Rw2G038010

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000173
Physical Location & Seq
Reverse (-)
62779586 .. 62783274
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038010.1

Sequence Viewer

Length: 456 bp
ATGTGGAGGATTGAGTATGGAAACGGTGCAAATGACCCTCATTTATTCAGCACAAACAACTTGAATGGGAGGCAGACATGGAAGTTTGACCCAAATGCAGGCACACCAGAAGAGCGAGCAGAGGTTGAAGCCGCTCATGAGAATTACTATCAAAATTGGTTCAAGATCCAGCCCAGTAGTGATCTCCTTTGGCGTTTTCAGATGCTAAGAGAGAGAAACTTCAAGCAAGAAATTCCTCCAGTACGAATTGGGGAAGGTGATGACATTACATTTGATCAAGCCACAGCTGCCTATAGGAGGAATGCTACCTTCTGGAATGCCTTGCAATCACCCCATGGTCATTGGCCTGCTGAAAATGCTGGCGTAAATGTTTTCTGTCCTCCCTTGGTAATGAGTTTATACTCAATGGGATATCTCAATGTTGTTTTCTCTGCTGAGCATAAGAATGAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

151

Amino Acids

17.54

Weight (kDa)

5.48

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 134
AciI CCGC 1 cut(s) 132
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 231
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 98, 297
AgsI TTSAA 4 cut(s) 64, 128, 163, 223
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
AlwI GGATC 1 cut(s) 160
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 231
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AsuHPI GGTGA 2 cut(s) 269, 321
BbvI GCAGC 1 cut(s) 274
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 454
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 2 cut(s) 132, 288
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 2 cut(s) 133, 289
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 222
Bpu1102I GCTNAGC 1 cut(s) 435
BsaJI CCNNGG 2 cut(s) 334, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 297
Bse1I ACTGG 2 cut(s) 174, 239
BseDI CCNNGG 2 cut(s) 334, 384
BseLI CCNNNNNNNGG 2 cut(s) 98, 297
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 2 cut(s) 174, 239
BseXI GCAGC 1 cut(s) 274
BshFI GGCC 1 cut(s) 346
BslI CCNNNNNNNGG 2 cut(s) 98, 297
BsmI GAATGC 2 cut(s) 307, 322
BsnI GGCC 1 cut(s) 346
Bsp143I GATC 3 cut(s) 165, 181, 274
Bsp1720I GCTNAGC 1 cut(s) 435
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 1 cut(s) 427
BspHI TCATGA 1 cut(s) 136
BspPI GGATC 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 134
BsrI ACTGG 2 cut(s) 174, 239
BssECI CCNNGG 2 cut(s) 334, 384
BssMI GATC 3 cut(s) 165, 181, 274
BssT1I CCWWGG 2 cut(s) 334, 384
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 4 cut(s) 100, 117, 348, 361
BstDEI CTNAG 2 cut(s) 206, 435
BstDSI CCRYGG 1 cut(s) 334
BstENI CCTNNNNNAGG 1 cut(s) 295
BstKTI GATC 3 cut(s) 168, 184, 277
BstMBI GATC 3 cut(s) 165, 181, 274
BstMWI GCNNNNNNNGC 2 cut(s) 287, 356
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 1 cut(s) 346
BtgI CCRYGG 1 cut(s) 334
Cac8I GCNNGC 4 cut(s) 100, 117, 348, 361
CciI TCATGA 1 cut(s) 136
Csp6I GTAC 1 cut(s) 242
CviAII CATG 3 cut(s) 78, 137, 335
CviJI RGCY 5 cut(s) 131, 172, 281, 287, 346
CviKI_1 RGCY 5 cut(s) 131, 172, 281, 287, 346
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 206, 435
DpnI GATC 3 cut(s) 167, 183, 276
DpnII GATC 3 cut(s) 165, 181, 274
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 334, 384
Eco32I GATATC 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoRV GATATC 1 cut(s) 413
EcoT14I CCWWGG 2 cut(s) 334, 384
ErhI CCWWGG 2 cut(s) 334, 384
FaeI CATG 3 cut(s) 81, 140, 338
FaiI YATR 7 cut(s) 18, 79, 138, 294, 336, 400, 441
FatI CATG 3 cut(s) 77, 136, 334
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 132, 288
Fsp4HI GCNGC 2 cut(s) 132, 288
FspBI CTAG 1 cut(s) 454
GluI GCNGC 2 cut(s) 132, 288
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 1 cut(s) 346
Hin1II CATG 3 cut(s) 81, 140, 338
HphI GGTGA 2 cut(s) 269, 321
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 3 cut(s) 137, 163, 313
HpyAV CCTTC 2 cut(s) 248, 319
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 29, 98, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 356
HpyF3I CTNAG 2 cut(s) 206, 435
Hsp92II CATG 3 cut(s) 81, 140, 338
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 165, 181, 274
LguI GCTCTTC 1 cut(s) 105
LpnPI CCDG 8 cut(s) 84, 120, 182, 187, 252, 298, 345, 360
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 454
MalI GATC 3 cut(s) 167, 183, 276
MbiI CCGCTC 1 cut(s) 134
MboI GATC 3 cut(s) 165, 181, 274
MboII GAAGA 1 cut(s) 122
MflI RGATCY 1 cut(s) 165
MluCI AATT 4 cut(s) 142, 154, 231, 246
MnlI CCTC 6 cut(s) 48, 63, 115, 246, 291, 390
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 287
Mva1269I GAATGC 2 cut(s) 307, 322
MwoI GCNNNNNNNGC 2 cut(s) 287, 356
NcoI CCATGG 1 cut(s) 334
NdeII GATC 3 cut(s) 165, 181, 274
NlaIII CATG 3 cut(s) 81, 140, 338
PagI TCATGA 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 2 cut(s) 307, 322
PkrI GCNGC 2 cut(s) 133, 289
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 105
SatI GCNGC 2 cut(s) 132, 288
Sau3AI GATC 3 cut(s) 165, 181, 274
SetI ASST 4 cut(s) 126, 259, 289, 311
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 4 cut(s) 142, 154, 231, 246
SsiI CCGC 1 cut(s) 132
SspMI CTAG 1 cut(s) 454
StyI CCWWGG 2 cut(s) 334, 384
TaaI ACNGT 1 cut(s) 26
TasI AATT 4 cut(s) 142, 154, 231, 246
TauI GCSGC 1 cut(s) 134
TseI GCWGC 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 295
XapI RAATTY 1 cut(s) 231
XspI CTAG 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.