Rorug02G0372300

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000173
Physical Location & Seq
Reverse (-)
47459454 .. 47465828
6375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0372300.1

Sequence Viewer

Length: 2232 bp
ATGTCATTCTCGCTTGCCTCCAAATGGCTCCACCCTTTAACCTTCATGAAAATGGTCTCTGTGGCAGCTTCGGCTCCAGCCCACTTGGGTACACATACCCAGTTTCATTCTTTAGAAAACCTGCCAATACTCTTTGAAAATTGGAAATCCATGGACCAACTGAAGCAAATGCATGCTCAAACCATTAAAACAGGTTTCGCATCGGACCCGGCCATGCTGAACAGGATCATAGTCTTCTGTTGTACCCATGAATTTGGTGACATGAAGTATGCACGCCAGGTGTTTGTTAGAATTCCTGAACCAAGTGTTTTTATTTGCAACACCATGATCAAAGGCTATAGTAGGACACATTGCCCACATTATGGGATATCTATGTATTCAGCAATGCGGAAGATGGGTGTGAAGCCCGATTGCTATACGTTCCCCTTCTTGTTAAGGGGATTTTCTCGTGAGATTGCATTGGAATGGGGGAGAGGGTTCCATGCTCATGTGTTGAAGTATGGTTTCGATTCTAATGTTTTCGTTCACAATGCGTTGGTGCATATGTACTCTCTTTGTGGTCAAATTGATATGGCTCGTGGGGTTTTCGATATGGTCAGTGAGAAGGATGTTGCTACTTGGAATGCAATGATCTCTGGGTACAATAAGATCAAGAAGTTCGATGAGTCCTGGAGGCTTTTCCGTGACATGGAGAAGAAGGGAGTGTTTCCCACTTCTGTCACCCTTGTCTCAGTACTTTCAGCTTGCTCCAAATTGAAGGATTTAGATGCTGGGAAGCAGGTTCACAACTACGTCAAGGAGTGTGTGGTCGAACCTAATCTAGTTTTGGAGAATGCTTTGATTGACATGTATGCTGCTTGTGGGAAGATGGATGTTGCACTTGAGATTTTTGAGAATATGAAAAGGAGGGATGTAATTTCTTGGACTACCATTGTTAAGGGGTTTTGCAATTCAGGACAAGTTGATTTAGCTCGAGATTACTTTGATCAGATGCCAGACAGAGACTATATTTCATGGACTGCAATAATTGATGGGTACGTAAGGGTGAACCGGTTCAAAGATGTTTTGGAACTCTTCCGTGAGATGCAGACTTCAAATATAAAACCAGATGAGTATACCATGGTAAGCATTCTAACAGCTTGTGCACATCTTGGAGCACTAGAACTCGGAGAATGGATAAGAACTTACATTGACAAAAACAAGATCAAGAATGACACGTTTGTGCGAAATGCTTTAATAGACATGTATTTCAAGTGTGGAAATGTTGAAAAAGCTGTGAGGGTATTCAATGAAATGCTTCAAAAGGACAAATTTACCTGGACAGCTATGATTGTTGGCCTTGCGATTAATGGACACAGTAAGGAATCTCTTGACATGTTCAGTCAAATGCTGAAATCTGCAGTAGCTCCGGACAAGATAACATTGCTTGGTGTTCTTTGTGCATGTACTCACTCTGGCATGGTCGATGAAGGTAGAATGTTTTTCTCTAGTATGATCACCCTACATAGGATTGAGCCTACTGTTGAGCATTACGGGTGCATGGTGGATCTTCTTGGTCGAGCAGGGCGTCTTAAAGAAGCTTATGAGGTTATACAGAACATGCCAATAGAACCAAACTCAGTTGTTTGGGGAACTCTTCTCGGTGCTTGTAGAATGCATAAAGATGCAGAACTGGCTGAAGTTGTGGCAAAACAGATACTAGATTTGGATCCCGAAAACAGTGCTGTTTATGCTCTCTTATGCAATATATATGCAGCTTGCAACAAATGGGAAAGATTCCGCGAGGTAAGGCAAACGATTATGGATAGGGGGATCAAGAAGACTCCTGGTTGTAGTTTGATAGAGGTGAATGGTGATGTTCATGAGTTTGTAGCCGGGGATGGCTCACATCCTCAATCCGAAAAGATATATTCCAAGTTGGATGAGATGATTAAAGACTTGAAATCTGCAGGGTATTCACCTGATACGTCCGAGGTTTTTCTTGATGTAGGGGAAGAGAATAAGGAGAGTGCAGTTTATAAGCACAGTGAGAAGTTAGCAATTGCGTTTGGATTGATTAGTTTAGGACCTAGGGTGACTATTAGAGTCATGAAGAACCTCAGAATCTGTGTGGATTGTCACAGCATGGCAAAGCTGGTTTCCAAGGTGTATGATAGAGAAGTGATTGTTAGAGATGGAACTCGGTTCCACCATTTTAGACATGGCTCATGTTCATGTAAAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

743

Amino Acids

84.54

Weight (kDa)

7.52

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 101 - 149 5.8e-10 PPR repeat family
PPR_2 PF13041 202 - 251 6.2e-13 PPR repeat family
PPR PF01535 206 - 235 2.5e-07 PPR repeat
PPR_3 PF13812 225 - 284 7.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 304 - 331 7.2e-06 PPR repeat
PPR_2 PF13041 335 - 383 2.6e-12 PPR repeat family
PPR PF01535 337 - 367 2.7e-06 PPR repeat
PPR_2 PF13041 405 - 435 2.4e-06 PPR repeat family
PPR PF01535 410 - 435 3.6e-06 PPR repeat
PPR_2 PF13041 436 - 482 3.7e-06 PPR repeat family
E_motif PF20431 553 - 615 1e-14 E motif
Eplus_motif PF20430 620 - 645 1.1e-07 E+ motif
DYW_deaminase PF14432 651 - 743 1e-36 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2019
Acc36I ACCTGC 2 cut(s) 129, 769
AccB7I CCANNNNNTGG 1 cut(s) 362
AccI GTMKAC 1 cut(s) 1115
AccII CGCG 1 cut(s) 1782
AccIII TCCGGA 1 cut(s) 1408
AciI CCGC 2 cut(s) 388, 1780
AclWI GGATC 5 cut(s) 233, 1554, 1703, 1716, 1820
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 3 cut(s) 251, 291, 1310
AcuI CTGAAG 2 cut(s) 182, 1698
AcyI GRCGYC 1 cut(s) 1567
AfaI GTAC 7 cut(s) 91, 244, 548, 641, 735, 1037, 1447
AfiI CCNNNNNNNGG 4 cut(s) 24, 362, 688, 1506
AflIII ACRYGT 4 cut(s) 846, 1215, 1242, 1374
AgeI ACCGGT 1 cut(s) 1050
AjnI CCWGG 4 cut(s) 276, 668, 1316, 1825
AleI CACNNNNGTG 1 cut(s) 1220
Alw21I GWGCWC 2 cut(s) 1147, 1159
Alw26I GTCTC 3 cut(s) 61, 733, 996
Alw44I GTGCAC 1 cut(s) 1143
AlwI GGATC 5 cut(s) 233, 1554, 1703, 1716, 1820
AlwNI CAGNNNCTG 1 cut(s) 2106
Ama87I CYCGRG 1 cut(s) 972
Aor13HI TCCGGA 1 cut(s) 1408
AoxI GGCC 2 cut(s) 210, 1336
ApaLI GTGCAC 1 cut(s) 1143
ApeKI GCWGC 3 cut(s) 65, 854, 1754
ApoI RAATTY 3 cut(s) 251, 291, 1310
AseI ATTAAT 1 cut(s) 1347
AsiGI ACCGGT 1 cut(s) 1050
Asp700I GAANNNNTTC 2 cut(s) 1052, 1296
AspA2I CCTAGG 1 cut(s) 2069
AspS9I GGNCC 3 cut(s) 154, 205, 2066
AsuC2I CCSGG 2 cut(s) 209, 1876
AsuHPI GGTGA 8 cut(s) 269, 712, 1057, 1489, 1858, 1865, 1950, 2086
AvaI CYCGRG 1 cut(s) 972
AvaII GGWCC 3 cut(s) 154, 205, 2066
AvrII CCTAGG 1 cut(s) 2069
BaeGI GKGCMC 1 cut(s) 1147
BamHI GGATCC 1 cut(s) 1708
BauI CACGAG 2 cut(s) 447, 576
BbsI GAAGAC 2 cut(s) 226, 1826
Bbv12I GWGCWC 2 cut(s) 1147, 1159
BbvI GCAGC 3 cut(s) 77, 841, 1766
BccI CCATC 5 cut(s) 388, 862, 1025, 1874, 2168
BcgI CGANNNNNNTGC 2 cut(s) 1703, 1737
BciT130I CCWGG 4 cut(s) 278, 670, 1318, 1827
BclI TGATCA 3 cut(s) 327, 985, 1494
BcnI CCSGG 2 cut(s) 209, 1876
BcoDI GTCTC 3 cut(s) 61, 733, 996
BfaI CTAG 5 cut(s) 821, 1160, 1488, 1700, 2070
BfmI CTRYAG 3 cut(s) 337, 1398, 1947
BfuAI ACCTGC 2 cut(s) 129, 769
BisI GCNGC 3 cut(s) 66, 855, 1755
BlnI CCTAGG 1 cut(s) 2069
BlsI GCNGC 3 cut(s) 67, 856, 1756
BmcAI AGTACT 1 cut(s) 735
Bme1390I CCNGG 6 cut(s) 209, 278, 670, 1318, 1827, 1876
Bme18I GGWCC 3 cut(s) 154, 205, 2066
BmeT110I CYCGRG 1 cut(s) 972
BmgT120I GGNCC 3 cut(s) 154, 205, 2066
BmiI GGNNCC 6 cut(s) 29, 75, 207, 479, 1710, 2186
BmrFI CCNGG 6 cut(s) 209, 278, 670, 1318, 1827, 1876
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 5 cut(s) 209, 757, 981, 1074, 1654
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 2 cut(s) 226, 1826
BpmI CTGGAG 2 cut(s) 60, 691
BpuEI CTTGAG 1 cut(s) 902
BpuMI CCSGG 2 cut(s) 209, 1876
BsaAI YACGTR 1 cut(s) 1039
BsaBI GATNNNNATC 1 cut(s) 1707
BsaHI GRCGYC 1 cut(s) 1567
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 6 cut(s) 150, 1119, 1875, 1971, 2069, 2142
BsaWI WCCGGW 2 cut(s) 1050, 1408
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 362, 688, 1506
Bse118I RCCGGY 1 cut(s) 1050
Bse1I ACTGG 2 cut(s) 100, 1677
Bse3DI GCAATG 4 cut(s) 349, 390, 633, 1421
Bse8I GATNNNNATC 1 cut(s) 1707
BseAI TCCGGA 1 cut(s) 1408
BseBI CCWGG 4 cut(s) 278, 670, 1318, 1827
BseDI CCNNGG 6 cut(s) 150, 1119, 1875, 1971, 2069, 2142
BseGI GGATG 6 cut(s) 613, 877, 916, 1885, 1888, 1927
BseJI GATNNNNATC 1 cut(s) 1707
BseLI CCNNNNNNNGG 4 cut(s) 24, 362, 688, 1506
BseMI GCAATG 4 cut(s) 349, 390, 633, 1421
BseMII CTCAG 3 cut(s) 744, 1632, 2113
BseNI ACTGG 2 cut(s) 100, 1677
BseSI GKGCMC 1 cut(s) 1147
BseXI GCAGC 3 cut(s) 77, 841, 1766
BseYI CCCAGC 1 cut(s) 770
BsgI GTGCAG 1 cut(s) 2031
Bsh1236I CGCG 1 cut(s) 1782
BshFI GGCC 2 cut(s) 212, 1338
BshTI ACCGGT 1 cut(s) 1050
BsiHKAI GWGCWC 2 cut(s) 1147, 1159
BsiHKCI CYCGRG 1 cut(s) 972
BsiSI CCGG 4 cut(s) 209, 1051, 1409, 1875
BslI CCNNNNNNNGG 4 cut(s) 24, 362, 688, 1506
BsmAI GTCTC 3 cut(s) 61, 733, 996
BsmI GAATGC 4 cut(s) 628, 838, 1128, 1659
BsnI GGCC 2 cut(s) 212, 1338
Bso31I GGTCTC 1 cut(s) 61
BsoBI CYCGRG 1 cut(s) 972
Bsp1286I GDGCHC 2 cut(s) 1147, 1159
Bsp13I TCCGGA 1 cut(s) 1408
Bsp19I CCATGG 2 cut(s) 150, 1119
BspACI CCGC 2 cut(s) 388, 1780
BspANI GGCC 2 cut(s) 212, 1338
BspCNI CTCAG 3 cut(s) 743, 1631, 2112
BspEI TCCGGA 1 cut(s) 1408
BspFNI CGCG 1 cut(s) 1782
BspHI TCATGA 3 cut(s) 45, 1861, 2088
BspLI GGNNCC 6 cut(s) 29, 75, 207, 479, 1710, 2186
BspMAI CTGCAG 2 cut(s) 1402, 1951
BspMI ACCTGC 2 cut(s) 129, 769
BspPI GGATC 5 cut(s) 233, 1554, 1703, 1716, 1820
BspTNI GGTCTC 1 cut(s) 61
BsrDI GCAATG 4 cut(s) 349, 390, 633, 1421
BsrFI RCCGGY 1 cut(s) 1050
BsrI ACTGG 2 cut(s) 100, 1677
BssAI RCCGGY 1 cut(s) 1050
BssECI CCNNGG 6 cut(s) 150, 1119, 1875, 1971, 2069, 2142
BssNAI GTATAC 1 cut(s) 1116
BssNI GRCGYC 1 cut(s) 1567
BssSI CACGAG 2 cut(s) 447, 576
BssT1I CCWWGG 4 cut(s) 150, 1119, 2069, 2142
Bst1107I GTATAC 1 cut(s) 1116
Bst2BI CACGAG 2 cut(s) 447, 576
Bst2UI CCWGG 4 cut(s) 278, 670, 1318, 1827
Bst4CI ACNGT 4 cut(s) 1358, 1522, 1721, 2027
Bst6I CTCTTC 3 cut(s) 1079, 1641, 1989
BstACI GRCGYC 1 cut(s) 1567
BstBAI YACGTR 1 cut(s) 1039
BstC8I GCNNGC 5 cut(s) 15, 174, 274, 745, 1759
BstDEI CTNAG 3 cut(s) 730, 1618, 2099
BstDSI CCRYGG 2 cut(s) 150, 1119
BstF5I GGATG 6 cut(s) 613, 877, 916, 1885, 1888, 1927
BstFNI CGCG 1 cut(s) 1782
BstMAI GTCTC 3 cut(s) 61, 733, 996
BstMWI GCNNNNNNNGC 3 cut(s) 71, 1673, 1730
BstNI CCWGG 4 cut(s) 278, 670, 1318, 1827
BstNSI RCATGY 6 cut(s) 176, 850, 1246, 1378, 1446, 1603
BstSCI CCNGG 6 cut(s) 207, 276, 668, 1316, 1825, 1874
BstSFI CTRYAG 3 cut(s) 337, 1398, 1947
BstSLI GKGCMC 1 cut(s) 1147
BstSNI TACGTA 1 cut(s) 1039
BstUI CGCG 1 cut(s) 1782
BstV1I GCAGC 3 cut(s) 77, 841, 1766
BstV2I GAAGAC 2 cut(s) 226, 1826
BstX2I RGATCY 2 cut(s) 1546, 1708
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 2 cut(s) 1546, 1708
BstZ17I GTATAC 1 cut(s) 1116
BsuRI GGCC 2 cut(s) 212, 1338
BtgI CCRYGG 2 cut(s) 150, 1119
BtsCI GGATG 6 cut(s) 613, 877, 916, 1885, 1888, 1927
BtsIMutI CAGTG 3 cut(s) 604, 1726, 2032
BveI ACCTGC 2 cut(s) 129, 769
Cac8I GCNNGC 5 cut(s) 15, 174, 274, 745, 1759
CaiI CAGNNNCTG 1 cut(s) 2106
CciI TCATGA 3 cut(s) 45, 1861, 2088
Cfr10I RCCGGY 1 cut(s) 1050
Cfr13I GGNCC 3 cut(s) 154, 205, 2066
CseI GACGC 1 cut(s) 1556
Csp6I GTAC 7 cut(s) 90, 243, 547, 640, 734, 1036, 1446
CspAI ACCGGT 1 cut(s) 1050
CviQI GTAC 7 cut(s) 90, 243, 547, 640, 734, 1036, 1446
DdeI CTNAG 3 cut(s) 730, 1618, 2099
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 3 cut(s) 1079, 1641, 1989
EarI CTCTTC 3 cut(s) 1079, 1641, 1989
Eco105I TACGTA 1 cut(s) 1039
Eco130I CCWWGG 4 cut(s) 150, 1119, 2069, 2142
Eco31I GGTCTC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 369
Eco47I GGWCC 3 cut(s) 154, 205, 2066
Eco57I CTGAAG 2 cut(s) 182, 1698
Eco88I CYCGRG 1 cut(s) 972
EcoO109I RGGNCCY 1 cut(s) 2066
EcoRI GAATTC 1 cut(s) 291
EcoRII CCWGG 4 cut(s) 276, 668, 1316, 1825
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 4 cut(s) 150, 1119, 2069, 2142
EcoT22I ATGCAT 2 cut(s) 174, 1659
ErhI CCWWGG 4 cut(s) 150, 1119, 2069, 2142
FauNDI CATATG 1 cut(s) 543
FbaI TGATCA 3 cut(s) 327, 985, 1494
FblI GTMKAC 1 cut(s) 1115
Fnu4HI GCNGC 3 cut(s) 66, 855, 1755
FokI GGATG 6 cut(s) 620, 884, 923, 1875, 1892, 1934
Fsp4HI GCNGC 3 cut(s) 66, 855, 1755
FspBI CTAG 5 cut(s) 821, 1160, 1488, 1700, 2070
GluI GCNGC 3 cut(s) 66, 855, 1755
GsaI CCCAGC 1 cut(s) 774
GsuI CTGGAG 2 cut(s) 60, 691
HaeIII GGCC 2 cut(s) 212, 1338
HapII CCGG 4 cut(s) 209, 1051, 1409, 1875
HgaI GACGC 1 cut(s) 1556
Hin1I GRCGYC 1 cut(s) 1567
HindIII AAGCTT 1 cut(s) 1578
HinfI GANTC 7 cut(s) 509, 665, 1364, 1776, 1822, 2085, 2103
HpaII CCGG 4 cut(s) 209, 1051, 1409, 1875
HphI GGTGA 8 cut(s) 269, 712, 1057, 1489, 1858, 1865, 1950, 2086
Hpy166II GTNNAC 6 cut(s) 92, 526, 784, 1048, 1116, 1145
Hpy188I TCNGA 6 cut(s) 205, 990, 1169, 1900, 1972, 2102
Hpy8I GTNNAC 6 cut(s) 92, 526, 784, 1048, 1116, 1145
HpyAV CCTTC 6 cut(s) 52, 436, 598, 691, 751, 1463
HpyCH4III ACNGT 4 cut(s) 1358, 1522, 1721, 2027
HpyCH4IV ACGT 5 cut(s) 419, 792, 1038, 1217, 1967
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 1673, 1730
HpyF3I CTNAG 3 cut(s) 730, 1618, 2099
HpySE526I ACGT 5 cut(s) 419, 792, 1038, 1217, 1967
Hsp92I GRCGYC 1 cut(s) 1567
Kpn2I TCCGGA 1 cut(s) 1408
Ksp22I TGATCA 3 cut(s) 327, 985, 1494
LmnI GCTCC 5 cut(s) 33, 79, 752, 1154, 1411
Lsp1109I GCAGC 3 cut(s) 77, 841, 1766
LweI GCATC 5 cut(s) 209, 757, 981, 1074, 1654
MaeI CTAG 5 cut(s) 821, 1160, 1488, 1700, 2070
MaeII ACGT 5 cut(s) 419, 792, 1038, 1217, 1967
MaeIII GTNAC 5 cut(s) 257, 683, 718, 2074, 2117
MfeI CAATTG 1 cut(s) 2040
MflI RGATCY 2 cut(s) 1546, 1708
MhlI GDGCHC 2 cut(s) 1147, 1159
MlyI GAGTC 3 cut(s) 674, 1816, 2094
MmeI TCCRAC 1 cut(s) 1899
Mph1103I ATGCAT 2 cut(s) 174, 1659
MroI TCCGGA 1 cut(s) 1408
MroXI GAANNNNTTC 2 cut(s) 1052, 1296
MseI TTAA 8 cut(s) 38, 186, 434, 936, 1235, 1347, 1572, 1932
MslI CAYNNNNRTG 6 cut(s) 50, 463, 486, 1220, 1662, 2212
MspI CCGG 4 cut(s) 209, 1051, 1409, 1875
MspR9I CCNGG 6 cut(s) 209, 278, 670, 1318, 1827, 1876
MunI CAATTG 1 cut(s) 2040
Mva1269I GAATGC 4 cut(s) 628, 838, 1128, 1659
MvaI CCWGG 4 cut(s) 278, 670, 1318, 1827
MvnI CGCG 1 cut(s) 1782
MwoI GCNNNNNNNGC 3 cut(s) 71, 1673, 1730
NciI CCSGG 2 cut(s) 209, 1876
NcoI CCATGG 2 cut(s) 150, 1119
NdeI CATATG 1 cut(s) 543
NlaIV GGNNCC 6 cut(s) 29, 75, 207, 479, 1710, 2186
NmuCI GTSAC 5 cut(s) 257, 683, 718, 2074, 2117
NsiI ATGCAT 2 cut(s) 174, 1659
NspI RCATGY 6 cut(s) 176, 850, 1246, 1378, 1446, 1603
OliI CACNNNNGTG 1 cut(s) 1220
PaeI GCATGC 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 972
PagI TCATGA 3 cut(s) 45, 1861, 2088
PciI ACATGT 3 cut(s) 846, 1242, 1374
PcsI WCGNNNNNNNCGW 1 cut(s) 1564
PctI GAATGC 4 cut(s) 628, 838, 1128, 1659
PdmI GAANNNNTTC 2 cut(s) 1052, 1296
PfeI GAWTC 4 cut(s) 509, 1364, 1776, 2103
PflMI CCANNNNNTGG 1 cut(s) 362
PfoI TCCNGGA 1 cut(s) 668
PinAI ACCGGT 1 cut(s) 1050
PkrI GCNGC 3 cut(s) 67, 856, 1756
PleI GAGTC 3 cut(s) 673, 1816, 2093
PpsI GAGTC 3 cut(s) 673, 1816, 2093
Ppu21I YACGTR 1 cut(s) 1039
PpuMI RGGWCCY 1 cut(s) 2066
PscI ACATGT 3 cut(s) 846, 1242, 1374
PshBI ATTAAT 1 cut(s) 1347
PsiI TTATAA 1 cut(s) 2019
Psp5II RGGWCCY 1 cut(s) 2066
Psp6I CCWGG 4 cut(s) 276, 668, 1316, 1825
PspFI CCCAGC 1 cut(s) 770
PspGI CCWGG 4 cut(s) 276, 668, 1316, 1825
PspN4I GGNNCC 6 cut(s) 29, 75, 207, 479, 1710, 2186
PspPI GGNCC 3 cut(s) 154, 205, 2066
PspPPI RGGWCCY 1 cut(s) 2066
PstI CTGCAG 2 cut(s) 1402, 1951
PstNI CAGNNNCTG 1 cut(s) 2106
PsuI RGATCY 2 cut(s) 1546, 1708
RsaI GTAC 7 cut(s) 91, 244, 548, 641, 735, 1037, 1447
RsaNI GTAC 7 cut(s) 90, 243, 547, 640, 734, 1036, 1446
RseI CAYNNNNRTG 6 cut(s) 50, 463, 486, 1220, 1662, 2212
SaqAI TTAA 8 cut(s) 38, 186, 434, 936, 1235, 1347, 1572, 1932
SatI GCNGC 3 cut(s) 66, 855, 1755
Sau96I GGNCC 3 cut(s) 154, 205, 2066
ScaI AGTACT 1 cut(s) 735
SchI GAGTC 3 cut(s) 674, 1816, 2094
ScrFI CCNGG 6 cut(s) 209, 278, 670, 1318, 1827, 1876
SduI GDGCHC 2 cut(s) 1147, 1159
SfaNI GCATC 5 cut(s) 209, 757, 981, 1074, 1654
SfcI CTRYAG 3 cut(s) 337, 1398, 1947
Sfr274I CTCGAG 1 cut(s) 972
SinI GGWCC 3 cut(s) 154, 205, 2066
SlaI CTCGAG 1 cut(s) 972
SmiMI CAYNNNNRTG 6 cut(s) 50, 463, 486, 1220, 1662, 2212
SmlI CTYRAG 2 cut(s) 881, 972
SmoI CTYRAG 2 cut(s) 881, 972
SnaBI TACGTA 1 cut(s) 1039
SphI GCATGC 1 cut(s) 176
SsiI CCGC 2 cut(s) 388, 1780
SspMI CTAG 5 cut(s) 821, 1160, 1488, 1700, 2070
StyD4I CCNGG 6 cut(s) 207, 276, 668, 1316, 1825, 1874
StyI CCWWGG 4 cut(s) 150, 1119, 2069, 2142
TaaI ACNGT 4 cut(s) 1358, 1522, 1721, 2027
TaiI ACGT 5 cut(s) 422, 795, 1041, 1220, 1970
TaqI TCGA 7 cut(s) 507, 588, 660, 810, 973, 1464, 1558
TatI WGTACW 3 cut(s) 546, 733, 1445
TfiI GAWTC 4 cut(s) 509, 1364, 1776, 2103
Tru1I TTAA 8 cut(s) 38, 186, 434, 936, 1235, 1347, 1572, 1932
Tru9I TTAA 8 cut(s) 38, 186, 434, 936, 1235, 1347, 1572, 1932
TscAI CASTG 3 cut(s) 604, 1726, 2032
TseFI GTSAC 5 cut(s) 257, 683, 718, 2074, 2117
TseI GCWGC 3 cut(s) 65, 854, 1754
Tsp45I GTSAC 5 cut(s) 257, 683, 718, 2074, 2117
TspGWI ACGGA 2 cut(s) 671, 1067
TspRI CASTG 3 cut(s) 604, 1726, 2032
Van91I CCANNNNNTGG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 1143
VpaK11BI GGWCC 3 cut(s) 154, 205, 2066
VspI ATTAAT 1 cut(s) 1347
XapI RAATTY 3 cut(s) 251, 291, 1310
XceI RCATGY 6 cut(s) 176, 850, 1246, 1378, 1446, 1603
XcmI CCANNNNNNNNNTGG 1 cut(s) 2198
XhoI CTCGAG 1 cut(s) 972
XmaJI CCTAGG 1 cut(s) 2069
XmiI GTMKAC 1 cut(s) 1115
XmnI GAANNNNTTC 2 cut(s) 1052, 1296
XspI CTAG 5 cut(s) 821, 1160, 1488, 1700, 2070
ZrmI AGTACT 1 cut(s) 735
Zsp2I ATGCAT 2 cut(s) 174, 1659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.