FvH4_6g36450

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000173
Physical Location & Seq
Reverse (-)
28683536 .. 28687432
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36450.t2

Sequence Viewer

Length: 2091 bp
ATGCTAAGAGAGAAAAACTTCAGGCAAGAAATTCCTCCAGTGAGAATAGGGGAAGGTGCTGAAATCACATTTGATCAGGCCACAGCTGCATACAGGAGGGCTGCTACCTTTTGGAATGCCTTGCAGTCACCCCATGGTCACTGGCCTGCTGAGAATAGTGGCCCAAACTTTTACATTCCTCCCATGGTTATGAGTTTACACTTGACAGGATATCTCAATGTTGTTTTCTCTGCTGAGCACAAGAAGGAGATCTTGCGCTACACATACAACCATCAGAATGAAGATGGTGGCTGGGGATTGCACATATCAGGGCCTAGTATGATGTTCACCACATGTCTCAACTATTGTATGATGCGTATTCTTGGAGAAGGCCCCGAGGGTGGTCGTGACAATGCCTGTGCAAGGGCCCGGAAATGGATCCTTGACCGCGGTGGCGCCCTGTATTCCGCTTCATGGGGAAAGACCTGGATGGCGATGCTTGGTGTTTATGATTGCGAAGGAAGCAACCCTATGCCCCCGGAATTTTGGACTTTCTCCACTCTAATTCCTTTTCATCCATCAAAGATGTGGTGCTTCTGCAGGTTAACTTACCTACCCATGTCCTACTTTTATGCAACAAAATTTGTTGGCCCTATCACTTCTCTCGTTGAACAGTTGAGAGAAGAAATTTACTGTGAACCTTACAGTGAGATTAAGTGGAGCAAAGTTCGCCATCATTGTGCGAAGGAAGATAACTACTCTCCTCGCGGAAAGGTACAACGTTTTATGTGGGACACTCTTTACCATGTTGCTGAACCTATTCTTGCTTTGTGGCCCTTTAAGAAGATCAGAGACAATGCTGTTCAATTTACCATTGACCAAATGAAGTATGAAGATGAGAACAGTCACTACATTACCATTGGATGCGTCCAAAAGCCATTGATGATGCTTGCTTGTTGGGCCGAGGATCCTAGCGGTGAAGCCTTTAAGAAGCATCTTGCTAGACTTGATGATTATATTTGGCTTGGTGAAGATGGAATGAAGATGCAGAGTTGTGGTAGCCAGACATGGGATTGTTCTTTTGGAATTCAAGCTTTGCTTGCAGGGAATCTCCTCAATGAATTTGGACCTGTACTTAAAAAAGCACATGACTTCCTAAAGATATCCCAGGTGAGGATTAATCCATCTGATGACTACCAAGCTCATTTTCGTCACATTTCCAAAGGATCCTGGACTTTCTCTGATCGGGATAATGGGTGGCAAGTTTCAGATTGCACTGCAGAAGCATTGAGGTGCTGCTGTTTGTTCGCGATGATGTCACCAGATCATGTTGGTGAGCCAATGGAAGCCGAGTGTATGTATGATGCTGTCAATGTCATAATGTCACTACAGAGTCCAAATGGTGGTGTGTCAGCCTGGGAGCCAACTGGAGCTCCTAAATGGTTGGAGTGGCTCAACCCTGTGGAATTTTGTGAGGACCTTGTAATTGAATATGATTACATCGAGTGCTCTTCATCTTCGATTCAGGCCTTAGTTTTGTTTAGGAAGTTGTTTCCTGGTTACAGAAGGAAAGAGATCAGAAACTTCATCACAAGGGCTGCAGACTACATTGAAATCACACAGTACGCTGATGGCTCATGGTATGGATGCTGGGGTATCTGCTTTCTCTATGGAACCTGGTTTGCAATTAAAGGGTTAGAGGCAGCAGGAAGAACCTACAACAATTGTGAGGCAATTCGCAAAGGTATTAACTTTTTGCTCAAAACACAAAGGGAAGATGGTGGTTGGGGAGAGCACTACACATCATGCCCGAACAAGAAATACACAGCTCAAGACAGCACAAATTTGGTGCAAACTGCCTTTGGATTGATGGGTCTAATTCACGGTCGGCAGGCTGAGAGAGATCCAACACCTATACACCGTGCTGCAAGGGTCTTGATGAACGGTCAGTTGGATGATGGTGATTTCCCCCAACAGGAACTGATGGGAGTTTTCATGAGGAATGGCATGTTACACTATGGAGCATATAGGAATGTTTTCCCATTGTGGGCTCTTGGAGAGTACCGTACGTACTCTGCAGCAGTTGCCTCACCAAAAGGATTCCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

697

Amino Acids

79.66

Weight (kDa)

6.15

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 100 - 401 7e-32 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 414 - 749 7.5e-47 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 1382
AccII CGCG 3 cut(s) 429, 747, 1289
AciI CCGC 5 cut(s) 427, 429, 447, 747, 954
AclI AACGTT 1 cut(s) 760
AclWI GGATC 7 cut(s) 412, 425, 941, 954, 1200, 1213, 1877
AcsI RAATTY 8 cut(s) 30, 521, 620, 666, 1065, 1100, 1445, 1822
AcuI CTGAAG 1 cut(s) 4
AcyI GRCGYC 1 cut(s) 435
AfaI GTAC 6 cut(s) 756, 1113, 1604, 2042, 2047, 2051
AfiI CCNNNNNNNGG 9 cut(s) 380, 402, 414, 453, 1048, 1152, 1382, 1954, 2026
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 5 cut(s) 650, 845, 1070, 1469, 1592
AjnI CCWGG 6 cut(s) 464, 1146, 1208, 1394, 1534, 1655
AjuI GAANNNNNNNTTGG 4 cut(s) 1170, 1202, 1913, 1945
AluBI AGCT 5 cut(s) 86, 1073, 1181, 1412, 1808
AluI AGCT 5 cut(s) 86, 1073, 1181, 1412, 1808
Alw21I GWGCWC 4 cut(s) 240, 1414, 1490, 1776
Alw26I GTCTC 2 cut(s) 341, 825
AlwI GGATC 7 cut(s) 412, 425, 941, 954, 1200, 1213, 1877
AlwNI CAGNNNCTG 1 cut(s) 1960
Ama87I CYCGRG 1 cut(s) 374
ApaI GGGCCC 1 cut(s) 409
ApeKI GCWGC 7 cut(s) 86, 101, 1275, 1577, 1682, 1904, 2057
ApoI RAATTY 8 cut(s) 30, 521, 620, 666, 1065, 1100, 1445, 1822
AseI ATTAAT 1 cut(s) 1158
Asp700I GAANNNNTTC 3 cut(s) 17, 798, 2015
AspLEI GCGC 2 cut(s) 258, 437
AsuC2I CCSGG 2 cut(s) 409, 518
AsuHPI GGTGA 9 cut(s) 120, 319, 968, 1019, 1162, 1290, 1325, 1952, 2061
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 2 cut(s) 1106, 1456
BaeGI GKGCMC 1 cut(s) 409
BamHI GGATCC 3 cut(s) 417, 946, 1205
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 3 cut(s) 409, 1414, 2032
Bbv12I GWGCWC 4 cut(s) 240, 1414, 1490, 1776
BbvI GCAGC 7 cut(s) 73, 88, 1262, 1564, 1694, 1891, 2069
BciT130I CCWGG 6 cut(s) 466, 1148, 1210, 1396, 1536, 1657
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 2 cut(s) 409, 518
BcoDI GTCTC 2 cut(s) 341, 825
BfaI CTAG 3 cut(s) 315, 951, 981
BfmI CTRYAG 5 cut(s) 577, 1257, 1367, 1578, 2055
BfoI RGCGCY 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 570
BglII AGATCT 1 cut(s) 249
BisI GCNGC 7 cut(s) 87, 102, 1276, 1578, 1683, 1905, 2058
BlpI GCTNAGC 1 cut(s) 234
BlsI GCNGC 7 cut(s) 88, 103, 1277, 1579, 1684, 1906, 2059
Bme1390I CCNGG 8 cut(s) 409, 466, 518, 1148, 1210, 1396, 1536, 1657
Bme18I GGWCC 2 cut(s) 1106, 1456
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 8 cut(s) 373, 407, 419, 436, 948, 1207, 1401, 1654
BmrFI CCNGG 8 cut(s) 409, 466, 518, 1148, 1210, 1396, 1536, 1657
BmsI GCATC 8 cut(s) 342, 465, 893, 915, 982, 1014, 1333, 1616
BpmI CTGGAG 2 cut(s) 21, 1428
Bpu1102I GCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 1794
BpuMI CCSGG 2 cut(s) 409, 518
BsaAI YACGTR 1 cut(s) 2049
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 8 cut(s) 133, 183, 375, 427, 516, 942, 1146, 1395
BsaXI ACNNNNNCTCC 2 cut(s) 1396, 1426
Bsc4I CCNNNNNNNGG 9 cut(s) 380, 402, 414, 453, 1048, 1152, 1382, 1954, 2026
Bse1I ACTGG 3 cut(s) 38, 146, 1411
BseBI CCWGG 6 cut(s) 466, 1148, 1210, 1396, 1536, 1657
BseDI CCNNGG 8 cut(s) 133, 183, 375, 427, 516, 942, 1146, 1395
BseGI GGATG 5 cut(s) 474, 553, 908, 1631, 1939
BseLI CCNNNNNNNGG 9 cut(s) 380, 402, 414, 453, 1048, 1152, 1382, 1954, 2026
BseMII CTCAG 3 cut(s) 141, 225, 1866
BseNI ACTGG 3 cut(s) 38, 146, 1411
BseRI GAGGAG 2 cut(s) 732, 1082
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 7 cut(s) 73, 88, 1262, 1564, 1694, 1891, 2069
BseYI CCCAGC 2 cut(s) 291, 1629
Bsh1236I CGCG 3 cut(s) 429, 747, 1289
Bsh1285I CGRYCG 1 cut(s) 1867
BshNI GGYRCC 1 cut(s) 434
BsiEI CGRYCG 1 cut(s) 1867
BsiHKAI GWGCWC 4 cut(s) 240, 1414, 1490, 1776
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 2 cut(s) 409, 518
BsiWI CGTACG 1 cut(s) 2045
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 9 cut(s) 380, 402, 414, 453, 1048, 1152, 1382, 1954, 2026
BsmAI GTCTC 2 cut(s) 341, 825
BsmFI GGGAC 1 cut(s) 785
BsmI GAATGC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 374
Bsp120I GGGCCC 1 cut(s) 405
Bsp1286I GDGCHC 6 cut(s) 240, 409, 1414, 1490, 1776, 2032
Bsp1720I GCTNAGC 1 cut(s) 234
Bsp19I CCATGG 2 cut(s) 133, 183
Bsp68I TCGCGA 1 cut(s) 1289
BspACI CCGC 5 cut(s) 427, 429, 447, 747, 954
BspCNI CTCAG 3 cut(s) 142, 226, 1867
BspFNI CGCG 3 cut(s) 429, 747, 1289
BspHI TCATGA 1 cut(s) 1974
BspLI GGNNCC 8 cut(s) 373, 407, 419, 436, 948, 1207, 1401, 1654
BspMAI CTGCAG 4 cut(s) 581, 1261, 1582, 2059
BspMI ACCTGC 1 cut(s) 570
BspPI GGATC 7 cut(s) 412, 425, 941, 954, 1200, 1213, 1877
BspQI GCTCTTC 1 cut(s) 1495
BspT107I GGYRCC 1 cut(s) 434
BsrI ACTGG 3 cut(s) 38, 146, 1411
BssECI CCNNGG 8 cut(s) 133, 183, 375, 427, 516, 942, 1146, 1395
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 133, 183
Bst2UI CCWGG 6 cut(s) 466, 1148, 1210, 1396, 1536, 1657
Bst4CI ACNGT 9 cut(s) 654, 674, 686, 884, 1602, 1865, 1901, 1925, 2045
Bst6I CTCTTC 1 cut(s) 1495
BstACI GRCGYC 1 cut(s) 435
BstAPI GCANNNNNTGC 1 cut(s) 2063
BstBAI YACGTR 1 cut(s) 2049
BstC8I GCNNGC 4 cut(s) 147, 930, 1080, 1872
BstDEI CTNAG 5 cut(s) 5, 150, 234, 1510, 1875
BstDSI CCRYGG 3 cut(s) 133, 183, 427
BstENI CCTNNNNNAGG 1 cut(s) 400
BstF5I GGATG 5 cut(s) 474, 553, 908, 1631, 1939
BstFNI CGCG 3 cut(s) 429, 747, 1289
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 2 cut(s) 258, 437
BstMAI GTCTC 2 cut(s) 341, 825
BstMCI CGRYCG 1 cut(s) 1867
BstMWI GCNNNNNNNGC 6 cut(s) 86, 501, 708, 938, 1079, 2063
BstNI CCWGG 6 cut(s) 466, 1148, 1210, 1396, 1536, 1657
BstNSI RCATGY 2 cut(s) 336, 1990
BstSCI CCNGG 8 cut(s) 407, 464, 516, 1146, 1208, 1394, 1534, 1655
BstSFI CTRYAG 5 cut(s) 577, 1257, 1367, 1578, 2055
BstSLI GKGCMC 1 cut(s) 409
BstSNI TACGTA 1 cut(s) 2049
BstUI CGCG 3 cut(s) 429, 747, 1289
BstV1I GCAGC 7 cut(s) 73, 88, 1262, 1564, 1694, 1891, 2069
BstX2I RGATCY 5 cut(s) 249, 417, 946, 1205, 1882
BstYI RGATCY 5 cut(s) 249, 417, 946, 1205, 1882
BtgI CCRYGG 3 cut(s) 133, 183, 427
BtgZI GCGATG 2 cut(s) 488, 1304
BtsCI GGATG 5 cut(s) 474, 553, 908, 1631, 1939
BtsI GCAGTG 1 cut(s) 1254
BtsIMutI CAGTG 4 cut(s) 45, 139, 691, 1254
BtuMI TCGCGA 1 cut(s) 1289
BveI ACCTGC 1 cut(s) 570
Cac8I GCNNGC 4 cut(s) 147, 930, 1080, 1872
CaiI CAGNNNCTG 1 cut(s) 1960
CciI TCATGA 1 cut(s) 1974
CfoI GCGC 2 cut(s) 258, 437
Cfr42I CCGCGG 1 cut(s) 430
CseI GACGC 1 cut(s) 895
CsiI ACCWGGT 1 cut(s) 1655
Csp6I GTAC 6 cut(s) 755, 1112, 1603, 2041, 2046, 2050
CviQI GTAC 6 cut(s) 755, 1112, 1603, 2041, 2046, 2050
DdeI CTNAG 5 cut(s) 5, 150, 234, 1510, 1875
DinI GGCGCC 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 1495
EarI CTCTTC 1 cut(s) 1495
Ecl136II GAGCTC 1 cut(s) 1412
Eco105I TACGTA 1 cut(s) 2049
Eco130I CCWWGG 2 cut(s) 133, 183
Eco147I AGGCCT 1 cut(s) 1508
Eco24I GRGCYC 3 cut(s) 409, 1414, 2032
Eco32I GATATC 2 cut(s) 212, 1143
Eco47I GGWCC 2 cut(s) 1106, 1456
Eco53kI GAGCTC 1 cut(s) 1412
Eco57I CTGAAG 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 1412
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoO109I RGGNCCY 4 cut(s) 311, 371, 405, 1456
EcoRI GAATTC 1 cut(s) 1065
EcoRII CCWGG 6 cut(s) 464, 1146, 1208, 1394, 1534, 1655
EcoRV GATATC 2 cut(s) 212, 1143
EcoT14I CCWWGG 2 cut(s) 133, 183
EcoT38I GRGCYC 3 cut(s) 409, 1414, 2032
EgeI GGCGCC 1 cut(s) 436
EheI GGCGCC 1 cut(s) 436
ErhI CCWWGG 2 cut(s) 133, 183
FalI AAGNNNNNCTT 4 cut(s) 236, 268, 1062, 1094
FaqI GGGAC 1 cut(s) 785
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 7 cut(s) 87, 102, 1276, 1578, 1683, 1905, 2058
FokI GGATG 5 cut(s) 481, 540, 915, 1638, 1946
FriOI GRGCYC 3 cut(s) 409, 1414, 2032
Fsp4HI GCNGC 7 cut(s) 87, 102, 1276, 1578, 1683, 1905, 2058
FspBI CTAG 3 cut(s) 315, 951, 981
GlaI GCGC 2 cut(s) 257, 436
GluI GCNGC 7 cut(s) 87, 102, 1276, 1578, 1683, 1905, 2058
GsaI CCCAGC 2 cut(s) 295, 1633
GsuI CTGGAG 2 cut(s) 21, 1428
HaeII RGCGCY 1 cut(s) 438
HapII CCGG 2 cut(s) 409, 518
HgaI GACGC 1 cut(s) 895
HhaI GCGC 2 cut(s) 258, 437
Hin1I GRCGYC 1 cut(s) 435
Hin6I GCGC 2 cut(s) 256, 435
HinP1I GCGC 2 cut(s) 256, 435
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 1 cut(s) 1071
HinfI GANTC 4 cut(s) 1087, 1372, 1501, 2079
HpaI GTTAAC 1 cut(s) 585
HpaII CCGG 2 cut(s) 409, 518
HphI GGTGA 9 cut(s) 120, 319, 968, 1019, 1162, 1290, 1325, 1952, 2061
Hpy166II GTNNAC 4 cut(s) 197, 327, 585, 677
Hpy188I TCNGA 6 cut(s) 276, 830, 1168, 1222, 1249, 1559
Hpy188III TCNNGA 6 cut(s) 386, 1226, 1288, 1811, 1915, 1975
Hpy8I GTNNAC 4 cut(s) 197, 327, 585, 677
HpyAV CCTTC 6 cut(s) 47, 238, 362, 491, 718, 1539
HpyCH4III ACNGT 9 cut(s) 654, 674, 686, 884, 1602, 1865, 1901, 1925, 2045
HpyCH4IV ACGT 2 cut(s) 760, 2048
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 501, 708, 938, 1079, 2063
HpyF3I CTNAG 5 cut(s) 5, 150, 234, 1510, 1875
HpySE526I ACGT 2 cut(s) 760, 2048
Hsp92I GRCGYC 1 cut(s) 435
HspAI GCGC 2 cut(s) 256, 435
KasI GGCGCC 1 cut(s) 434
Ksp22I TGATCA 1 cut(s) 73
KspAI GTTAAC 1 cut(s) 585
KspI CCGCGG 1 cut(s) 430
LguI GCTCTTC 1 cut(s) 1495
LmnI GCTCC 5 cut(s) 699, 1399, 1409, 1417, 2000
Lsp1109I GCAGC 7 cut(s) 73, 88, 1262, 1564, 1694, 1891, 2069
LweI GCATC 8 cut(s) 342, 465, 893, 915, 982, 1014, 1333, 1616
MabI ACCWGGT 1 cut(s) 1655
MaeI CTAG 3 cut(s) 315, 951, 981
MaeII ACGT 2 cut(s) 760, 2048
MaeIII GTNAC 9 cut(s) 126, 137, 386, 884, 1190, 1296, 1362, 1538, 1989
MfeI CAATTG 1 cut(s) 1702
MflI RGATCY 5 cut(s) 249, 417, 946, 1205, 1882
MhlI GDGCHC 6 cut(s) 240, 409, 1414, 1490, 1776, 2032
Mly113I GGCGCC 1 cut(s) 435
MlyI GAGTC 1 cut(s) 1381
MmeI TCCRAC 3 cut(s) 1404, 1910, 1911
MroXI GAANNNNTTC 3 cut(s) 17, 798, 2015
MseI TTAA 8 cut(s) 584, 693, 819, 966, 1116, 1158, 1668, 1728
MslI CAYNNNNRTG 5 cut(s) 188, 276, 717, 1270, 1311
MspA1I CMGCKG 2 cut(s) 86, 429
MspI CCGG 2 cut(s) 409, 518
MspR9I CCNGG 8 cut(s) 409, 466, 518, 1148, 1210, 1396, 1536, 1657
MunI CAATTG 1 cut(s) 1702
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 6 cut(s) 466, 1148, 1210, 1396, 1536, 1657
MvnI CGCG 3 cut(s) 429, 747, 1289
MwoI GCNNNNNNNGC 6 cut(s) 86, 501, 708, 938, 1079, 2063
NarI GGCGCC 1 cut(s) 435
NciI CCSGG 2 cut(s) 409, 518
NcoI CCATGG 2 cut(s) 133, 183
NlaIV GGNNCC 8 cut(s) 373, 407, 419, 436, 948, 1207, 1401, 1654
NmeAIII GCCGAG 2 cut(s) 967, 1354
NmuCI GTSAC 7 cut(s) 126, 137, 386, 884, 1190, 1296, 1362
NruI TCGCGA 1 cut(s) 1289
NspI RCATGY 2 cut(s) 336, 1990
PagI TCATGA 1 cut(s) 1974
PceI AGGCCT 1 cut(s) 1508
PciI ACATGT 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 1495
PctI GAATGC 1 cut(s) 121
PdmI GAANNNNTTC 3 cut(s) 17, 798, 2015
PfeI GAWTC 3 cut(s) 1087, 1501, 2079
Pfl23II CGTACG 1 cut(s) 2045
PflMI CCANNNNNTGG 1 cut(s) 1382
PfoI TCCNGGA 1 cut(s) 1208
PkrI GCNGC 7 cut(s) 88, 103, 1277, 1579, 1684, 1906, 2059
PleI GAGTC 1 cut(s) 1380
PluTI GGCGCC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 1380
Ppu21I YACGTR 1 cut(s) 2049
PpuMI RGGWCCY 1 cut(s) 1456
PscI ACATGT 1 cut(s) 332
PshBI ATTAAT 1 cut(s) 1158
Psp124BI GAGCTC 1 cut(s) 1414
Psp1406I AACGTT 1 cut(s) 760
Psp5II RGGWCCY 1 cut(s) 1456
Psp6I CCWGG 6 cut(s) 464, 1146, 1208, 1394, 1534, 1655
PspFI CCCAGC 2 cut(s) 291, 1629
PspGI CCWGG 6 cut(s) 464, 1146, 1208, 1394, 1534, 1655
PspLI CGTACG 1 cut(s) 2045
PspN4I GGNNCC 8 cut(s) 373, 407, 419, 436, 948, 1207, 1401, 1654
PspOMI GGGCCC 1 cut(s) 405
PspPPI RGGWCCY 1 cut(s) 1456
PsrI GAACNNNNNNTAC 4 cut(s) 872, 904, 1784, 1816
PstI CTGCAG 4 cut(s) 581, 1261, 1582, 2059
PstNI CAGNNNCTG 1 cut(s) 1960
PsuI RGATCY 5 cut(s) 249, 417, 946, 1205, 1882
PvuII CAGCTG 1 cut(s) 86
RruI TCGCGA 1 cut(s) 1289
RsaI GTAC 6 cut(s) 756, 1113, 1604, 2042, 2047, 2051
RsaNI GTAC 6 cut(s) 755, 1112, 1603, 2041, 2046, 2050
RseI CAYNNNNRTG 5 cut(s) 188, 276, 717, 1270, 1311
SacI GAGCTC 1 cut(s) 1414
SacII CCGCGG 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 1495
SaqAI TTAA 8 cut(s) 584, 693, 819, 966, 1116, 1158, 1668, 1728
SatI GCNGC 7 cut(s) 87, 102, 1276, 1578, 1683, 1905, 2058
SchI GAGTC 1 cut(s) 1381
ScrFI CCNGG 8 cut(s) 409, 466, 518, 1148, 1210, 1396, 1536, 1657
SduI GDGCHC 6 cut(s) 240, 409, 1414, 1490, 1776, 2032
SexAI ACCWGGT 1 cut(s) 1655
SfaNI GCATC 8 cut(s) 342, 465, 893, 915, 982, 1014, 1333, 1616
SfcI CTRYAG 5 cut(s) 577, 1257, 1367, 1578, 2055
SfoI GGCGCC 1 cut(s) 436
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 2 cut(s) 1106, 1456
SmiMI CAYNNNNRTG 5 cut(s) 188, 276, 717, 1270, 1311
SmlI CTYRAG 1 cut(s) 1809
SmoI CTYRAG 1 cut(s) 1809
SnaBI TACGTA 1 cut(s) 2049
SseBI AGGCCT 1 cut(s) 1508
SsiI CCGC 5 cut(s) 427, 429, 447, 747, 954
SspDI GGCGCC 1 cut(s) 434
SspMI CTAG 3 cut(s) 315, 951, 981
SstI GAGCTC 1 cut(s) 1414
StuI AGGCCT 1 cut(s) 1508
StyD4I CCNGG 8 cut(s) 407, 464, 516, 1146, 1208, 1394, 1534, 1655
StyI CCWWGG 2 cut(s) 133, 183
TaaI ACNGT 9 cut(s) 654, 674, 686, 884, 1602, 1865, 1901, 1925, 2045
TaiI ACGT 2 cut(s) 763, 2051
TaqI TCGA 2 cut(s) 1482, 1499
TatI WGTACW 1 cut(s) 1111
TfiI GAWTC 3 cut(s) 1087, 1501, 2079
Tru1I TTAA 8 cut(s) 584, 693, 819, 966, 1116, 1158, 1668, 1728
Tru9I TTAA 8 cut(s) 584, 693, 819, 966, 1116, 1158, 1668, 1728
TscAI CASTG 4 cut(s) 45, 146, 691, 1261
TseFI GTSAC 7 cut(s) 126, 137, 386, 884, 1190, 1296, 1362
TseI GCWGC 7 cut(s) 86, 101, 1275, 1577, 1682, 1904, 2057
Tsp45I GTSAC 7 cut(s) 126, 137, 386, 884, 1190, 1296, 1362
TspRI CASTG 4 cut(s) 45, 146, 691, 1261
Van91I CCANNNNNTGG 1 cut(s) 1382
VpaK11BI GGWCC 2 cut(s) 1106, 1456
VspI ATTAAT 1 cut(s) 1158
XagI CCTNNNNNAGG 1 cut(s) 400
XapI RAATTY 8 cut(s) 30, 521, 620, 666, 1065, 1100, 1445, 1822
XceI RCATGY 2 cut(s) 336, 1990
XcmI CCANNNNNNNNNTGG 1 cut(s) 564
XmnI GAANNNNTTC 3 cut(s) 17, 798, 2015
XspI CTAG 3 cut(s) 315, 951, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.