Rh2DG502000

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
72162273 .. 72187568
25296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG502000.1

Sequence Viewer

Length: 501 bp
ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGAAGATTCCTCGGCTTACATTTACAGCACGAACAACTTTGTGGGAAGGCAGACATGGGAGTTTGATCCTGATGCAGGGACTGCTGAAGAGCGAGCTGAGGTTGAAGCAGCTCGTCTTCATTTCTACAACAACCGCCATCAGGTTAAGCCCAGTGGTGACCTTCTTTGGAGATTGCAGTTCCTAAGGGAGAAGCAGTTCAAACAGACAATTCCTCCAATAAAAATTGAAGATGGCGAGGTTATCACATATGAAAAAACCACAGATGCATTGAGAAGGTCTGTCCACTTCTTCTCAGCGCTGCAAGCAAGCGATGGCCATTGGCCTGCGGAAAATGCTGGCCCTTTATTTTTCCTTCCTCCTATGGTCAAGAAATTTGTGCTCAAAACAAGGCATGAAGGAGATATGGAGCAACGCGGTTTGGCTTTGGAGTATAGTTGCGCTGATAGCAACACTGGCACTCACGCAGCTTAA

Protein Analysis

166

Amino Acids

18.93

Weight (kDa)

5.87

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 444
AciI CCGC 3 cut(s) 163, 356, 444
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 1 cut(s) 401
AcuI CTGAAG 1 cut(s) 135
AfeI AGCGCT 1 cut(s) 327
AfiI CCNNNNNNNGG 2 cut(s) 104, 169
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 3 cut(s) 134, 229, 257
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 4 cut(s) 10, 125, 140, 497
AluI AGCT 4 cut(s) 10, 125, 140, 497
Alw21I GWGCWC 1 cut(s) 411
AlwI GGATC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 110
Aor51HI AGCGCT 1 cut(s) 327
AoxI GGCC 3 cut(s) 343, 350, 367
ApeKI GCWGC 3 cut(s) 137, 328, 494
ApoI RAATTY 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 2 cut(s) 328, 470
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 212
BalI TGGCCA 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 411
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 149, 315
BccI CCATC 3 cut(s) 174, 254, 335
BfoI RGCGCY 1 cut(s) 329
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 3 cut(s) 138, 329, 495
BlsI GCNGC 3 cut(s) 139, 330, 496
BmgT120I GGNCC 1 cut(s) 368
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 91, 283
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 4 cut(s) 209, 226, 239, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 169
Bse1I ACTGG 2 cut(s) 180, 487
Bse21I CCTNAGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 104, 169
BseMII CTCAG 2 cut(s) 117, 336
BseNI ACTGG 2 cut(s) 180, 487
BseXI GCAGC 2 cut(s) 149, 315
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 3 cut(s) 345, 352, 369
BsiHKAI GWGCWC 1 cut(s) 411
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 104, 169
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 345, 352, 369
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 3 cut(s) 163, 356, 444
BspANI GGCC 3 cut(s) 345, 352, 369
BspCNI CTCAG 2 cut(s) 118, 335
BspFNI CGCG 1 cut(s) 444
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 180, 487
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 5 cut(s) 123, 333, 337, 354, 367
BstDEI CTNAG 3 cut(s) 126, 212, 322
BstEII GGTNACC 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 2 cut(s) 328, 470
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 5 cut(s) 110, 332, 362, 474, 483
BstPI GGTNACC 1 cut(s) 185
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 149, 315
BstV2I GAAGAC 1 cut(s) 137
Bsu36I CCTNAGG 1 cut(s) 212
BsuRI GGCC 3 cut(s) 345, 352, 369
BtgZI GCGATG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 187, 480
Cac8I GCNNGC 5 cut(s) 123, 333, 337, 354, 367
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 2 cut(s) 328, 470
Cfr13I GGNCC 1 cut(s) 368
CviAII CATG 2 cut(s) 84, 422
DdeI CTNAG 3 cut(s) 126, 212, 322
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco47III AGCGCT 1 cut(s) 327
Eco57I CTGAAG 1 cut(s) 135
Eco81I CCTNAGG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoO65I GGTNACC 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 298
FaeI CATG 2 cut(s) 87, 425
FaiI YATR 7 cut(s) 85, 277, 279, 392, 423, 434, 462
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 83, 421
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 138, 329, 495
Fsp4HI GCNGC 3 cut(s) 138, 329, 495
GlaI GCGC 2 cut(s) 327, 469
GluI GCNGC 3 cut(s) 138, 329, 495
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 3 cut(s) 345, 352, 369
HhaI GCGC 2 cut(s) 328, 470
Hin1II CATG 2 cut(s) 87, 425
Hin6I GCGC 2 cut(s) 326, 468
HinP1I GCGC 2 cut(s) 326, 468
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 313
Hpy188III TCNNGA 2 cut(s) 98, 397
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 6 cut(s) 17, 69, 200, 297, 392, 419
HpyCH4V TGCA 5 cut(s) 20, 104, 205, 296, 331
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 332, 362, 474, 483
HpyF3I CTNAG 3 cut(s) 126, 212, 322
Hsp92II CATG 2 cut(s) 87, 425
HspAI GCGC 2 cut(s) 326, 468
Kzo9I GATC 1 cut(s) 94
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 7 cut(s) 90, 111, 155, 193, 351, 366, 468
Lsp1109I GCAGC 2 cut(s) 149, 315
LweI GCATC 2 cut(s) 91, 283
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 5 cut(s) 44, 128, 137, 269, 310
MhlI GDGCHC 1 cut(s) 411
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 3 cut(s) 237, 252, 401
MluNI TGGCCA 1 cut(s) 345
MnlI CCTC 5 cut(s) 49, 121, 252, 259, 396
Mox20I TGGCCA 1 cut(s) 345
Mph1103I ATGCAT 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 224
MscI TGGCCA 1 cut(s) 345
MseI TTAA 3 cut(s) 12, 174, 499
Msp20I TGGCCA 1 cut(s) 345
MspCI CTTAAG 1 cut(s) 11
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 5 cut(s) 110, 332, 362, 474, 483
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 87, 425
NmeAIII GCCGAG 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 185
NsiI ATGCAT 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 3 cut(s) 139, 330, 496
PspEI GGTNACC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 368
PstNI CAGNNNCTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 12, 174, 499
SatI GCNGC 3 cut(s) 138, 329, 495
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 1 cut(s) 368
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 2 cut(s) 91, 283
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 3 cut(s) 237, 252, 401
SsiI CCGC 3 cut(s) 163, 356, 444
TasI AATT 3 cut(s) 237, 252, 401
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 3 cut(s) 12, 174, 499
Tru9I TTAA 3 cut(s) 12, 174, 499
TscAI CASTG 2 cut(s) 187, 487
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 3 cut(s) 137, 328, 494
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 137, 294, 438
TspRI CASTG 2 cut(s) 187, 487
Vha464I CTTAAG 1 cut(s) 11
XagI CCTNNNNNAGG 1 cut(s) 102
XapI RAATTY 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.