Rroxscaffold_3G00225830

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000173
Physical Location & Seq
Forward (+)
9164041 .. 9169221
5181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225830.1

Sequence Viewer

Length: 1401 bp
ATGGGGATGATCAAGAAGAGGAGGAAATCACGAAAATGGGAAGGATCGGCCCATGCAACGCCGCGTCAAGGTTTTCCGGCGGGTCGGGTTTCGCACGTCCGGGGCCGCCGATCCGGCTTTCTAGGCGGCGGCGGGCAAGGCGACACCACCGGCCGCTCGGGTGGCTCGGTCCGCGGCGGAGGTGGCCGGTCCGCGGCGGAGGTGGCCGGAGATGGGAGATGGGTCCGGTTCCTATGGGAGAAGAAGTTCAAACAGACAATTCCTCCAGCAAAAATTGAAGATGGCGAGGTCATGTGTATGTACATTACTGGGCATCTTAACAGTGTATTCCCTGAAAAGCATCGCAAAGAAATTCTGCGTTACATATTCTATCAACAGAATGAAGAGGGTGGTTGGGGACTACACGTCGAAGGTCACAGCTCCATGTTCAGCATAGCTCTCAGCTACATTTGTATGCGTATTCTCGGAGTAGGACCTGATGATGGTGGCCGAGACAATGCTTGTCCAAGAGCAAGAAAGTGGATTCTTGATCATGGTGGTGTGACACACATACCCTATTGGGGAAAGACTTGGCTTTCGATAGTTGGTTTGTTTGATTGGTCTGGATGCAACCCTATGCCCCCAGAGTTTTGGATACTTCCTTCGTTTCTTCCTATGCATCCAGTACGCCATCTGTTCGCCAAAGAGGACATCTACTATCCTCATCCTTGGATACAGGATCTCCTTTGGGATAGCCTCTACATTTCCACTGAGCCTATTCTTACTCGTTGGCCCTTCAACAAGTTGATCAGAGAAAAGGCTCTTCAAGTGACGATGAAGCATATTCATTACGAAGATGAGAACAGTCGATACATTACCATTGGGTGTATGGAAAAGGTGTTATGTATGCTTGCCTATTGGGTTAAAGATCCAAATGGGGACTATTTCAAGAAGCATCTAGCAAGGGTCCCGGATTATTTATGGGTTGCTGAAGATGGAATGAAGATGCAAAGTTTTGGCAGTCAGGAGTGGGATACTGGTTTTGCCATTCAAGCTTTGCTTGCTACTAATCTAACGGACGAAATTGGACCAACGCTCGCTAGAGGACATGACTTCATCAAGAAATCTCAGGTCAAAGACAACCCATCTGGTGACTTCAAAAGCAAGCACCGCCACATTTCCAAAGGATCGTGGACTTTCTCCGATCAAGATCATGGATGGCAAGTTTTTGATTGCACTGCAGAAGGTTTAAAGTGTTGCCTTCTATTGTCGATGATGCCATTGGAGATAGTTGGTGAAAAAATGGAACCTGAGCGCTTATACGATTCTGTCAATGTTCTACTTTCCCTACAGAGCAAGAATGGTGGTTTATCAGCCTGGGAACCAGCAGGGGCAGCAGAGTGGTTAGAAGTAAGAACTTAA

Protein Analysis

466

Amino Acids

52.92

Weight (kDa)

8.58

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 112 - 221 3.3e-23 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 336 - 455 2.4e-10 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 156
AccII CGCG 3 cut(s) 64, 174, 194
AclWI GGATC 5 cut(s) 52, 105, 726, 902, 1174
AcoI YGGCCR 4 cut(s) 151, 184, 204, 487
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 990
AfaI GTAC 2 cut(s) 302, 666
AfeI AGCGCT 1 cut(s) 1295
AfiI CCNNNNNNNGG 5 cut(s) 68, 193, 213, 482, 560
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 7 cut(s) 250, 278, 778, 806, 928, 1031, 1138
AhdI GACNNNNNGTC 1 cut(s) 404
AjiI CACGTC 2 cut(s) 97, 406
AjnI CCWGG 1 cut(s) 1355
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 4 cut(s) 420, 437, 444, 1034
AluI AGCT 4 cut(s) 420, 437, 444, 1034
Alw26I GTCTC 1 cut(s) 486
AlwI GGATC 5 cut(s) 52, 105, 726, 902, 1174
Ama87I CYCGRG 1 cut(s) 157
Aor51HI AGCGCT 1 cut(s) 1295
AoxI GGCC 7 cut(s) 48, 103, 151, 184, 204, 487, 770
ApeKI GCWGC 1 cut(s) 1373
ApoI RAATTY 1 cut(s) 351
ArsI GACNNNNNNTTYG 2 cut(s) 559, 591
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 1296
AspS9I GGNCC 9 cut(s) 49, 103, 169, 189, 223, 473, 771, 946, 1067
AsuC2I CCSGG 2 cut(s) 101, 950
AsuHPI GGTGA 2 cut(s) 1142, 1286
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 6 cut(s) 169, 189, 223, 473, 946, 1067
BbvI GCAGC 1 cut(s) 1385
BccI CCATC 8 cut(s) 206, 213, 275, 476, 678, 968, 1132, 1191
BciT130I CCWGG 1 cut(s) 1357
BciVI GTATCC 3 cut(s) 627, 705, 1006
BclI TGATCA 3 cut(s) 9, 529, 786
BcnI CCSGG 2 cut(s) 101, 950
BcoDI GTCTC 1 cut(s) 486
BfaI CTAG 3 cut(s) 122, 938, 1080
BfmI CTRYAG 2 cut(s) 1218, 1328
BfoI RGCGCY 1 cut(s) 1297
BfuI GTATCC 3 cut(s) 627, 705, 1006
BglI GCCNNNNNGGC 1 cut(s) 114
BisI GCNGC 8 cut(s) 62, 106, 127, 130, 154, 175, 195, 1374
BlsI GCNGC 8 cut(s) 63, 107, 128, 131, 155, 176, 196, 1375
Bme1390I CCNGG 3 cut(s) 101, 950, 1357
Bme18I GGWCC 6 cut(s) 169, 189, 223, 473, 946, 1067
BmeRI GACNNNNNGTC 1 cut(s) 404
BmeT110I CYCGRG 1 cut(s) 157
BmgBI CACGTC 2 cut(s) 97, 406
BmgT120I GGNCC 9 cut(s) 49, 103, 169, 189, 223, 473, 771, 946, 1067
BmiI GGNNCC 7 cut(s) 104, 224, 230, 947, 948, 1287, 1362
BmrFI CCNGG 3 cut(s) 101, 950, 1357
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 7 cut(s) 322, 349, 596, 667, 943, 975, 1245
BmuI ACTGGG 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 1290
BpuMI CCSGG 2 cut(s) 101, 950
BsaBI GATNNNNATC 1 cut(s) 1188
BsaJI CCNNGG 5 cut(s) 100, 172, 192, 707, 1356
BsaWI WCCGGW 1 cut(s) 225
BsaXI ACNNNNNCTCC 6 cut(s) 230, 247, 260, 277, 705, 735
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 193, 213, 482, 560
Bse118I RCCGGY 2 cut(s) 149, 186
Bse1I ACTGG 3 cut(s) 313, 662, 1021
Bse8I GATNNNNATC 1 cut(s) 1188
BseBI CCWGG 1 cut(s) 1357
BseDI CCNNGG 5 cut(s) 100, 172, 192, 707, 1356
BseGI GGATG 5 cut(s) 12, 611, 658, 703, 1202
BseJI GATNNNNATC 1 cut(s) 1188
BseLI CCNNNNNNNGG 5 cut(s) 68, 193, 213, 482, 560
BseMII CTCAG 4 cut(s) 454, 741, 1121, 1281
BseNI ACTGG 3 cut(s) 313, 662, 1021
BseRI GAGGAG 1 cut(s) 34
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 1385
Bsh1236I CGCG 3 cut(s) 64, 174, 194
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 7 cut(s) 50, 105, 153, 186, 206, 489, 772
BsiEI CGRYCG 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 8 cut(s) 77, 100, 114, 150, 187, 207, 226, 950
BslFI GGGAC 3 cut(s) 411, 932, 932
BslI CCNNNNNNNGG 5 cut(s) 68, 193, 213, 482, 560
BsmAI GTCTC 1 cut(s) 486
BsmFI GGGAC 3 cut(s) 411, 932, 932
BsnI GGCC 7 cut(s) 50, 105, 153, 186, 206, 489, 772
BsoBI CYCGRG 1 cut(s) 157
Bsp1407I TGTACA 1 cut(s) 300
BspANI GGCC 7 cut(s) 50, 105, 153, 186, 206, 489, 772
BspCNI CTCAG 4 cut(s) 453, 742, 1120, 1282
BspFNI CGCG 3 cut(s) 64, 174, 194
BspLI GGNNCC 7 cut(s) 104, 224, 230, 947, 948, 1287, 1362
BspMAI CTGCAG 1 cut(s) 1222
BspPI GGATC 5 cut(s) 52, 105, 726, 902, 1174
BspQI GCTCTTC 1 cut(s) 807
BsrBI CCGCTC 1 cut(s) 156
BsrFI RCCGGY 2 cut(s) 149, 186
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 3 cut(s) 313, 662, 1021
BssAI RCCGGY 2 cut(s) 149, 186
BssECI CCNNGG 5 cut(s) 100, 172, 192, 707, 1356
BssT1I CCWWGG 1 cut(s) 707
Bst2UI CCWGG 1 cut(s) 1357
Bst4CI ACNGT 2 cut(s) 323, 845
Bst6I CTCTTC 3 cut(s) 11, 378, 807
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 5 cut(s) 134, 891, 1041, 1077, 1145
BstDEI CTNAG 4 cut(s) 440, 750, 1107, 1290
BstDSI CCRYGG 2 cut(s) 172, 192
BstF5I GGATG 5 cut(s) 12, 611, 658, 703, 1202
BstFNI CGCG 3 cut(s) 64, 174, 194
BstH2I RGCGCY 1 cut(s) 1297
BstHHI GCGC 1 cut(s) 1296
BstMAI GTCTC 1 cut(s) 486
BstMCI CGRYCG 1 cut(s) 154
BstNI CCWGG 1 cut(s) 1357
BstSCI CCNGG 3 cut(s) 99, 948, 1355
BstSFI CTRYAG 2 cut(s) 1218, 1328
BstUI CGCG 3 cut(s) 64, 174, 194
BstV1I GCAGC 1 cut(s) 1385
BstX2I RGATCY 2 cut(s) 718, 907
BstXI CCANNNNNNTGG 1 cut(s) 630
BstYI RGATCY 2 cut(s) 718, 907
BstZI CGGCCG 1 cut(s) 151
BsuI GTATCC 3 cut(s) 627, 705, 1006
BsuRI GGCC 7 cut(s) 50, 105, 153, 186, 206, 489, 772
BtgI CCRYGG 2 cut(s) 172, 192
BtgZI GCGATG 1 cut(s) 326
BtrI CACGTC 2 cut(s) 97, 406
BtsCI GGATG 5 cut(s) 12, 611, 658, 703, 1202
BtsI GCAGTG 1 cut(s) 1215
BtsIMutI CAGTG 3 cut(s) 328, 747, 1215
Cac8I GCNNGC 5 cut(s) 134, 891, 1041, 1077, 1145
CfoI GCGC 1 cut(s) 1296
Cfr10I RCCGGY 2 cut(s) 149, 186
Cfr13I GGNCC 9 cut(s) 49, 103, 169, 189, 223, 473, 771, 946, 1067
Cfr42I CCGCGG 2 cut(s) 175, 195
CpoI CGGWCCG 2 cut(s) 169, 189
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 301, 665
CspCI CAANNNNNGTGG 2 cut(s) 1324, 1359
CspI CGGWCCG 2 cut(s) 169, 189
CviAII CATG 6 cut(s) 53, 292, 424, 533, 1088, 1193
CviQI GTAC 2 cut(s) 301, 665
DdeI CTNAG 4 cut(s) 440, 750, 1107, 1290
DraI TTTAAA 1 cut(s) 1230
DriI GACNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 4 cut(s) 151, 184, 204, 487
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 3 cut(s) 11, 378, 807
Eam1105I GACNNNNNGTC 1 cut(s) 404
EarI CTCTTC 3 cut(s) 11, 378, 807
EciI GGCGGA 2 cut(s) 192, 212
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 707
Eco47I GGWCC 6 cut(s) 169, 189, 223, 473, 946, 1067
Eco47III AGCGCT 1 cut(s) 1295
Eco52I CGGCCG 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 157
EcoO109I RGGNCCY 2 cut(s) 473, 946
EcoRII CCWGG 1 cut(s) 1355
EcoT14I CCWWGG 1 cut(s) 707
EcoT22I ATGCAT 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 707
FaeI CATG 6 cut(s) 56, 295, 427, 536, 1091, 1196
FalI AAGNNNNNCTT 2 cut(s) 1023, 1055
FaqI GGGAC 3 cut(s) 411, 932, 932
FatI CATG 6 cut(s) 52, 291, 423, 532, 1087, 1192
FauI CCCGC 2 cut(s) 73, 125
FbaI TGATCA 3 cut(s) 9, 529, 786
Fnu4HI GCNGC 8 cut(s) 62, 106, 127, 130, 154, 175, 195, 1374
FokI GGATG 5 cut(s) 19, 618, 645, 690, 1209
Fsp4HI GCNGC 8 cut(s) 62, 106, 127, 130, 154, 175, 195, 1374
FspBI CTAG 3 cut(s) 122, 938, 1080
GlaI GCGC 1 cut(s) 1295
GluI GCNGC 8 cut(s) 62, 106, 127, 130, 154, 175, 195, 1374
GsuI CTGGAG 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 1297
HaeIII GGCC 7 cut(s) 50, 105, 153, 186, 206, 489, 772
HapII CCGG 8 cut(s) 77, 100, 114, 150, 187, 207, 226, 950
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 1296
Hin1II CATG 6 cut(s) 56, 295, 427, 536, 1091, 1196
Hin6I GCGC 1 cut(s) 1294
HinP1I GCGC 1 cut(s) 1294
HindIII AAGCTT 1 cut(s) 1032
HinfI GANTC 2 cut(s) 523, 1304
HpaII CCGG 8 cut(s) 77, 100, 114, 150, 187, 207, 226, 950
HphI GGTGA 2 cut(s) 1142, 1286
Hpy166II GTNNAC 1 cut(s) 1173
Hpy188I TCNGA 3 cut(s) 467, 791, 1183
Hpy188III TCNNGA 8 cut(s) 13, 30, 527, 603, 928, 1004, 1099, 1187
Hpy8I GTNNAC 1 cut(s) 1173
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 6 cut(s) 35, 404, 651, 784, 1217, 1250
HpyCH4III ACNGT 2 cut(s) 323, 845
HpyCH4IV ACGT 2 cut(s) 96, 405
HpyCH4V TGCA 6 cut(s) 56, 609, 658, 988, 1215, 1220
HpyF3I CTNAG 4 cut(s) 440, 750, 1107, 1290
HpySE526I ACGT 2 cut(s) 96, 405
Hsp92II CATG 6 cut(s) 56, 295, 427, 536, 1091, 1196
HspAI GCGC 1 cut(s) 1294
KflI GGGWCCC 1 cut(s) 946
Ksp22I TGATCA 3 cut(s) 9, 529, 786
KspI CCGCGG 2 cut(s) 175, 195
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 1 cut(s) 1385
LweI GCATC 7 cut(s) 322, 349, 596, 667, 943, 975, 1245
MaeI CTAG 3 cut(s) 122, 938, 1080
MaeII ACGT 2 cut(s) 96, 405
MaeIII GTNAC 5 cut(s) 359, 413, 541, 808, 1130
MbiI CCGCTC 1 cut(s) 156
MboII GAAGA 9 cut(s) 28, 253, 290, 395, 641, 794, 845, 983, 994
MflI RGATCY 2 cut(s) 718, 907
MluCI AATT 4 cut(s) 258, 273, 351, 1062
Mph1103I ATGCAT 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 4 cut(s) 318, 903, 1229, 1399
MslI CAYNNNNRTG 4 cut(s) 34, 296, 452, 537
MspA1I CMGCKG 2 cut(s) 174, 194
MspI CCGG 8 cut(s) 77, 100, 114, 150, 187, 207, 226, 950
MspR9I CCNGG 3 cut(s) 101, 950, 1357
MvaI CCWGG 1 cut(s) 1357
MvnI CGCG 3 cut(s) 64, 174, 194
NciI CCSGG 2 cut(s) 101, 950
NlaIII CATG 6 cut(s) 56, 295, 427, 536, 1091, 1196
NlaIV GGNNCC 7 cut(s) 104, 224, 230, 947, 948, 1287, 1362
NmeAIII GCCGAG 1 cut(s) 515
NmuCI GTSAC 4 cut(s) 413, 541, 808, 1130
NsiI ATGCAT 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 807
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 523, 1304
PfoI TCCNGGA 1 cut(s) 948
PkrI GCNGC 8 cut(s) 63, 107, 128, 131, 155, 176, 196, 1375
PpuMI RGGWCCY 2 cut(s) 473, 946
Psp5II RGGWCCY 2 cut(s) 473, 946
Psp6I CCWGG 1 cut(s) 1355
PspGI CCWGG 1 cut(s) 1355
PspN4I GGNNCC 7 cut(s) 104, 224, 230, 947, 948, 1287, 1362
PspPI GGNCC 9 cut(s) 49, 103, 169, 189, 223, 473, 771, 946, 1067
PspPPI RGGWCCY 2 cut(s) 473, 946
PsrI GAACNNNNNNTAC 2 cut(s) 833, 865
PstI CTGCAG 1 cut(s) 1222
PsuI RGATCY 2 cut(s) 718, 907
RsaI GTAC 2 cut(s) 302, 666
RsaNI GTAC 2 cut(s) 301, 665
RseI CAYNNNNRTG 4 cut(s) 34, 296, 452, 537
Rsr2I CGGWCCG 2 cut(s) 169, 189
RsrII CGGWCCG 2 cut(s) 169, 189
SacII CCGCGG 2 cut(s) 175, 195
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 4 cut(s) 318, 903, 1229, 1399
SatI GCNGC 8 cut(s) 62, 106, 127, 130, 154, 175, 195, 1374
Sau96I GGNCC 9 cut(s) 49, 103, 169, 189, 223, 473, 771, 946, 1067
ScrFI CCNGG 3 cut(s) 101, 950, 1357
SfaNI GCATC 7 cut(s) 322, 349, 596, 667, 943, 975, 1245
SfcI CTRYAG 2 cut(s) 1218, 1328
Sfr303I CCGCGG 2 cut(s) 175, 195
SgrBI CCGCGG 2 cut(s) 175, 195
SinI GGWCC 6 cut(s) 169, 189, 223, 473, 946, 1067
SmiMI CAYNNNNRTG 4 cut(s) 34, 296, 452, 537
Sse9I AATT 4 cut(s) 258, 273, 351, 1062
SspMI CTAG 3 cut(s) 122, 938, 1080
StyD4I CCNGG 3 cut(s) 99, 948, 1355
StyI CCWWGG 1 cut(s) 707
TaaI ACNGT 2 cut(s) 323, 845
TaiI ACGT 2 cut(s) 99, 408
TaqI TCGA 4 cut(s) 408, 578, 847, 1250
TaqII GACCGA 1 cut(s) 157
TasI AATT 4 cut(s) 258, 273, 351, 1062
TatI WGTACW 1 cut(s) 300
TauI GCSGC 7 cut(s) 64, 108, 129, 132, 156, 177, 197
TfiI GAWTC 2 cut(s) 523, 1304
Tru1I TTAA 4 cut(s) 318, 903, 1229, 1399
Tru9I TTAA 4 cut(s) 318, 903, 1229, 1399
TscAI CASTG 3 cut(s) 328, 754, 1222
TseFI GTSAC 4 cut(s) 413, 541, 808, 1130
TseI GCWGC 1 cut(s) 1373
Tsp45I GTSAC 4 cut(s) 413, 541, 808, 1130
TspDTI ATGAA 5 cut(s) 396, 815, 830, 995, 1084
TspGWI ACGGA 1 cut(s) 1070
TspRI CASTG 3 cut(s) 328, 754, 1222
VpaK11BI GGWCC 6 cut(s) 169, 189, 223, 473, 946, 1067
XapI RAATTY 1 cut(s) 351
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 3 cut(s) 122, 938, 1080
Zsp2I ATGCAT 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.