Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017472.1

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Forward (+)

634 .. 2571

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017472.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgtggaagcttaaggttgcagaaggtggagaagactcctcggcttacatttccagcactaacaacttcgtgggaaggcagacttgggagtttgatcctgacgcaggaactgctgaagagcgagctgaggttgaagcggctcgtcttcatttctacaacaaccgccatcaggttaagcccagtggtgaccttctttggagattgcagttcctaagggagaagaagttcaaacagacaattcctccagtaaaagttgaagatggcgaggttatcacacatgaaaaaaccacagatgcgctgagaaggtctgtccgcttcttctcagcgttgcaggcaagcgatggccattggcctgcagaaaatgccggccctttgtttttccttcctcctttgcccagggcccagcgcttcaactccactccgatcggcgatggcagcttggattccctactgggaagcttcgattgggccagccacgatgccgctaacgccactacttcttcattcttcttctgcctgcgttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

175

Amino Acids

19.69

Weight (kDa)

5.95

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	137, 163, 313, 483
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	135
AfeI	AGCGCT	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	104, 169
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	4 cut(s)	134, 229, 257, 412
AjnI	CCWGG	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	4 cut(s)	67, 99, 448, 480
AloI	GAACNNNNNNTCC	2 cut(s)	209, 241
AluBI	AGCT	4 cut(s)	10, 125, 438, 459
AluI	AGCT	4 cut(s)	10, 125, 438, 459
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	407
AoxI	GGCC	5 cut(s)	343, 350, 367, 399, 468
ApaI	GGGCCC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	298, 408
AspS9I	GGNCC	4 cut(s)	368, 399, 400, 468
AsuHPI	GGTGA	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	2 cut(s)	39, 137
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	4 cut(s)	174, 254, 335, 425
BciT130I	CCWGG	1 cut(s)	397
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	409
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	3 cut(s)	138, 436, 483
BlsI	GCNGC	3 cut(s)	139, 437, 484
Bme1390I	CCNGG	1 cut(s)	397
BmgT120I	GGNCC	4 cut(s)	368, 399, 400, 468
BmiI	GGNNCC	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	397
BmrI	ACTGGG	2 cut(s)	174, 461
BmsI	GCATC	2 cut(s)	283, 469
BmuI	ACTGGG	2 cut(s)	174, 461
BpiI	GAAGAC	2 cut(s)	39, 137
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	39, 395, 396
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 226, 239, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 169
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	3 cut(s)	180, 245, 456
Bse21I	CCTNAGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	3 cut(s)	39, 395, 396
BseLI	CCNNNNNNNGG	2 cut(s)	104, 169
BseMII	CTCAG	3 cut(s)	117, 290, 336
BseNI	ACTGG	3 cut(s)	180, 245, 456
BseRI	GAGGAG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	447
BseYI	CCCAGC	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	5 cut(s)	345, 352, 369, 401, 470
BsiEI	CGRYCG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	104, 169
BsnI	GGCC	5 cut(s)	345, 352, 369, 401, 470
Bsp120I	GGGCCC	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	94, 423
BspACI	CCGC	4 cut(s)	137, 163, 313, 483
BspANI	GGCC	5 cut(s)	345, 352, 369, 401, 470
BspCNI	CTCAG	3 cut(s)	118, 291, 335
BspLI	GGNNCC	1 cut(s)	401
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	3 cut(s)	180, 245, 456
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	39, 395, 396
BssMI	GATC	2 cut(s)	94, 423
Bst2UI	CCWGG	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	2 cut(s)	110, 362
BstC8I	GCNNGC	7 cut(s)	123, 333, 337, 354, 367, 472, 518
BstDEI	CTNAG	4 cut(s)	126, 212, 299, 322
BstEII	GGTNACC	1 cut(s)	185
BstENI	CCTNNNNNAGG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	2 cut(s)	298, 408
BstKTI	GATC	2 cut(s)	97, 426
BstMBI	GATC	2 cut(s)	94, 423
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	5 cut(s)	110, 332, 362, 435, 488
BstNI	CCWGG	1 cut(s)	397
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	395
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	447
BstV2I	GAAGAC	2 cut(s)	39, 137
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	5 cut(s)	345, 352, 369, 401, 470
BtgZI	GCGATG	2 cut(s)	354, 444
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	7 cut(s)	123, 333, 337, 354, 367, 472, 518
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	2 cut(s)	298, 408
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	4 cut(s)	368, 399, 400, 468
CseI	GACGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	278
DdeI	CTNAG	4 cut(s)	126, 212, 299, 322
DpnI	GATC	2 cut(s)	96, 425
DpnII	GATC	2 cut(s)	94, 423
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	403
Eco47III	AGCGCT	1 cut(s)	407
Eco57I	CTGAAG	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	102
EcoO109I	RGGNCCY	1 cut(s)	399
EcoO65I	GGTNACC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	403
FaeI	CATG	1 cut(s)	281
FaiI	YATR	1 cut(s)	279
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	138, 436, 483
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	3 cut(s)	138, 436, 483
GlaI	GCGC	2 cut(s)	297, 407
GluI	GCNGC	3 cut(s)	138, 436, 483
GsaI	CCCAGC	1 cut(s)	406
GsuI	CTGGAG	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	409
HaeIII	GGCC	5 cut(s)	345, 352, 369, 401, 470
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	2 cut(s)	298, 408
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	2 cut(s)	296, 406
HinP1I	GCGC	2 cut(s)	296, 406
HindIII	AAGCTT	2 cut(s)	8, 457
HinfI	GANTC	2 cut(s)	35, 443
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	1 cut(s)	197
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	2 cut(s)	98, 525
HpyAV	CCTTC	5 cut(s)	17, 69, 200, 297, 392
HpyCH4V	TGCA	4 cut(s)	20, 205, 331, 356
HpyF10VI	GCNNNNNNNGC	5 cut(s)	110, 332, 362, 435, 488
HpyF3I	CTNAG	4 cut(s)	126, 212, 299, 322
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	2 cut(s)	296, 406
KroI	GCCGGC	1 cut(s)	365
KroNI	GCCGGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	94, 423
LguI	GCTCTTC	1 cut(s)	111
Lsp1109I	GCAGC	1 cut(s)	447
LweI	GCATC	2 cut(s)	283, 469
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	96, 425
MboI	GATC	2 cut(s)	94, 423
MboII	GAAGA	9 cut(s)	44, 128, 137, 232, 269, 310, 492, 499, 502
MhlI	GDGCHC	1 cut(s)	403
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	1 cut(s)	237
MluNI	TGGCCA	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	5 cut(s)	49, 121, 252, 259, 396
Mox20I	TGGCCA	1 cut(s)	345
MroNI	GCCGGC	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	2 cut(s)	12, 174
Msp20I	TGGCCA	1 cut(s)	345
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	5 cut(s)	110, 332, 362, 435, 488
NaeI	GCCGGC	1 cut(s)	367
NdeII	GATC	2 cut(s)	94, 423
NgoMIV	GCCGGC	1 cut(s)	365
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	1 cut(s)	401
NmeAIII	GCCGAG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	185
PasI	CCCWGGG	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	443
PkrI	GCNGC	3 cut(s)	139, 437, 484
Ple19I	CGATCG	1 cut(s)	426
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	395
PspEI	GGTNACC	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	401
PspOMI	GGGCCC	1 cut(s)	399
PspPI	GGNCC	4 cut(s)	368, 399, 400, 468
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	110
PvuI	CGATCG	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	12, 174
SatI	GCNGC	3 cut(s)	138, 436, 483
Sau3AI	GATC	2 cut(s)	94, 423
Sau96I	GGNCC	4 cut(s)	368, 399, 400, 468
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	397
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	2 cut(s)	283, 469
SfcI	CTRYAG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	4 cut(s)	137, 163, 313, 483
StyD4I	CCNGG	1 cut(s)	395
TaqI	TCGA	1 cut(s)	462
TasI	AATT	1 cut(s)	237
TauI	GCSGC	2 cut(s)	140, 485
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	12, 174
Tru9I	TTAA	2 cut(s)	12, 174
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	137, 294, 492
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	11
XagI	CCTNNNNNAGG	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.