Rh2CG453200

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
61626565 .. 61690612
64048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG453200.1

Sequence Viewer

Length: 492 bp
ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGATTCCTCAGCTTACATTTACAGCACAAACAACTTTGTCGGAAGGCAGACATGGGAGTTTGATTCGGATGCAGGAACTCCTGAAGAGCGAGCTGAGGTTGAAGAGGCCCGTCTTCATTTCTACAACAACCGCTATCAGGTCAAGCCCAGTGGTGACATTCTTTGGCGTATGCAGGAAAATTCAAACCAGCAATTGAATAACATAAAGAACACCAAAACCAAAATTGAAACTCAAACAATGTGGAAGCTCAAGGTTGCAGAAGGTGGGGATTCCTCAGCTTACATTTACAGCACAAACAACTTTGTCGGAAGGCAGACATGGGAGTTTGATCCCGACGCAGGAACTCCTGAAGAGCGAGCTGAGGTTGAAGAGGCCCGTCTTCATTTCTACAACAACCGCTATCAGGTCAAGGCCAGTGGTGACCTTCTTTGGCGTATGCAGGCCTATCAAGATATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

163

Amino Acids

19.05

Weight (kDa)

5.03

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 160, 427
AclWI GGATC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 2 cut(s) 132, 399
AfiI CCNNNNNNNGG 3 cut(s) 166, 368, 433
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 5 cut(s) 131, 213, 226, 257, 398
AluBI AGCT 6 cut(s) 10, 41, 122, 277, 308, 389
AluI AGCT 6 cut(s) 10, 41, 122, 277, 308, 389
AlwI GGATC 1 cut(s) 353
AoxI GGCC 4 cut(s) 135, 402, 441, 471
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 136, 403
AsuHPI GGTGA 2 cut(s) 194, 461
BbsI GAAGAC 2 cut(s) 134, 401
BbvCI CCTCAGC 4 cut(s) 37, 123, 304, 390
BfrI CTTAAG 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 136, 403
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 2 cut(s) 134, 401
Bpu10I CCTNAGC 4 cut(s) 37, 123, 304, 390
BpuEI CTTGAG 1 cut(s) 263
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 368, 433
Bse1I ACTGG 2 cut(s) 177, 444
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 3 cut(s) 166, 368, 433
BseMII CTCAG 4 cut(s) 51, 114, 318, 381
BseNI ACTGG 2 cut(s) 177, 444
BshFI GGCC 4 cut(s) 137, 404, 443, 473
BslI CCNNNNNNNGG 3 cut(s) 166, 368, 433
BsnI GGCC 4 cut(s) 137, 404, 443, 473
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 2 cut(s) 160, 427
BspANI GGCC 4 cut(s) 137, 404, 443, 473
BspCNI CTCAG 4 cut(s) 50, 115, 317, 382
BspPI GGATC 1 cut(s) 353
BspQI GCTCTTC 2 cut(s) 108, 375
BspTI CTTAAG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 177, 444
BssMI GATC 1 cut(s) 358
Bst6I CTCTTC 4 cut(s) 108, 126, 375, 393
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 120, 387, 471
BstDEI CTNAG 4 cut(s) 37, 123, 304, 390
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 361
BstMBI GATC 1 cut(s) 358
BstPI GGTNACC 1 cut(s) 449
BstV2I GAAGAC 2 cut(s) 134, 401
BsuRI GGCC 4 cut(s) 137, 404, 443, 473
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 184, 451
Cac8I GCNNGC 3 cut(s) 120, 387, 471
Cfr13I GGNCC 2 cut(s) 136, 403
CseI GACGC 1 cut(s) 374
CspCI CAANNNNNGTGG 6 cut(s) 160, 195, 251, 286, 427, 462
CviAII CATG 2 cut(s) 81, 348
DdeI CTNAG 4 cut(s) 37, 123, 304, 390
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eam1104I CTCTTC 4 cut(s) 108, 126, 375, 393
EarI CTCTTC 4 cut(s) 108, 126, 375, 393
Eco147I AGGCCT 1 cut(s) 473
Eco57I CTGAAG 2 cut(s) 132, 399
Eco91I GGTNACC 1 cut(s) 449
EcoO65I GGTNACC 1 cut(s) 449
FaeI CATG 2 cut(s) 84, 351
FaiI YATR 6 cut(s) 82, 200, 233, 349, 467, 485
FatI CATG 2 cut(s) 80, 347
FokI GGATG 1 cut(s) 110
HaeIII GGCC 4 cut(s) 137, 404, 443, 473
HgaI GACGC 1 cut(s) 374
Hin1II CATG 2 cut(s) 84, 351
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 32, 92, 299
HphI GGTGA 2 cut(s) 194, 461
Hpy188I TCNGA 3 cut(s) 71, 97, 338
Hpy188III TCNNGA 4 cut(s) 110, 362, 377, 479
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 5 cut(s) 17, 66, 284, 333, 464
HpyCH4V TGCA 5 cut(s) 20, 101, 202, 287, 469
HpyF3I CTNAG 4 cut(s) 37, 123, 304, 390
Hsp92II CATG 2 cut(s) 84, 351
Kzo9I GATC 1 cut(s) 358
LguI GCTCTTC 2 cut(s) 108, 375
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 2 cut(s) 182, 449
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 6 cut(s) 125, 134, 143, 392, 401, 410
MfeI CAATTG 1 cut(s) 221
MluCI AATT 3 cut(s) 208, 221, 252
MmeI TCCRAC 2 cut(s) 49, 316
MnlI CCTC 6 cut(s) 46, 118, 127, 313, 385, 394
MseI TTAA 1 cut(s) 12
MspCI CTTAAG 1 cut(s) 11
MunI CAATTG 1 cut(s) 221
NdeII GATC 1 cut(s) 358
NlaIII CATG 2 cut(s) 84, 351
NmuCI GTSAC 2 cut(s) 182, 449
PceI AGGCCT 1 cut(s) 473
PciSI GCTCTTC 2 cut(s) 108, 375
PfeI GAWTC 3 cut(s) 32, 92, 299
PspEI GGTNACC 1 cut(s) 449
PspPI GGNCC 2 cut(s) 136, 403
SapI GCTCTTC 2 cut(s) 108, 375
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 2 cut(s) 136, 403
SfaNI GCATC 1 cut(s) 88
SmlI CTYRAG 2 cut(s) 11, 278
SmoI CTYRAG 2 cut(s) 11, 278
Sse9I AATT 3 cut(s) 208, 221, 252
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 2 cut(s) 160, 427
StuI AGGCCT 1 cut(s) 473
TasI AATT 3 cut(s) 208, 221, 252
TfiI GAWTC 3 cut(s) 32, 92, 299
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 184, 451
TseFI GTSAC 2 cut(s) 182, 449
Tsp45I GTSAC 2 cut(s) 182, 449
TspDTI ATGAA 2 cut(s) 134, 401
TspRI CASTG 2 cut(s) 184, 451
Vha464I CTTAAG 1 cut(s) 11
XapI RAATTY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.