Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Reverse (-)

18369161 .. 18372645

Gene Structure 3485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCTTGAAGAAGAAGTCAGGTCAAGGGACTCCCCGACGACCGTACCCCACGGTGCCGGCATGCCCGCGCAATCACTCGCTCAAAAGAGACGGTTGCACGCCAACCGGTTTTGGAGCCAAACAAGGAGATCGAAGAAGTTCAAACAGACAATTCCTCCAGTAAAAGTTGAAGATGGCGAGGTTATCACACATGAAAAAACCACAGATGCATTGAGAAGGTCCGTCCACTTCTTCTCAGCGTTGCAGGCAAGCGATGGCCATTGGCCTGCGGAAAATGCCGGCCCTTTGTTTTTCCCTCCTTTGGTCATAGTTATGCACATTACGGGGCATCTTAACAGTGTATTCTCTGAGGGGCATCGCAAAGAAATTCTGCGTTACATGTACTATCATCAGGTATATCAGAATGAAGATGGTGGTTGGGGACTACATGTCGAAGGCCATAGCACCATGTTCAGCACAGCTCTCAGCTACATTTGTATGCGTATTCTCGGAGAAGGACCAGATGATGGTGGCCAAGACAATGCTTGTCCAAGAGCAAGAAAGTGGATTCTTGATCATGGTGGTGTCACACACATACCCGCTTGGGGAAACACTTGGCTTTCGGTAAGGACCAGTAATTATGCTAGGGCTGCCAAATCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

214

Amino Acids

24.16

Weight (kDa)

9.14

Isoelectric Point (pI)

66.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	72 - 202	4e-14	Squalene-hopene cyclase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	66, 269, 579
AcoI	YGGCCR	2 cut(s)	256, 511
AcsI	RAATTY	1 cut(s)	366
AfaI	GTAC	2 cut(s)	45, 383
AfiI	CCNNNNNNNGG	3 cut(s)	301, 506, 584
AflIII	ACRYGT	2 cut(s)	378, 427
AgeI	ACCGGT	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	8, 142, 170
AhdI	GACNNNNNGTC	1 cut(s)	428
AluBI	AGCT	2 cut(s)	461, 468
AluI	AGCT	2 cut(s)	461, 468
Alw26I	GTCTC	1 cut(s)	82
AoxI	GGCC	5 cut(s)	256, 263, 280, 436, 511
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	1 cut(s)	366
AsiGI	ACCGGT	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	4 cut(s)	219, 281, 497, 609
AvaII	GGWCC	3 cut(s)	219, 497, 609
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BalI	TGGCCA	2 cut(s)	258, 513
BanI	GGYRCC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	4 cut(s)	167, 248, 404, 500
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	1 cut(s)	624
BisI	GCNGC	1 cut(s)	630
BlsI	GCNGC	1 cut(s)	631
Bme18I	GGWCC	3 cut(s)	219, 497, 609
BmeRI	GACNNNNNGTC	1 cut(s)	428
BmgT120I	GGNCC	4 cut(s)	219, 281, 497, 609
BmiI	GGNNCC	2 cut(s)	55, 116
BmsI	GCATC	3 cut(s)	196, 337, 364
BpmI	CTGGAG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 506, 584
Bse118I	RCCGGY	3 cut(s)	56, 105, 278
Bse1I	ACTGG	2 cut(s)	158, 612
BseDI	CCNNGG	1 cut(s)	49
BseLI	CCNNNNNNNGG	3 cut(s)	301, 506, 584
BseMII	CTCAG	3 cut(s)	249, 339, 478
BseNI	ACTGG	2 cut(s)	158, 612
BseXI	GCAGC	1 cut(s)	616
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	5 cut(s)	258, 265, 282, 438, 513
BshNI	GGYRCC	1 cut(s)	53
BshTI	ACCGGT	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	57, 106, 279
BslFI	GGGAC	2 cut(s)	41, 435
BslI	CCNNNNNNNGG	3 cut(s)	301, 506, 584
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	41, 435
BsnI	GGCC	5 cut(s)	258, 265, 282, 438, 513
Bsp143I	GATC	2 cut(s)	128, 553
BspACI	CCGC	3 cut(s)	66, 269, 579
BspANI	GGCC	5 cut(s)	258, 265, 282, 438, 513
BspCNI	CTCAG	3 cut(s)	248, 340, 477
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	55, 116
BspT107I	GGYRCC	1 cut(s)	53
BsrFI	RCCGGY	3 cut(s)	56, 105, 278
BsrI	ACTGG	2 cut(s)	158, 612
BssAI	RCCGGY	3 cut(s)	56, 105, 278
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	128, 553
Bst4CI	ACNGT	4 cut(s)	43, 53, 93, 338
BstC8I	GCNNGC	8 cut(s)	58, 62, 66, 99, 246, 250, 267, 280
BstDEI	CTNAG	3 cut(s)	235, 348, 464
BstDSI	CCRYGG	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	131, 556
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	128, 553
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 275, 629
BstNSI	RCATGY	3 cut(s)	64, 382, 431
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	616
BsuRI	GGCC	5 cut(s)	258, 265, 282, 438, 513
BtgI	CCRYGG	1 cut(s)	49
BtgZI	GCGATG	2 cut(s)	267, 341
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	8 cut(s)	58, 62, 66, 99, 246, 250, 267, 280
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	3 cut(s)	56, 105, 278
Cfr13I	GGNCC	4 cut(s)	219, 281, 497, 609
Csp6I	GTAC	2 cut(s)	44, 382
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	6 cut(s)	61, 191, 379, 428, 448, 557
CviQI	GTAC	2 cut(s)	44, 382
DdeI	CTNAG	3 cut(s)	235, 348, 464
DpnI	GATC	2 cut(s)	130, 555
DpnII	GATC	2 cut(s)	128, 553
DriI	GACNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	2 cut(s)	256, 511
Eam1105I	GACNNNNNGTC	1 cut(s)	428
Eco47I	GGWCC	3 cut(s)	219, 497, 609
EcoT22I	ATGCAT	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	6 cut(s)	64, 194, 382, 431, 451, 560
FaqI	GGGAC	2 cut(s)	41, 435
FatI	CATG	6 cut(s)	60, 190, 378, 427, 447, 556
FauI	CCCGC	2 cut(s)	73, 586
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	1 cut(s)	630
Fsp4HI	GCNGC	1 cut(s)	630
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	630
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	5 cut(s)	258, 265, 282, 438, 513
HapII	CCGG	3 cut(s)	57, 106, 279
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	6 cut(s)	64, 194, 382, 431, 451, 560
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	2 cut(s)	29, 547
HpaII	CCGG	3 cut(s)	57, 106, 279
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	3 cut(s)	349, 402, 491
Hpy188III	TCNNGA	1 cut(s)	551
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	210, 428, 488
HpyCH4III	ACNGT	4 cut(s)	43, 53, 93, 338
HpyCH4V	TGCA	4 cut(s)	97, 209, 244, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 275, 629
HpyF3I	CTNAG	3 cut(s)	235, 348, 464
Hsp92II	CATG	6 cut(s)	64, 194, 382, 431, 451, 560
HspAI	GCGC	1 cut(s)	68
KroI	GCCGGC	2 cut(s)	56, 278
KroNI	GCCGGC	2 cut(s)	58, 280
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	128, 553
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	3 cut(s)	196, 337, 364
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	374, 565
MalI	GATC	2 cut(s)	130, 555
MboI	GATC	2 cut(s)	128, 553
MboII	GAAGA	6 cut(s)	20, 23, 145, 182, 223, 419
MlsI	TGGCCA	2 cut(s)	258, 513
MluCI	AATT	3 cut(s)	150, 366, 616
MluNI	TGGCCA	2 cut(s)	258, 513
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	4 cut(s)	165, 172, 306, 343
Mox20I	TGGCCA	2 cut(s)	258, 513
Mph1103I	ATGCAT	1 cut(s)	211
MroNI	GCCGGC	2 cut(s)	56, 278
MroXI	GAANNNNTTC	1 cut(s)	137
MscI	TGGCCA	2 cut(s)	258, 513
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	3 cut(s)	311, 476, 561
Msp20I	TGGCCA	2 cut(s)	258, 513
MspI	CCGG	3 cut(s)	57, 106, 279
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	3 cut(s)	245, 275, 629
NaeI	GCCGGC	2 cut(s)	58, 280
NdeII	GATC	2 cut(s)	128, 553
NgoMIV	GCCGGC	2 cut(s)	56, 278
NlaIII	CATG	6 cut(s)	64, 194, 382, 431, 451, 560
NlaIV	GGNNCC	2 cut(s)	55, 116
NmuCI	GTSAC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	3 cut(s)	64, 382, 431
PaeI	GCATGC	1 cut(s)	64
PciI	ACATGT	2 cut(s)	378, 427
PdiI	GCCGGC	2 cut(s)	58, 280
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	547
PflMI	CCANNNNNTGG	1 cut(s)	506
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	631
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	2 cut(s)	378, 427
PspN4I	GGNNCC	2 cut(s)	55, 116
PspPI	GGNCC	4 cut(s)	219, 281, 497, 609
RsaI	GTAC	2 cut(s)	45, 383
RsaNI	GTAC	2 cut(s)	44, 382
RseI	CAYNNNNRTG	3 cut(s)	311, 476, 561
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	1 cut(s)	630
Sau3AI	GATC	2 cut(s)	128, 553
Sau96I	GGNCC	4 cut(s)	219, 281, 497, 609
SchI	GAGTC	1 cut(s)	23
SetI	ASST	6 cut(s)	23, 183, 221, 396, 463, 470
SfaNI	GCATC	3 cut(s)	196, 337, 364
SinI	GGWCC	3 cut(s)	219, 497, 609
SmiMI	CAYNNNNRTG	3 cut(s)	311, 476, 561
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	3 cut(s)	150, 366, 616
SsiI	CCGC	3 cut(s)	66, 269, 579
SspMI	CTAG	1 cut(s)	624
TaaI	ACNGT	4 cut(s)	43, 53, 93, 338
TaqI	TCGA	2 cut(s)	131, 432
TasI	AATT	3 cut(s)	150, 366, 616
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	565
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	565
TspDTI	ATGAA	2 cut(s)	207, 420
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	506
VpaK11BI	GGWCC	3 cut(s)	219, 497, 609
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	3 cut(s)	64, 382, 431
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	624
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.