AT1G78955

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000173
Physical Location & Seq
Reverse (-)
29688906 .. 29694255
5350 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78955.3

Sequence Viewer

Length: 2310 bp
ATGTGGAAGTTGAAGATAGCAAATGGAAACAAAGAAGAGCCCTACTTGTTCAGTACCAACAACTTCCTCGGAAGACAGACATGGGAGTTTGATCCGGACGCCGGCACAGTGGAGGAACTAGCTGCCGTCGAAGAAGCTCGTCGGAAATTTTATGATGATCGTTTTCGTGTTAAAGCTAGCAGCGATCTCATATGGCGTATGCAGTTTTTAAAGGAGAAGAAATTCGAGCAAGTTATACCTCCGGCGAAGGTTGAAGATGCCAATAATATCACGAGCGAAATAGCTACAAATGCGTTAAGGAAAGGGGTTAATTTCTTATCAGCATTGCAGGCCAGTGATGGCCATTGGCCTGCTGAAAATGCTGGTCCTTTATTCTTCCTTCCTCCATTGGTTTTCTGTCTATACGTCACTGGACATCTCCATGAGATTTTCACTCAAGACCATCGTCGAGAGGTCCTTAGATACATCTACTGTCACCAGAATGAAGATGGTGGGTGGGGATTACACATAGAAGGAAACAGCACCATGTTCTGCACCACACTAAACTACATTTGCATGCGCATACTTGGAGAAGGTCCAAATGGAGGACCAGGAAACGCGTGCAAACGGGCCAGGGATTGGATTCTTGACCATGGTGGTGCAACATACATACCTTCTTGGGGCAAAACTTGGCTTTCGATACTTGGTGTCTTTGATTGGTCAGGAAGCAACCCCATGCCTCCAGAGTTTTGGATCCTACCTTCCTTTCTTCCAATACATCCAGCGAAAATGTGGTGTTACTGCCGGTTGGTTTACATGCCAATGTCTTATCTTTACGGGAAGAGATTCGTTGGTCCAATAAGTCCTCTTATTCTGCAACTACGCGAAGAAATTTACTTGCAGCCTTATGCGAAAATAAACTGGAATAGAGCTCGCCATCTATGTGCAAAGGAAGATGCGTACTGTCCTCATCCACAAATTCAAGATGTTATATGGAACTGCCTTTACATCTTCACCGAACCGTTTCTTGCATGTTGGCCATTTAACAAGCTGCTAAGGGAAAAAGCTCTTGGGGTGGCAATGAAACACATACATTATGAAGACGAAAATAGCCGTTATATTACCATTGGATGTGTTGAAAAGGCATTATGCATGCTTGCGTGTTGGGTTGAAGACCCTAACGGAATTCATTTCAAAAAGCATCTTTTGAGGATTTCTGATTACTTGTGGATTGCAGAAGATGGGATGAAAATGCAGAGCTTTGGAAGTCAATTATGGGATTCGGGGTTTGCCCTCCAAGCGTTAGTTGCAAGTAATCTCGTGAACGAAATCCCAGATGTACTCAGGAGAGGATATGACTTTTTGAAAAATTCTCAGGTTAGAGAGAACCCTTCGGGTGACTTTACAAACATGTACCGTCACATATCCAAAGGGTCGTGGACTTTCTCTGATCGAGATCATGGATGGCAAGCTTCCGACTGCACAGCCGAAAGTTTCAAGTGTTGCCTGTTGCTTTCAATGATACCACCTGACATTGTTGGCCCGAAAATGGATCCCGAACAGTTATATGAGGCTGTTACTATCTTACTGTCTCTACAGAGTAAAAATGGAGGTGTAACTGCTTGGGAGCCTGCCCGTGGACAAGAATGGTTGGAATTGCTAAACCCTACTGAAGTTTTTGCTGACATTGTGGTTGAGCACGAGTACAATGAGTGTACTTCATCAGCGATCCAAGCTTTGATTCTTTTCAAGCAACTATATCCGAATCACAGGACAGAAGAGATCAACACTTCCATCAAGAAAGCCGTGCAATACATAGAGAGCATACAAATGCTTGATGGTTCATGGTACGGAAGCTGGGGAGTTTGCTTCACATACAGTACATGGTTTGGTCTGGGAGGCCTTGCAGCTGCTGGAAAGACATACAACAACTGCTTGGCTATGCGTAAAGGCGTTCATTTCCTTCTCACAACTCAAAAAGATAATGGAGGTTGGGGTGAAAGCTACTTGTCATGTCCTAAAAAGAGATACATTCCAAGTGAAGGAGAGCGGTCAAACTTGGTGCAAACCTCTTGGGCAATGATGGGTTTACTTCATGCTGGACAGGCCGAGCGAGATCCGTCTCCTCTTCACCGTGCTGCAAAGCTCTTAATCAACTCTCAACTGGAGAATGGCGATTTTCCTCAGCAGGAGATAACTGGAGCTTTCATGAAGAACTGCTTGTTACACTACGCAGCATACAGAAACATCTTCCCCGTGTGGGCACTCGCAGAGTATAGGAGACGAGTTCCTTTGCCGTATGAAAAACCTTCAACAGAGAGAAGAAGTTAG

Protein Analysis

769

Amino Acids

88.15

Weight (kDa)

6.44

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 38 - 238 1.9e-33 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 351 - 599 1.5e-29 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 560
AccB7I CCANNNNNTGG 1 cut(s) 618
AccBSI CCGCTC 1 cut(s) 2029
AccII CGCG 2 cut(s) 599, 864
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 1 cut(s) 2029
AclWI GGATC 7 cut(s) 86, 727, 740, 1526, 1539, 1702, 2090
AcoI YGGCCR 2 cut(s) 340, 1016
AcsI RAATTY 6 cut(s) 146, 221, 870, 957, 1164, 1348
AcuI CTGAAG 1 cut(s) 1671
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 8 cut(s) 55, 941, 1320, 1394, 1685, 1696, 1829, 1861
AfiI CCNNNNNNNGG 8 cut(s) 101, 584, 618, 659, 1528, 1616, 2021, 2239
AflIII ACRYGT 2 cut(s) 597, 1389
AjnI CCWGG 2 cut(s) 589, 611
AjuI GAANNNNNNNTTGG 4 cut(s) 1032, 1064, 1704, 1736
Alw21I GWGCWC 2 cut(s) 913, 1680
Alw26I GTCTC 3 cut(s) 1575, 2106, 2254
AlwI GGATC 7 cut(s) 86, 727, 740, 1526, 1539, 1702, 2090
AlwNI CAGNNNCTG 1 cut(s) 1892
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 8 cut(s) 330, 340, 347, 609, 1016, 1519, 1879, 2085
ApeKI GCWGC 8 cut(s) 122, 180, 880, 1030, 1886, 1889, 2117, 2213
ApoI RAATTY 6 cut(s) 146, 221, 870, 957, 1164, 1348
Asp700I GAANNNNTTC 3 cut(s) 221, 824, 1002
AspLEI GCGC 1 cut(s) 561
AspS9I GGNCC 7 cut(s) 365, 454, 575, 587, 609, 833, 1520
AsuHPI GGTGA 5 cut(s) 467, 985, 1388, 1988, 2102
AsuNHI GCTAGC 1 cut(s) 176
AvaII GGWCC 5 cut(s) 365, 454, 575, 587, 833
BaeGI GKGCMC 1 cut(s) 2245
BalI TGGCCA 2 cut(s) 342, 1018
BamHI GGATCC 2 cut(s) 732, 1531
BanII GRGCYC 2 cut(s) 42, 913
BauI CACGAG 3 cut(s) 271, 1298, 1679
BbsI GAAGAC 3 cut(s) 79, 1086, 1158
Bbv12I GWGCWC 2 cut(s) 913, 1680
BbvCI CCTCAGC 1 cut(s) 2163
BbvI GCAGC 8 cut(s) 109, 192, 892, 1017, 1876, 1898, 2104, 2225
BccI CCATC 9 cut(s) 332, 450, 482, 924, 1214, 1437, 1781, 1811, 2056
BceAI ACGGC 4 cut(s) 110, 1077, 1769, 2260
BciT130I CCWGG 2 cut(s) 591, 613
BcoDI GTCTC 3 cut(s) 1575, 2106, 2254
BfaI CTAG 2 cut(s) 119, 177
BfmI CTRYAG 1 cut(s) 1574
BisI GCNGC 8 cut(s) 123, 181, 881, 1031, 1887, 1890, 2118, 2214
BlsI GCNGC 8 cut(s) 124, 182, 882, 1032, 1888, 1891, 2119, 2215
Bme1390I CCNGG 2 cut(s) 591, 613
Bme18I GGWCC 5 cut(s) 365, 454, 575, 587, 833
BmgT120I GGNCC 7 cut(s) 365, 454, 575, 587, 609, 833, 1520
BmiI GGNNCC 3 cut(s) 734, 1533, 1608
BmrFI CCNGG 2 cut(s) 591, 613
BmsI GCATC 3 cut(s) 247, 925, 1189
BmtI GCTAGC 1 cut(s) 180
BoxI GACNNNNGTC 1 cut(s) 444
BpiI GAAGAC 3 cut(s) 79, 1086, 1158
BpmI CTGGAG 3 cut(s) 705, 2165, 2199
Bpu10I CCTNAGC 2 cut(s) 1034, 2163
BpuEI CTTGAG 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 1434
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 67, 612, 631, 1615
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 8 cut(s) 101, 584, 618, 659, 1528, 1616, 2021, 2239
Bse118I RCCGGY 2 cut(s) 101, 783
Bse1I ACTGG 5 cut(s) 333, 415, 905, 2148, 2182
Bse3DI GCAATG 3 cut(s) 323, 1065, 2064
Bse8I GATNNNNATC 1 cut(s) 1434
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 2 cut(s) 591, 613
BseDI CCNNGG 4 cut(s) 67, 612, 631, 1615
BseGI GGATG 5 cut(s) 757, 949, 1115, 1230, 1448
BseJI GATNNNNATC 1 cut(s) 1434
BseLI CCNNNNNNNGG 8 cut(s) 101, 584, 618, 659, 1528, 1616, 2021, 2239
BseMI GCAATG 3 cut(s) 323, 1065, 2064
BseMII CTCAG 3 cut(s) 1336, 1367, 2177
BseNI ACTGG 5 cut(s) 333, 415, 905, 2148, 2182
BseRI GAGGAG 1 cut(s) 2094
BseSI GKGCMC 1 cut(s) 2245
BseXI GCAGC 8 cut(s) 109, 192, 892, 1017, 1876, 1898, 2104, 2225
BseYI CCCAGC 1 cut(s) 1836
BsgI GTGCAG 2 cut(s) 517, 1444
Bsh1236I CGCG 2 cut(s) 599, 864
BshFI GGCC 8 cut(s) 332, 342, 349, 611, 1018, 1521, 1881, 2087
BsiHKAI GWGCWC 2 cut(s) 913, 1680
BsiSI CCGG 4 cut(s) 95, 102, 242, 784
BslI CCNNNNNNNGG 8 cut(s) 101, 584, 618, 659, 1528, 1616, 2021, 2239
BsmAI GTCTC 3 cut(s) 1575, 2106, 2254
BsmBI CGTCTC 2 cut(s) 2106, 2254
BsnI GGCC 8 cut(s) 332, 342, 349, 611, 1018, 1521, 1881, 2087
Bsp1286I GDGCHC 4 cut(s) 42, 913, 1680, 2245
Bsp13I TCCGGA 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 631
BspACI CCGC 1 cut(s) 2029
BspANI GGCC 8 cut(s) 332, 342, 349, 611, 1018, 1521, 1881, 2087
BspCNI CTCAG 3 cut(s) 1335, 1366, 2176
BspEI TCCGGA 1 cut(s) 94
BspFNI CGCG 2 cut(s) 599, 864
BspHI TCATGA 1 cut(s) 2187
BspLI GGNNCC 3 cut(s) 734, 1533, 1608
BspOI GCTAGC 1 cut(s) 180
BspPI GGATC 7 cut(s) 86, 727, 740, 1526, 1539, 1702, 2090
BspQI GCTCTTC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 2029
BsrDI GCAATG 3 cut(s) 323, 1065, 2064
BsrFI RCCGGY 2 cut(s) 101, 783
BsrI ACTGG 5 cut(s) 333, 415, 905, 2148, 2182
BssAI RCCGGY 2 cut(s) 101, 783
BssECI CCNNGG 4 cut(s) 67, 612, 631, 1615
BssNI GRCGYC 1 cut(s) 99
BssSI CACGAG 3 cut(s) 271, 1298, 1679
BssT1I CCWWGG 1 cut(s) 631
Bst2BI CACGAG 3 cut(s) 271, 1298, 1679
Bst2UI CCWGG 2 cut(s) 591, 613
Bst4CI ACNGT 9 cut(s) 109, 473, 944, 1002, 1397, 1542, 1569, 1859, 2114
Bst6I CTCTTC 4 cut(s) 30, 815, 1752, 2112
BstACI GRCGYC 1 cut(s) 99
BstDEI CTNAG 5 cut(s) 458, 1034, 1322, 1353, 2163
BstDSI CCRYGG 2 cut(s) 631, 1615
BstF5I GGATG 5 cut(s) 757, 949, 1115, 1230, 1448
BstFNI CGCG 2 cut(s) 599, 864
BstHHI GCGC 1 cut(s) 561
BstMAI GTCTC 3 cut(s) 1575, 2106, 2254
BstMWI GCNNNNNNNGC 7 cut(s) 290, 329, 359, 1277, 1286, 1712, 2084
BstNI CCWGG 2 cut(s) 591, 613
BstNSI RCATGY 5 cut(s) 559, 799, 1014, 1135, 1393
BstPAI GACNNNNGTC 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 589, 611
BstSFI CTRYAG 1 cut(s) 1574
BstSLI GKGCMC 1 cut(s) 2245
BstUI CGCG 2 cut(s) 599, 864
BstV1I GCAGC 8 cut(s) 109, 192, 892, 1017, 1876, 1898, 2104, 2225
BstV2I GAAGAC 3 cut(s) 79, 1086, 1158
BstX2I RGATCY 3 cut(s) 732, 1531, 2095
BstXI CCANNNNNNTGG 1 cut(s) 729
BstYI RGATCY 3 cut(s) 732, 1531, 2095
BsuRI GGCC 8 cut(s) 332, 342, 349, 611, 1018, 1521, 1881, 2087
BtgI CCRYGG 2 cut(s) 631, 1615
BtsCI GGATG 5 cut(s) 757, 949, 1115, 1230, 1448
BtsIMutI CAGTG 3 cut(s) 114, 340, 408
CaiI CAGNNNCTG 1 cut(s) 1892
CciI TCATGA 1 cut(s) 2187
CfoI GCGC 1 cut(s) 561
Cfr10I RCCGGY 2 cut(s) 101, 783
Cfr13I GGNCC 7 cut(s) 365, 454, 575, 587, 609, 833, 1520
CseI GACGC 1 cut(s) 107
Csp6I GTAC 8 cut(s) 54, 940, 1319, 1393, 1684, 1695, 1828, 1860
CviQI GTAC 8 cut(s) 54, 940, 1319, 1393, 1684, 1695, 1828, 1860
DdeI CTNAG 5 cut(s) 458, 1034, 1322, 1353, 2163
DraI TTTAAA 1 cut(s) 210
EaeI YGGCCR 2 cut(s) 340, 1016
Eam1104I CTCTTC 4 cut(s) 30, 815, 1752, 2112
EarI CTCTTC 4 cut(s) 30, 815, 1752, 2112
Ecl136II GAGCTC 1 cut(s) 911
Eco130I CCWWGG 1 cut(s) 631
Eco147I AGGCCT 1 cut(s) 1881
Eco24I GRGCYC 2 cut(s) 42, 913
Eco47I GGWCC 5 cut(s) 365, 454, 575, 587, 833
Eco53kI GAGCTC 1 cut(s) 911
Eco57I CTGAAG 1 cut(s) 1671
EcoICRI GAGCTC 1 cut(s) 911
EcoO109I RGGNCCY 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 1164
EcoRII CCWGG 2 cut(s) 589, 611
EcoT14I CCWWGG 1 cut(s) 631
EcoT22I ATGCAT 1 cut(s) 1133
EcoT38I GRGCYC 2 cut(s) 42, 913
ErhI CCWWGG 1 cut(s) 631
Esp3I CGTCTC 2 cut(s) 2106, 2254
FalI AAGNNNNNCTT 2 cut(s) 2183, 2215
FauNDI CATATG 1 cut(s) 191
Fnu4HI GCNGC 8 cut(s) 123, 181, 881, 1031, 1887, 1890, 2118, 2214
FokI GGATG 5 cut(s) 744, 936, 1122, 1237, 1455
FriOI GRGCYC 2 cut(s) 42, 913
Fsp4HI GCNGC 8 cut(s) 123, 181, 881, 1031, 1887, 1890, 2118, 2214
FspAI RTGCGCAY 1 cut(s) 560
FspBI CTAG 2 cut(s) 119, 177
FspI TGCGCA 1 cut(s) 560
GlaI GCGC 1 cut(s) 560
GluI GCNGC 8 cut(s) 123, 181, 881, 1031, 1887, 1890, 2118, 2214
GsaI CCCAGC 1 cut(s) 1840
GsuI CTGGAG 3 cut(s) 705, 2165, 2199
HaeIII GGCC 8 cut(s) 332, 342, 349, 611, 1018, 1521, 1881, 2087
HapII CCGG 4 cut(s) 95, 102, 242, 784
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 561
Hin1I GRCGYC 1 cut(s) 99
Hin6I GCGC 1 cut(s) 559
HinP1I GCGC 1 cut(s) 559
HindIII AAGCTT 2 cut(s) 1449, 1713
HinfI GANTC 5 cut(s) 622, 825, 1259, 1720, 1744
HpaII CCGG 4 cut(s) 95, 102, 242, 784
HphI GGTGA 5 cut(s) 467, 985, 1388, 1988, 2102
Hpy166II GTNNAC 6 cut(s) 793, 1303, 1419, 1619, 1695, 2069
Hpy188I TCNGA 6 cut(s) 71, 144, 1198, 1429, 1456, 1743
Hpy8I GTNNAC 6 cut(s) 793, 1303, 1419, 1619, 1695, 2069
Hpy99I CGWCG 3 cut(s) 131, 144, 450
HpyCH4III ACNGT 9 cut(s) 109, 473, 944, 1002, 1397, 1542, 1569, 1859, 2114
HpyCH4IV ACGT 1 cut(s) 405
HpyF10VI GCNNNNNNNGC 7 cut(s) 290, 329, 359, 1277, 1286, 1712, 2084
HpyF3I CTNAG 5 cut(s) 458, 1034, 1322, 1353, 2163
HpySE526I ACGT 1 cut(s) 405
Hsp92I GRCGYC 1 cut(s) 99
HspAI GCGC 1 cut(s) 559
Kpn2I TCCGGA 1 cut(s) 94
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 1606, 2180
Lsp1109I GCAGC 8 cut(s) 109, 192, 892, 1017, 1876, 1898, 2104, 2225
LweI GCATC 3 cut(s) 247, 925, 1189
MaeI CTAG 2 cut(s) 119, 177
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 8 cut(s) 406, 473, 776, 1376, 1397, 1555, 1594, 2202
MbiI CCGCTC 1 cut(s) 2029
MflI RGATCY 3 cut(s) 732, 1531, 2095
MhlI GDGCHC 4 cut(s) 42, 913, 1680, 2245
MlsI TGGCCA 2 cut(s) 342, 1018
MluCI AATT 9 cut(s) 146, 221, 310, 870, 957, 1164, 1250, 1348, 1634
MluI ACGCGT 1 cut(s) 597
MluNI TGGCCA 2 cut(s) 342, 1018
MmeI TCCRAC 3 cut(s) 122, 1479, 1611
Mox20I TGGCCA 2 cut(s) 342, 1018
Mph1103I ATGCAT 1 cut(s) 1133
MroI TCCGGA 1 cut(s) 94
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 3 cut(s) 221, 824, 1002
MscI TGGCCA 2 cut(s) 342, 1018
MseI TTAA 6 cut(s) 171, 209, 296, 309, 1023, 2129
MslI CAYNNNNRTG 7 cut(s) 420, 480, 554, 636, 800, 921, 1808
Msp20I TGGCCA 2 cut(s) 342, 1018
MspA1I CMGCKG 1 cut(s) 1889
MspI CCGG 4 cut(s) 95, 102, 242, 784
MspR9I CCNGG 2 cut(s) 591, 613
MvaI CCWGG 2 cut(s) 591, 613
MvnI CGCG 2 cut(s) 599, 864
MwoI GCNNNNNNNGC 7 cut(s) 290, 329, 359, 1277, 1286, 1712, 2084
NaeI GCCGGC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 631
NdeI CATATG 1 cut(s) 191
NgoMIV GCCGGC 1 cut(s) 101
NheI GCTAGC 1 cut(s) 176
NlaIV GGNNCC 3 cut(s) 734, 1533, 1608
NmeAIII GCCGAG 1 cut(s) 2113
NmuCI GTSAC 4 cut(s) 406, 473, 1376, 1397
NsbI TGCGCA 1 cut(s) 560
NsiI ATGCAT 1 cut(s) 1133
NspI RCATGY 5 cut(s) 559, 799, 1014, 1135, 1393
PaeI GCATGC 2 cut(s) 559, 1135
PagI TCATGA 1 cut(s) 2187
PceI AGGCCT 1 cut(s) 1881
PciI ACATGT 1 cut(s) 1389
PciSI GCTCTTC 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 3 cut(s) 221, 824, 1002
PfeI GAWTC 5 cut(s) 622, 825, 1259, 1720, 1744
PflMI CCANNNNNTGG 1 cut(s) 618
PkrI GCNGC 8 cut(s) 124, 182, 882, 1032, 1888, 1891, 2119, 2215
PpuMI RGGWCCY 1 cut(s) 454
PscI ACATGT 1 cut(s) 1389
PshAI GACNNNNGTC 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 913
Psp5II RGGWCCY 1 cut(s) 454
Psp6I CCWGG 2 cut(s) 589, 611
PspFI CCCAGC 1 cut(s) 1836
PspGI CCWGG 2 cut(s) 589, 611
PspN4I GGNNCC 3 cut(s) 734, 1533, 1608
PspPI GGNCC 7 cut(s) 365, 454, 575, 587, 609, 833, 1520
PspPPI RGGWCCY 1 cut(s) 454
PsrI GAACNNNNNNTAC 2 cut(s) 968, 1000
PstNI CAGNNNCTG 1 cut(s) 1892
PsuI RGATCY 3 cut(s) 732, 1531, 2095
PvuII CAGCTG 1 cut(s) 1889
RsaI GTAC 8 cut(s) 55, 941, 1320, 1394, 1685, 1696, 1829, 1861
RsaNI GTAC 8 cut(s) 54, 940, 1319, 1393, 1684, 1695, 1828, 1860
RseI CAYNNNNRTG 7 cut(s) 420, 480, 554, 636, 800, 921, 1808
SacI GAGCTC 1 cut(s) 913
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 6 cut(s) 171, 209, 296, 309, 1023, 2129
SatI GCNGC 8 cut(s) 123, 181, 881, 1031, 1887, 1890, 2118, 2214
Sau96I GGNCC 7 cut(s) 365, 454, 575, 587, 609, 833, 1520
ScrFI CCNGG 2 cut(s) 591, 613
SduI GDGCHC 4 cut(s) 42, 913, 1680, 2245
SfaNI GCATC 3 cut(s) 247, 925, 1189
SfcI CTRYAG 1 cut(s) 1574
SinI GGWCC 5 cut(s) 365, 454, 575, 587, 833
SmiMI CAYNNNNRTG 7 cut(s) 420, 480, 554, 636, 800, 921, 1808
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
SphI GCATGC 2 cut(s) 559, 1135
Sse9I AATT 9 cut(s) 146, 221, 310, 870, 957, 1164, 1250, 1348, 1634
SseBI AGGCCT 1 cut(s) 1881
SsiI CCGC 1 cut(s) 2029
SspMI CTAG 2 cut(s) 119, 177
SstI GAGCTC 1 cut(s) 913
StuI AGGCCT 1 cut(s) 1881
StyD4I CCNGG 2 cut(s) 589, 611
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 9 cut(s) 109, 473, 944, 1002, 1397, 1542, 1569, 1859, 2114
TaiI ACGT 1 cut(s) 408
TaqI TCGA 5 cut(s) 129, 225, 448, 677, 1432
TasI AATT 9 cut(s) 146, 221, 310, 870, 957, 1164, 1250, 1348, 1634
TatI WGTACW 4 cut(s) 1318, 1683, 1694, 1859
TfiI GAWTC 5 cut(s) 622, 825, 1259, 1720, 1744
Tru1I TTAA 6 cut(s) 171, 209, 296, 309, 1023, 2129
Tru9I TTAA 6 cut(s) 171, 209, 296, 309, 1023, 2129
TscAI CASTG 3 cut(s) 114, 340, 415
TseFI GTSAC 4 cut(s) 406, 473, 1376, 1397
TseI GCWGC 8 cut(s) 122, 180, 880, 1030, 1886, 1889, 2117, 2213
Tsp45I GTSAC 4 cut(s) 406, 473, 1376, 1397
TspGWI ACGGA 3 cut(s) 1176, 1845, 2088
TspRI CASTG 3 cut(s) 114, 340, 415
Van91I CCANNNNNTGG 1 cut(s) 618
VpaK11BI GGWCC 5 cut(s) 365, 454, 575, 587, 833
XapI RAATTY 6 cut(s) 146, 221, 870, 957, 1164, 1348
XceI RCATGY 5 cut(s) 559, 799, 1014, 1135, 1393
XcmI CCANNNNNNNNNTGG 2 cut(s) 485, 768
XmnI GAANNNNTTC 3 cut(s) 221, 824, 1002
XspI CTAG 2 cut(s) 119, 177
Zsp2I ATGCAT 1 cut(s) 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.