Rh2AG380200

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
56998557 .. 57001469
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG380200.1

Sequence Viewer

Length: 555 bp
ATGTGGAAGCTTAGGTTTGGAAACGAAGGTGCAAATAATGACCCTTACAGTCCTTACTTGTTTAGCACAAACAACTTTTATGGGAGGCAAACATGGGAGTTTGACTCGGCTGCCGGCACGCCTGAAGAGCGAGCAGAGGTCGAAGAAGTTCGACTAAGTTTTTACAACAATCGTCACCAGGTCCAGGCTTGTAGTGACCTCCTCTGCCGAATGCAGCTTCTGGGAGAGAAAAAGTTCAAACAAAAGATTCCCCAATTAAAGGTGGAGGATGGTGAGGACTGTACATATGAAAAGGCCACCGCTGCATTCACAAGGGCAGCTACCTTCTACTCTGCCTTGCAATCACCTCACGGCCATTGGCCTGCTGAACAAGCCGGTCTCATGTTTTATATTCCTTCCTTGGTCATACCGCTCTATATTATGGGGCATCTTAGTAAGGTGTTCTCTGCAGAGCATTATAAGGAAATGCTTAGATATATATACTGTCATCAGGTAAAGTACAAGACAAGCTATGGTACTTGTGGGTATCTCATACACCCATTTACAACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

184

Amino Acids

21.36

Weight (kDa)

7.04

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AccBSI CCGCTC 1 cut(s) 412
AciI CCGC 2 cut(s) 300, 410
AcoI YGGCCR 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 3 cut(s) 283, 500, 517
AfiI CCNNNNNNNGG 2 cut(s) 184, 259
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 2 cut(s) 177, 183
AluBI AGCT 4 cut(s) 10, 217, 320, 510
AluI AGCT 4 cut(s) 10, 217, 320, 510
Alw26I GTCTC 1 cut(s) 383
AlwNI CAGNNNCTG 1 cut(s) 220
AoxI GGCC 3 cut(s) 294, 352, 359
ApeKI GCWGC 4 cut(s) 110, 214, 302, 317
Asp700I GAANNNNTTC 2 cut(s) 147, 233
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 3 cut(s) 167, 284, 336
AvaII GGWCC 1 cut(s) 181
BbvI GCAGC 4 cut(s) 97, 226, 289, 329
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 2 cut(s) 179, 185
BcoDI GTCTC 1 cut(s) 383
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 4 cut(s) 111, 215, 303, 318
BlsI GCNGC 4 cut(s) 112, 216, 304, 319
Bme1390I CCNGG 2 cut(s) 179, 185
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 179, 185
BmsI GCATC 1 cut(s) 436
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu10I CCTNAGC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 399
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 259
Bse118I RCCGGY 2 cut(s) 113, 374
BseBI CCWGG 2 cut(s) 179, 185
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 184, 259
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 4 cut(s) 97, 226, 289, 329
BshFI GGCC 3 cut(s) 296, 354, 361
BsiSI CCGG 2 cut(s) 114, 375
BslI CCNNNNNNNGG 2 cut(s) 184, 259
BsmAI GTCTC 1 cut(s) 383
BsmI GAATGC 2 cut(s) 216, 305
BsnI GGCC 3 cut(s) 296, 354, 361
Bso31I GGTCTC 1 cut(s) 383
Bsp1407I TGTACA 1 cut(s) 281
BspACI CCGC 2 cut(s) 300, 410
BspANI GGCC 3 cut(s) 296, 354, 361
BspMAI CTGCAG 1 cut(s) 451
BspQI GCTCTTC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 412
BsrFI RCCGGY 2 cut(s) 113, 374
BsrGI TGTACA 1 cut(s) 281
BssAI RCCGGY 2 cut(s) 113, 374
BssECI CCNNGG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 179, 185
Bst4CI ACNGT 3 cut(s) 50, 281, 485
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 281
BstC8I GCNNGC 4 cut(s) 115, 119, 132, 363
BstDEI CTNAG 4 cut(s) 11, 155, 431, 470
BstF5I GGATG 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 383
BstMWI GCNNNNNNNGC 3 cut(s) 127, 302, 371
BstNI CCWGG 2 cut(s) 179, 185
BstSCI CCNGG 2 cut(s) 177, 183
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 4 cut(s) 97, 226, 289, 329
BsuRI GGCC 3 cut(s) 296, 354, 361
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 4 cut(s) 115, 119, 132, 363
CaiI CAGNNNCTG 1 cut(s) 220
Cfr10I RCCGGY 2 cut(s) 113, 374
Cfr13I GGNCC 1 cut(s) 181
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 3 cut(s) 282, 499, 516
CviAII CATG 2 cut(s) 93, 382
CviQI GTAC 3 cut(s) 282, 499, 516
DdeI CTNAG 4 cut(s) 11, 155, 431, 470
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 177, 183
EcoT14I CCWWGG 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 399
FaeI CATG 2 cut(s) 96, 385
FatI CATG 2 cut(s) 92, 381
FauNDI CATATG 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 111, 215, 303, 318
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 4 cut(s) 111, 215, 303, 318
GluI GCNGC 4 cut(s) 111, 215, 303, 318
HaeIII GGCC 3 cut(s) 296, 354, 361
HapII CCGG 2 cut(s) 114, 375
Hin1II CATG 2 cut(s) 96, 385
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 104, 247
HpaII CCGG 2 cut(s) 114, 375
HphI GGTGA 3 cut(s) 167, 284, 336
HpyAV CCTTC 3 cut(s) 20, 334, 405
HpyCH4III ACNGT 3 cut(s) 50, 281, 485
HpyCH4V TGCA 5 cut(s) 32, 214, 305, 340, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 302, 371
HpyF3I CTNAG 4 cut(s) 11, 155, 431, 470
Hsp92II CATG 2 cut(s) 96, 385
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
LguI GCTCTTC 1 cut(s) 120
Lsp1109I GCAGC 4 cut(s) 97, 226, 289, 329
LweI GCATC 1 cut(s) 436
MabI ACCWGGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 173, 194
MbiI CCGCTC 1 cut(s) 412
MboII GAAGA 2 cut(s) 137, 155
MluCI AATT 1 cut(s) 254
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 7 cut(s) 78, 130, 209, 212, 259, 268, 357
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 2 cut(s) 147, 233
MseI TTAA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 2 cut(s) 114, 375
MspR9I CCNGG 2 cut(s) 179, 185
Mva1269I GAATGC 2 cut(s) 216, 305
MvaI CCWGG 2 cut(s) 179, 185
MwoI GCNNNNNNNGC 3 cut(s) 127, 302, 371
NaeI GCCGGC 1 cut(s) 115
NdeI CATATG 1 cut(s) 286
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 96, 385
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 173, 194
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 2 cut(s) 216, 305
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 2 cut(s) 147, 233
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 4 cut(s) 112, 216, 304, 319
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PsiI TTATAA 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 177, 183
PspGI CCWGG 2 cut(s) 177, 183
PspPI GGNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 220
RsaI GTAC 3 cut(s) 283, 500, 517
RsaNI GTAC 3 cut(s) 282, 499, 516
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 257
SatI GCNGC 4 cut(s) 111, 215, 303, 318
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 179, 185
SexAI ACCWGGT 1 cut(s) 177
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 447
SinI GGWCC 1 cut(s) 181
Sse9I AATT 1 cut(s) 254
SsiI CCGC 2 cut(s) 300, 410
StyD4I CCNGG 2 cut(s) 177, 183
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 3 cut(s) 50, 281, 485
TaqI TCGA 2 cut(s) 141, 151
TasI AATT 1 cut(s) 254
TatI WGTACW 2 cut(s) 281, 498
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 257
Tru9I TTAA 1 cut(s) 257
TseFI GTSAC 2 cut(s) 173, 194
TseI GCWGC 4 cut(s) 110, 214, 302, 317
Tsp45I GTSAC 2 cut(s) 173, 194
TspDTI ATGAA 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 181
XmnI GAANNNNTTC 2 cut(s) 147, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.