Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Forward (+)

66420445 .. 66424988

Gene Structure 4544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGAAGATTCCTCGGCTTACATTTACAGCACAAACAACTTCGTGGGAAGGCAGACATGGGAGTTTGATCCCGAAGCAGGAACTGCTGAAGAGAGAGCTGAGGTTGAAGCGGCTTGTCTTCATTTCTACAACAACCGCTATCAGGTTAAGCCCAGTGGCGACCTTCTTTGGCGGATGCATTTCCTAAGAGAGAAAAAGTTCATTCAGACAATTCCTCCGGTAAAAGTTGAAGATGGTGAGGTTATAACCTATGAAAAAACCATAGATGCACTGAGAAGGTCTGTCCACTTCTTCTCAGCATTGCAGGCAAGCGATGGCCATTGGCCTGCTGAAAATGCTGGCCCTTTGTTTTTCCTTCCTCCTTTGGTCATATGTATGTATATTATGGGACATCTTAATAGTGTATTCCCCGAAGAGCATCGGAAAGAAATTCTGCGTTACCTGTACTATCATCTGAATGACGATGGTGGCTGGGGACTACACATCAAAGGTCATAACACCATGTTCAGCACAGCTCTCAGCTATATTTGTATGCGTATTCTCGGAGAAGGACCTGATGATGATGGGGGCCAAGACAATGCTTGTCCAAGAGCTAGAAAGTGGATTCTTGATCATGATGGTGTCACACACATGCCCTCTTGGGGAAAGACTTGGCTTTCGATACTTGGTTTGTTTGATTGGTCTGGAAGCAACCCTATTCCCCCAGAGTTTTGGATTCTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

250

Amino Acids

28.71

Weight (kDa)

5.53

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	101 - 250	1.8e-21	Squalene-hopene cyclase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AciI	CCGC	3 cut(s)	137, 163, 199
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	104, 169, 668
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	134, 257
AluBI	AGCT	5 cut(s)	10, 125, 542, 549, 620
AluI	AGCT	5 cut(s)	10, 125, 542, 549, 620
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	4 cut(s)	343, 350, 367, 595
ApoI	RAATTY	1 cut(s)	456
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
Asp700I	GAANNNNTTC	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	368, 578, 595
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	126
BccI	CCATC	5 cut(s)	254, 335, 485, 584, 638
BclI	TGATCA	1 cut(s)	637
BfaI	CTAG	1 cut(s)	621
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	3 cut(s)	368, 578, 595
BmiI	GGNNCC	1 cut(s)	596
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	3 cut(s)	192, 283, 454
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 169, 668
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	3 cut(s)	104, 169, 668
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	4 cut(s)	117, 290, 336, 559
BseNI	ACTGG	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	498
BshFI	GGCC	4 cut(s)	345, 352, 369, 597
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	2 cut(s)	429, 516
BslI	CCNNNNNNNGG	3 cut(s)	104, 169, 668
BsmFI	GGGAC	2 cut(s)	429, 516
BsnI	GGCC	4 cut(s)	345, 352, 369, 597
Bsp143I	GATC	2 cut(s)	94, 637
BspACI	CCGC	3 cut(s)	137, 163, 199
BspANI	GGCC	4 cut(s)	345, 352, 369, 597
BspCNI	CTCAG	4 cut(s)	118, 291, 335, 558
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	596
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	435
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	94, 637
Bst6I	CTCTTC	2 cut(s)	111, 435
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	4 cut(s)	333, 337, 354, 367
BstDEI	CTNAG	5 cut(s)	126, 212, 299, 322, 545
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	97, 640
BstMBI	GATC	2 cut(s)	94, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 332, 362
BstNSI	RCATGY	1 cut(s)	661
BstV2I	GAAGAC	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	738
BsuRI	GGCC	4 cut(s)	345, 352, 369, 597
BtgZI	GCGATG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	187, 296
Cac8I	GCNNGC	4 cut(s)	333, 337, 354, 367
CaiI	CAGNNNCTG	1 cut(s)	110
CciI	TCATGA	1 cut(s)	640
Cfr13I	GGNCC	3 cut(s)	368, 578, 595
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	84, 529, 641, 658
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	5 cut(s)	126, 212, 299, 322, 545
DpnI	GATC	2 cut(s)	96, 639
DpnII	GATC	2 cut(s)	94, 637
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	111, 435
EarI	CTCTTC	2 cut(s)	111, 435
EciI	GGCGGA	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	207
FaeI	CATG	4 cut(s)	87, 532, 644, 661
FaqI	GGGAC	2 cut(s)	429, 516
FatI	CATG	4 cut(s)	83, 528, 640, 657
FauNDI	CATATG	1 cut(s)	398
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	621
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	1 cut(s)	502
HaeIII	GGCC	4 cut(s)	345, 352, 369, 597
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	4 cut(s)	87, 532, 644, 661
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	35, 631, 742
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	4 cut(s)	234, 450, 483, 572
Hpy188III	TCNNGA	4 cut(s)	98, 635, 641, 711
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	6 cut(s)	17, 69, 200, 297, 392, 569
HpyCH4V	TGCA	4 cut(s)	20, 205, 296, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 332, 362
HpyF3I	CTNAG	5 cut(s)	126, 212, 299, 322, 545
Hsp92II	CATG	4 cut(s)	87, 532, 644, 661
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	2 cut(s)	94, 637
LguI	GCTCTTC	1 cut(s)	435
LweI	GCATC	3 cut(s)	192, 283, 454
MaeI	CTAG	1 cut(s)	621
MaeIII	GTNAC	2 cut(s)	464, 649
MalI	GATC	2 cut(s)	96, 639
MboI	GATC	2 cut(s)	94, 637
MboII	GAAGA	7 cut(s)	44, 128, 137, 269, 310, 452, 737
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	2 cut(s)	237, 456
MluNI	TGGCCA	1 cut(s)	345
MnlI	CCTC	6 cut(s)	49, 121, 252, 259, 396, 673
Mox20I	TGGCCA	1 cut(s)	345
Mph1103I	ATGCAT	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	4 cut(s)	12, 174, 423, 751
MslI	CAYNNNNRTG	4 cut(s)	401, 483, 645, 656
Msp20I	TGGCCA	1 cut(s)	345
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	110, 332, 362
NdeI	CATATG	1 cut(s)	398
NdeII	GATC	2 cut(s)	94, 637
NlaIII	CATG	4 cut(s)	87, 532, 644, 661
NlaIV	GGNNCC	1 cut(s)	596
NmeAIII	GCCGAG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	649
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	1 cut(s)	661
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	35, 631, 742
PkrI	GCNGC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	578
PsiI	TTATAA	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	596
PspPI	GGNCC	3 cut(s)	368, 578, 595
PspPPI	RGGWCCY	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	4 cut(s)	401, 483, 645, 656
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	4 cut(s)	12, 174, 423, 751
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	94, 637
Sau96I	GGNCC	3 cut(s)	368, 578, 595
SfaNI	GCATC	3 cut(s)	192, 283, 454
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	4 cut(s)	401, 483, 645, 656
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	237, 456
SsiI	CCGC	3 cut(s)	137, 163, 199
SspMI	CTAG	1 cut(s)	621
TaqI	TCGA	1 cut(s)	686
TasI	AATT	2 cut(s)	237, 456
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	3 cut(s)	35, 631, 742
Tru1I	TTAA	4 cut(s)	12, 174, 423, 751
Tru9I	TTAA	4 cut(s)	12, 174, 423, 751
TscAI	CASTG	2 cut(s)	187, 303
TseFI	GTSAC	1 cut(s)	649
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	3 cut(s)	137, 217, 294
TspRI	CASTG	2 cut(s)	187, 303
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	1 cut(s)	621
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.