Rh2CG452200

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000173
Physical Location & Seq
Forward (+)
61413926 .. 61450189
36264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG452200.1

Sequence Viewer

Length: 408 bp
ATGTGGAAGCTTAGGTTTGGAGATGAAGGTGCAAATAATGACCCTTACTTGTTCAGCACAAACAACTTCCATGGGAGGCAAACATGGGACTTCGACCCGGCTGCCGGCACACCTAAAGAGCGAGCAGAGGTGGAAGAAGTTCGGCTAAGTTTTTACAACAATCGTCACCGAGTCCAGGCTTGTAGTGACCTCCTCAGTCGAATGCAGATCTATACACCTCTTCAAGGCGACCGGTCGAATTTGGTGCAGACTGCAATGGGACTAATGGGATTAATTCATGGTGGACAGGAAGCAGAGTGGGGTAAGTCCAAAACTCCGGGGGTATATAGGGATCATAAACACCAAGTATATGTAACACAAGAAGTAAACTCAGCCAACGATATCATGCATGATACAAATCCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

135

Amino Acids

15.41

Weight (kDa)

6.04

Isoelectric Point (pI)

25.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 339
AcsI RAATTY 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 104, 175, 224
AgeI ACCGGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AlwI GGATC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 238
AseI ATTAAT 1 cut(s) 272
AsiGI ACCGGT 1 cut(s) 231
Asp700I GAANNNNTTC 1 cut(s) 138
AsuC2I CCSGG 2 cut(s) 98, 318
AsuHPI GGTGA 1 cut(s) 158
BbvI GCAGC 1 cut(s) 88
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 226, 260
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 2 cut(s) 98, 318
BglII AGATCT 1 cut(s) 207
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 3 cut(s) 98, 176, 318
BmrFI CCNGG 3 cut(s) 98, 176, 318
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 2 cut(s) 98, 318
BsaBI GATNNNNATC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 70, 317
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 175, 224
Bse118I RCCGGY 2 cut(s) 104, 231
Bse3DI GCAATG 1 cut(s) 261
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 70, 317
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 3 cut(s) 104, 175, 224
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 208, 384
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 266
Bsh1285I CGRYCG 2 cut(s) 232, 236
BshTI ACCGGT 1 cut(s) 231
BsiEI CGRYCG 2 cut(s) 232, 236
BsiSI CCGG 4 cut(s) 98, 105, 232, 317
BslFI GGGAC 2 cut(s) 101, 273
BslI CCNNNNNNNGG 3 cut(s) 104, 175, 224
BsmFI GGGAC 2 cut(s) 101, 273
BsmI GAATGC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 207, 331
Bsp19I CCATGG 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 207, 383
BspPI GGATC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 261
BsrFI RCCGGY 2 cut(s) 104, 231
BssAI RCCGGY 2 cut(s) 104, 231
BssECI CCNNGG 2 cut(s) 70, 317
BssMI GATC 2 cut(s) 207, 331
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 106, 123
BstDEI CTNAG 4 cut(s) 11, 146, 194, 370
BstDSI CCRYGG 1 cut(s) 70
BstENI CCTNNNNNAGG 1 cut(s) 222
BstKTI GATC 2 cut(s) 210, 334
BstMBI GATC 2 cut(s) 207, 331
BstMCI CGRYCG 2 cut(s) 232, 236
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 3 cut(s) 96, 174, 316
BstV1I GCAGC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 106, 123
Cfr10I RCCGGY 2 cut(s) 104, 231
CspAI ACCGGT 1 cut(s) 231
CviAII CATG 5 cut(s) 71, 84, 278, 385, 389
CviJI RGCY 5 cut(s) 10, 101, 145, 179, 374
CviKI_1 RGCY 5 cut(s) 10, 101, 145, 179, 374
DdeI CTNAG 4 cut(s) 11, 146, 194, 370
DpnI GATC 2 cut(s) 209, 333
DpnII GATC 2 cut(s) 207, 331
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 70
Eco32I GATATC 1 cut(s) 382
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 174
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 5 cut(s) 74, 87, 281, 388, 392
FaqI GGGAC 2 cut(s) 101, 273
FatI CATG 5 cut(s) 70, 83, 277, 384, 388
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
HapII CCGG 4 cut(s) 98, 105, 232, 317
Hin1II CATG 5 cut(s) 74, 87, 281, 388, 392
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 171
HpaII CCGG 4 cut(s) 98, 105, 232, 317
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 284, 367
Hpy8I GTNNAC 2 cut(s) 284, 367
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 5 cut(s) 32, 205, 247, 254, 388
HpyF3I CTNAG 4 cut(s) 11, 146, 194, 370
Hsp92II CATG 5 cut(s) 74, 87, 281, 388, 392
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 207, 331
LpnPI CCDG 7 cut(s) 111, 118, 161, 188, 245, 272, 330
Lsp1109I GCAGC 1 cut(s) 88
MaeIII GTNAC 3 cut(s) 164, 185, 352
MalI GATC 2 cut(s) 209, 333
MboI GATC 2 cut(s) 207, 331
MboII GAAGA 2 cut(s) 146, 212
MflI RGATCY 1 cut(s) 207
MluCI AATT 2 cut(s) 238, 273
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 5 cut(s) 69, 121, 200, 203, 228
Mph1103I ATGCAT 1 cut(s) 390
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 1 cut(s) 272
MspI CCGG 4 cut(s) 98, 105, 232, 317
MspR9I CCNGG 3 cut(s) 98, 176, 318
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 1 cut(s) 176
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 2 cut(s) 98, 318
NcoI CCATGG 1 cut(s) 70
NdeII GATC 2 cut(s) 207, 331
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 5 cut(s) 74, 87, 281, 388, 392
NmuCI GTSAC 2 cut(s) 164, 185
NsiI ATGCAT 1 cut(s) 390
PctI GAATGC 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 138
PinAI ACCGGT 1 cut(s) 231
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PshBI ATTAAT 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 207
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 207, 331
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 3 cut(s) 98, 176, 318
SetI ASST 7 cut(s) 12, 17, 31, 115, 132, 192, 220
Sse9I AATT 2 cut(s) 238, 273
StyD4I CCNGG 3 cut(s) 96, 174, 316
StyI CCWWGG 1 cut(s) 70
TaqI TCGA 3 cut(s) 93, 199, 236
TasI AATT 2 cut(s) 238, 273
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseFI GTSAC 2 cut(s) 164, 185
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 2 cut(s) 164, 185
TspDTI ATGAA 2 cut(s) 39, 266
VspI ATTAAT 1 cut(s) 272
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.