Rmu_sc0008411.1_g000030

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008411.1
OG0000173
Physical Location & Seq
Reverse (-)
127901 .. 128282
382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008411.1_g000030.1.cds

Sequence Viewer

Length: 231 bp
atgctaagagagagaaacttcaagcaagaaattcctccagtaagaattggggaaggtgatgacattacatttgatcaggccacagctgcctataggaggaatgctaccttctggaatgccttgcaatcaccccatggtcattggcctactgaaaatgctggtgtaatgagtttatacacaatgggatatctcaatgttgttttctctgctgagcataagaatgaaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

76

Amino Acids

8.74

Weight (kDa)

5.82

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
AoxI GGCC 2 cut(s) 78, 143
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AsuHPI GGTGA 2 cut(s) 68, 120
BbvI GCAGC 1 cut(s) 73
BclI TGATCA 1 cut(s) 73
BfaI CTAG 1 cut(s) 229
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 1 cut(s) 87
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 2 cut(s) 80, 145
BslI CCNNNNNNNGG 1 cut(s) 96
BsmI GAATGC 2 cut(s) 106, 121
BsnI GGCC 2 cut(s) 80, 145
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 210
Bsp19I CCATGG 1 cut(s) 133
BspANI GGCC 2 cut(s) 80, 145
BspCNI CTCAG 1 cut(s) 202
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 5, 210
BstDSI CCRYGG 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 94
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 2 cut(s) 80, 145
BtgI CCRYGG 1 cut(s) 133
CviAII CATG 1 cut(s) 134
CviJI RGCY 3 cut(s) 80, 86, 145
CviKI_1 RGCY 3 cut(s) 80, 86, 145
DdeI CTNAG 2 cut(s) 5, 210
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 133
Eco32I GATATC 1 cut(s) 188
EcoNI CCTNNNNNAGG 1 cut(s) 94
EcoRV GATATC 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 137
FaiI YATR 4 cut(s) 93, 135, 175, 216
FatI CATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 229
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 2 cut(s) 80, 145
Hin1II CATG 1 cut(s) 137
HphI GGTGA 2 cut(s) 68, 120
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 47, 118
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 5, 210
Hsp92II CATG 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 51, 62, 97, 144
Lsp1109I GCAGC 1 cut(s) 73
MaeI CTAG 1 cut(s) 229
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MluCI AATT 2 cut(s) 30, 45
MnlI CCTC 2 cut(s) 45, 90
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 86
Mva1269I GAATGC 2 cut(s) 106, 121
MwoI GCNNNNNNNGC 1 cut(s) 86
NcoI CCATGG 1 cut(s) 133
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 137
PctI GAATGC 2 cut(s) 106, 121
PkrI GCNGC 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 219
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 73
SetI ASST 3 cut(s) 58, 88, 110
SfcI CTRYAG 1 cut(s) 91
SgeI CNNG 8 cut(s) 34, 38, 50, 89, 124, 133, 146, 171
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 2 cut(s) 30, 45
SspMI CTAG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 133
TasI AATT 2 cut(s) 30, 45
TseI GCWGC 1 cut(s) 86
XagI CCTNNNNNAGG 1 cut(s) 94
XapI RAATTY 1 cut(s) 30
XspI CTAG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.