1885, 1907, 1937, 2113, 2234
BstV2I GAAGAC 2 cut(s) 1913, 2185
BstX2I RGATCY 3 cut(s) 973, 1162, 1200
BstXI CCANNNNNNTGG 1 cut(s) 738
BstYI RGATCY 3 cut(s) 973, 1162, 1200
Bsu36I CCTNAGG 1 cut(s) 212
BsuI GTATCC 2 cut(s) 960, 1261
BsuRI GGCC 6 cut(s) 345, 352, 369, 597, 843, 1027
BtgI CCRYGG 2 cut(s) 288, 1113
BtgZI GCGATG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 923
BtsCI GGATG 8 cut(s) 298, 766, 801, 958, 1239, 1318, 1457, 1831
BtsI GCAGTG 2 cut(s) 1268, 1470
BtsIMutI CAGTG 3 cut(s) 187, 1268, 1470
BtuMI TCGCGA 1 cut(s) 1196
BveI ACCTGC 1 cut(s) 2078
Cac8I GCNNGC 8 cut(s) 123, 333, 337, 354, 367, 1146, 1296, 1332
CaiI CAGNNNCTG 2 cut(s) 110, 1901
CfoI GCGC 2 cut(s) 1882, 1935
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 6 cut(s) 368, 581, 842, 1026, 1322, 1960
CpoI CGGWCCG 1 cut(s) 1322
CseI GACGC 2 cut(s) 110, 1336
CsiI ACCWGGT 1 cut(s) 1871
Csp6I GTAC 4 cut(s) 1402, 1869, 2017, 2051
CspI CGGWCCG 1 cut(s) 1322
CviQI GTAC 4 cut(s) 1402, 1869, 2017, 2051
DdeI CTNAG 7 cut(s) 126, 212, 299, 548, 1362, 1752, 1883
DraI TTTAAA 1 cut(s) 1485
EaeI YGGCCR 2 cut(s) 343, 595
Eam1104I CTCTTC 5 cut(s) 111, 1017, 1062, 1761, 2121
EarI CTCTTC 5 cut(s) 111, 1017, 1062, 1761, 2121
Eco130I CCWWGG 3 cut(s) 936, 962, 1113
Eco24I GRGCYC 1 cut(s) 2254
Eco31I GGTCTC 2 cut(s) 2081, 2097
Eco32I GATATC 1 cut(s) 946
Eco47I GGWCC 3 cut(s) 581, 1322, 1960
Eco57I CTGAAG 3 cut(s) 32, 135, 1245
Eco81I CCTNAGG 1 cut(s) 212
Eco88I CYCGRG 2 cut(s) 40, 1544
Eco91I GGTNACC 2 cut(s) 44, 185
EcoO109I RGGNCCY 1 cut(s) 581
EcoO65I GGTNACC 2 cut(s) 44, 185
EcoRI GAATTC 1 cut(s) 1661
EcoRII CCWGG 3 cut(s) 1610, 1719, 1871
EcoRV GATATC 1 cut(s) 946
EcoT14I CCWWGG 3 cut(s) 936, 962, 1113
EcoT22I ATGCAT 2 cut(s) 768, 2217
EcoT38I GRGCYC 1 cut(s) 2254
ErhI CCWWGG 3 cut(s) 936, 962, 1113
Esp3I CGTCTC 1 cut(s) 2006
FalI AAGNNNNNCTT 2 cut(s) 1278, 1310
FaqI GGGAC 3 cut(s) 516, 1187, 1400
FbaI TGATCA 2 cut(s) 637, 1041
Fnu4HI GCNGC 6 cut(s) 138, 1896, 1899, 1926, 2127, 2223
FokI GGATG 8 cut(s) 305, 753, 808, 945, 1246, 1325, 1464, 1838
FriOI GRGCYC 1 cut(s) 2254
Fsp4HI GCNGC 6 cut(s) 138, 1896, 1899, 1926, 2127, 2223
FspBI CTAG 4 cut(s) 1272, 1299, 1335, 2048
FspI TGCGCA 1 cut(s) 1934
GlaI GCGC 2 cut(s) 1881, 1934
GluI GCNGC 6 cut(s) 138, 1896, 1899, 1926, 2127, 2223
GsaI CCCAGC 2 cut(s) 1905, 2176
GsuI CTGGAG 2 cut(s) 217, 228
HaeIII GGCC 6 cut(s) 345, 352, 369, 597, 843, 1027
HapII CCGG 3 cut(s) 366, 2108, 2187
HgaI GACGC 2 cut(s) 110, 1336
HhaI GCGC 2 cut(s) 1882, 1935
Hin6I GCGC 2 cut(s) 1880, 1933
HinP1I GCGC 2 cut(s) 1880, 1933
HindIII AAGCTT 1 cut(s) 1287
HinfI GANTC 7 cut(s) 35, 631, 742, 1358, 1559, 1778, 2190
HpaII CCGG 3 cut(s) 366, 2108, 2187
HphI GGTGA 7 cut(s) 38, 197, 911, 1541, 1709, 2174, 2176
Hpy166II GTNNAC 3 cut(s) 313, 1428, 1704
Hpy8I GTNNAC 3 cut(s) 313, 1428, 1704
Hpy99I CGWCG 2 cut(s) 104, 1330
HpyCH4III ACNGT 4 cut(s) 899, 1100, 1647, 1868
HpyCH4IV ACGT 3 cut(s) 922, 2015, 2019
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 332, 362, 1286, 1295, 1404, 1628, 2093
HpyF3I CTNAG 7 cut(s) 126, 212, 299, 548, 1362, 1752, 1883
HpySE526I ACGT 3 cut(s) 922, 2015, 2019
HspAI GCGC 2 cut(s) 1880, 1933
KpnI GGTACC 1 cut(s) 1872
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Ksp22I TGATCA 2 cut(s) 637, 1041
LguI GCTCTTC 2 cut(s) 111, 1062
LmnI GCTCC 2 cut(s) 442, 1628
Lsp1109I GCAGC 5 cut(s) 1885, 1907, 1937, 2113, 2234
LweI GCATC 8 cut(s) 283, 427, 454, 775, 1198, 1230, 1500, 2202
MabI ACCWGGT 1 cut(s) 1871
MaeI CTAG 4 cut(s) 1272, 1299, 1335, 2048
MaeII ACGT 3 cut(s) 922, 2015, 2019
MaeIII GTNAC 5 cut(s) 44, 185, 464, 649, 1063
MfeI CAATTG 1 cut(s) 866
MflI RGATCY 3 cut(s) 973, 1162, 1200
MhlI GDGCHC 3 cut(s) 1706, 1758, 2254
MlsI TGGCCA 2 cut(s) 345, 597
MluCI AATT 9 cut(s) 64, 224, 237, 456, 777, 866, 1458, 1661, 2143
MluNI TGGCCA 2 cut(s) 345, 597
MlyI GAGTC 1 cut(s) 2199
MmeI TCCRAC 2 cut(s) 52, 1803
Mox20I TGGCCA 2 cut(s) 345, 597
Mph1103I ATGCAT 2 cut(s) 768, 2217
MroNI GCCGGC 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 224
MscI TGGCCA 2 cut(s) 345, 597
MseI TTAA 6 cut(s) 174, 423, 1484, 1649, 1737, 1956
MslI CAYNNNNRTG 8 cut(s) 401, 483, 560, 645, 809, 930, 1112, 1692
Msp20I TGGCCA 2 cut(s) 345, 597
MspA1I CMGCKG 1 cut(s) 1898
MspCI CTTAAG 2 cut(s) 422, 1955
MspI CCGG 3 cut(s) 366, 2108, 2187
MspR9I CCNGG 4 cut(s) 1612, 1721, 1873, 2108
MunI CAATTG 1 cut(s) 866
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 3 cut(s) 1612, 1721, 1873
MvnI CGCG 1 cut(s) 1196
MwoI GCNNNNNNNGC 8 cut(s) 110, 332, 362, 1286, 1295, 1404, 1628, 2093
NaeI GCCGGC 1 cut(s) 367
NciI CCSGG 1 cut(s) 2108
NcoI CCATGG 1 cut(s) 1113
NgoMIV GCCGGC 1 cut(s) 365
NlaIV GGNNCC 6 cut(s) 1202, 1542, 1617, 1870, 2112, 2277
NmuCI GTSAC 3 cut(s) 185, 649, 1063
NruI TCGCGA 1 cut(s) 1196
NsbI TGCGCA 1 cut(s) 1934
NsiI ATGCAT 2 cut(s) 768, 2217
NspI RCATGY 2 cut(s) 808, 1402
PasI CCCWGGG 1 cut(s) 1611
PciSI GCTCTTC 2 cut(s) 111, 1062
PcsI WCGNNNNNNNCGW 1 cut(s) 2025
PctI GAATGC 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 6 cut(s) 35, 631, 742, 1358, 1559, 1778
Pfl23II CGTACG 1 cut(s) 2016
PkrI GCNGC 6 cut(s) 139, 1897, 1900, 1927, 2128, 2224
PleI GAGTC 1 cut(s) 2198
PpsI GAGTC 1 cut(s) 2198
PpuMI RGGWCCY 1 cut(s) 581
PsiI TTATAA 1 cut(s) 2138
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 3 cut(s) 1610, 1719, 1871
PspEI GGTNACC 2 cut(s) 44, 185
PspFI CCCAGC 2 cut(s) 1901, 2172
PspGI CCWGG 3 cut(s) 1610, 1719, 1871
PspLI CGTACG 1 cut(s) 2016
PspN4I GGNNCC 6 cut(s) 1202, 1542, 1617, 1870, 2112, 2277
PspPI GGNCC 6 cut(s) 368, 581, 842, 1026, 1322, 1960
PspPPI RGGWCCY 1 cut(s) 581
PsrI GAACNNNNNNTAC 2 cut(s) 1088, 1120
PstI CTGCAG 1 cut(s) 1477
PstNI CAGNNNCTG 2 cut(s) 110, 1901
PsuI RGATCY 3 cut(s) 973, 1162, 1200
PvuII CAGCTG 1 cut(s) 1898
RruI TCGCGA 1 cut(s) 1196
RsaI GTAC 4 cut(s) 1403, 1870, 2018, 2052
RsaNI GTAC 4 cut(s) 1402, 1869, 2017, 2051
RseI CAYNNNNRTG 8 cut(s) 401, 483, 560, 645, 809, 930, 1112, 1692
Rsr2I CGGWCCG 1 cut(s) 1322
RsrII CGGWCCG 1 cut(s) 1322
SapI GCTCTTC 2 cut(s) 111, 1062
SaqAI TTAA 6 cut(s) 174, 423, 1484, 1649, 1737, 1956
SatI GCNGC 6 cut(s) 138, 1896, 1899, 1926, 2127, 2223
Sau96I GGNCC 6 cut(s) 368, 581, 842, 1026, 1322, 1960
SchI GAGTC 1 cut(s) 2199
ScrFI CCNGG 4 cut(s) 1612, 1721, 1873, 2108
SduI GDGCHC 3 cut(s) 1706, 1758, 2254
SexAI ACCWGGT 1 cut(s) 1871
SfaNI GCATC 8 cut(s) 283, 427, 454, 775, 1198, 1230, 1500, 2202
SfcI CTRYAG 2 cut(s) 1473, 1583
SinI GGWCC 3 cut(s) 581, 1322, 1960
SmiMI CAYNNNNRTG 8 cut(s) 401, 483, 560, 645, 809, 930, 1112, 1692
SmlI CTYRAG 2 cut(s) 422, 1955
SmoI CTYRAG 2 cut(s) 422, 1955
SpeI ACTAGT 1 cut(s) 1271
Sse9I AATT 9 cut(s) 64, 224, 237, 456, 777, 866, 1458, 1661, 2143
SsiI CCGC 5 cut(s) 137, 163, 356, 1405, 1887
SspMI CTAG 4 cut(s) 1272, 1299, 1335, 2048
StyD4I CCNGG 4 cut(s) 1610, 1719, 1871, 2106
StyI CCWWGG 3 cut(s) 936, 962, 1113
TaaI ACNGT 4 cut(s) 899, 1100, 1647, 1868
TaiI ACGT 3 cut(s) 925, 2018, 2022
TaqI TCGA 8 cut(s) 513, 520, 686, 1102, 1125, 1505, 1840, 2028
TaqII GACCGA 1 cut(s) 1339
TasI AATT 9 cut(s) 64, 224, 237, 456, 777, 866, 1458, 1661, 2143
TatI WGTACW 1 cut(s) 2050
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 6 cut(s) 35, 631, 742, 1358, 1559, 1778
Tru1I TTAA 6 cut(s) 174, 423, 1484, 1649, 1737, 1956
Tru9I TTAA 6 cut(s) 174, 423, 1484, 1649, 1737, 1956
TscAI CASTG 3 cut(s) 187, 1268, 1477
TseFI GTSAC 3 cut(s) 185, 649, 1063
TseI GCWGC 5 cut(s) 1895, 1898, 1925, 2126, 2222
Tsp45I GTSAC 3 cut(s) 185, 649, 1063
TspGWI ACGGA 2 cut(s) 305, 1325
TspRI CASTG 3 cut(s) 187, 1268, 1477
Vha464I CTTAAG 2 cut(s) 422, 1955
VneI GTGCAC 1 cut(s) 1702
VpaK11BI GGWCC 3 cut(s) 581, 1322, 1960
XapI RAATTY 5 cut(s) 224, 456, 777, 1458, 1661
XceI RCATGY 2 cut(s) 808, 1402
XcmI CCANNNNNNNNNTGG 2 cut(s) 777, 1970
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 4 cut(s) 1272, 1299, 1335, 2048
Zsp2I ATGCAT 2 cut(s) 768, 2217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.