Rh2AG465700

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
68440136 .. 68468498
28363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG465700.1

Sequence Viewer

Length: 510 bp
ATGTGGAAGCTTAGGTTTGGAGATGAAGGTGCAAATAATGACCCTTACTTGTTCAGCACAAACAACTTCCATGGGAGGCAAACATGGGACTTCGACCCGGCTGCCGGCACACCTAAAGAGCGAGCAGAGGTGGAAGAAGTTCGGCTAAGTTTTTACAACAATCGTCACCGAGTCCAGGCTTGTAGTGACCTCCTCAGTCGAATGCAGCTTCTGGGAGAGAAAAAGTTCAAACAAAAGATTCCCCAAGTAAAGGTGGAGGATGGTGAGGACTGTACATATGAAAAGGCCACCGCTGCATTTAGAAGGGCAGCTACCTTCTACTCTGCCTTGCAATCACCTCATGGCCATTGGCCTGCTGAAAATGCCGGTCCCATGTTTTATATTCCTCCCTTGTTTCCAAAGCTTATGGCACCAAAATACGTTTCTTTGACAATGTCGGATAAGCTAATAATATCGTATAAAGCCAAGTTTGTAGGCATCAAACTATACACTTTCAAGGAGGCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

169

Amino Acids

19.49

Weight (kDa)

9.28

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 409
AciI CCGC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 343
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 3 cut(s) 104, 175, 250
AgsI TTSAA 2 cut(s) 229, 496
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 406, 438
AluBI AGCT 5 cut(s) 10, 208, 311, 403, 445
AluI AGCT 5 cut(s) 10, 208, 311, 403, 445
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 3 cut(s) 285, 343, 350
ApeKI GCWGC 4 cut(s) 101, 205, 293, 308
Asp700I GAANNNNTTC 2 cut(s) 138, 224
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 158, 275, 327
AvaII GGWCC 1 cut(s) 368
BalI TGGCCA 1 cut(s) 345
BanI GGYRCC 1 cut(s) 409
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
BbvI GCAGC 4 cut(s) 88, 217, 280, 320
BccI CCATC 1 cut(s) 254
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 1 cut(s) 98
BisI GCNGC 4 cut(s) 102, 206, 294, 309
BlsI GCNGC 4 cut(s) 103, 207, 295, 310
Bme1390I CCNGG 2 cut(s) 98, 176
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 2 cut(s) 370, 411
BmrFI CCNGG 2 cut(s) 98, 176
BmsI GCATC 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 175, 250
Bse118I RCCGGY 2 cut(s) 104, 365
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 104, 175, 250
BseMII CTCAG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 4 cut(s) 88, 217, 280, 320
BshFI GGCC 3 cut(s) 287, 345, 352
BshNI GGYRCC 1 cut(s) 409
BsiSI CCGG 3 cut(s) 98, 105, 366
BslFI GGGAC 2 cut(s) 101, 354
BslI CCNNNNNNNGG 3 cut(s) 104, 175, 250
BsmFI GGGAC 2 cut(s) 101, 354
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 3 cut(s) 287, 345, 352
Bsp1407I TGTACA 1 cut(s) 272
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 1 cut(s) 291
BspANI GGCC 3 cut(s) 287, 345, 352
BspCNI CTCAG 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 370, 411
BspT107I GGYRCC 1 cut(s) 409
BsrFI RCCGGY 2 cut(s) 104, 365
BsrGI TGTACA 1 cut(s) 272
BssAI RCCGGY 2 cut(s) 104, 365
BssECI CCNNGG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 106, 123, 354
BstDEI CTNAG 3 cut(s) 11, 146, 194
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 293, 362
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 96, 174
BstV1I GCAGC 4 cut(s) 88, 217, 280, 320
BsuRI GGCC 3 cut(s) 287, 345, 352
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 106, 123, 354
CaiI CAGNNNCTG 1 cut(s) 211
Cfr10I RCCGGY 2 cut(s) 104, 365
Cfr13I GGNCC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 273
CviAII CATG 4 cut(s) 71, 84, 341, 373
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 3 cut(s) 11, 146, 194
EaeI YGGCCR 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 4 cut(s) 74, 87, 344, 376
FaqI GGGAC 2 cut(s) 101, 354
FatI CATG 4 cut(s) 70, 83, 340, 372
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 4 cut(s) 102, 206, 294, 309
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 4 cut(s) 102, 206, 294, 309
GluI GCNGC 4 cut(s) 102, 206, 294, 309
HaeIII GGCC 3 cut(s) 287, 345, 352
HapII CCGG 3 cut(s) 98, 105, 366
Hin1II CATG 4 cut(s) 74, 87, 344, 376
HindIII AAGCTT 2 cut(s) 8, 401
HinfI GANTC 2 cut(s) 171, 238
HpaII CCGG 3 cut(s) 98, 105, 366
HphI GGTGA 3 cut(s) 158, 275, 327
Hpy188I TCNGA 1 cut(s) 439
HpyAV CCTTC 3 cut(s) 20, 297, 325
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 4 cut(s) 32, 205, 296, 331
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 362
HpyF3I CTNAG 3 cut(s) 11, 146, 194
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 4 cut(s) 74, 87, 344, 376
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
LpnPI CCDG 7 cut(s) 111, 118, 161, 188, 197, 366, 379
Lsp1109I GCAGC 4 cut(s) 88, 217, 280, 320
LweI GCATC 1 cut(s) 486
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 164, 185
MboII GAAGA 1 cut(s) 146
MlsI TGGCCA 1 cut(s) 345
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 9 cut(s) 69, 121, 200, 203, 250, 259, 348, 396, 493
Mox20I TGGCCA 1 cut(s) 345
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 2 cut(s) 138, 224
MscI TGGCCA 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 3 cut(s) 98, 105, 366
MspR9I CCNGG 2 cut(s) 98, 176
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 293, 362
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 70
NdeI CATATG 1 cut(s) 277
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 4 cut(s) 74, 87, 344, 376
NlaIV GGNNCC 2 cut(s) 370, 411
NmuCI GTSAC 2 cut(s) 164, 185
PctI GAATGC 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 2 cut(s) 138, 224
PfeI GAWTC 1 cut(s) 238
PflFI GACNNNGTC 1 cut(s) 433
PkrI GCNGC 4 cut(s) 103, 207, 295, 310
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 370, 411
PspPI GGNCC 1 cut(s) 368
PstNI CAGNNNCTG 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 433
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SatI GCNGC 4 cut(s) 102, 206, 294, 309
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 2 cut(s) 98, 176
SfaNI GCATC 1 cut(s) 486
SinI GGWCC 1 cut(s) 368
SsiI CCGC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 96, 174
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 423
TaqI TCGA 2 cut(s) 93, 199
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 1 cut(s) 238
TseFI GTSAC 2 cut(s) 164, 185
TseI GCWGC 4 cut(s) 101, 205, 293, 308
Tsp45I GTSAC 2 cut(s) 164, 185
TspDTI ATGAA 2 cut(s) 39, 294
Tth111I GACNNNGTC 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 368
XmnI GAANNNNTTC 2 cut(s) 138, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.