Rmu_sc0006758.1_g000002

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006758.1
OG0000173
Physical Location & Seq
Reverse (-)
4831 .. 8370
3540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006758.1_g000002.1.cds

Sequence Viewer

Length: 699 bp
atgtggaagcttaggtttggaaatgaaggtgcaaataatgacccttacagtccttacttgtttagcacaaacaacttctatgggagacaaacatgggagtttgactcggctgccggcacacctgaagagctagcagaggtcgaagaagttcgactaagtttttacaacaatcgtcaccaggtccaggcttgtagtgacctcctctgccgaatgcaggtacttctgggagagaaaaagttcaaacaaaagattccccaagtaaaggtggaggatggtgaggactgtacatatgaaaaggccaccgctgcattcaaaagggcagctaccttctactctgccttgcaatcacctcacggccattggcctgctgcaagtgtcggtcccatgttttatattccttccttggtcataccgctttatattatggggcatcttagtaaggtgttctctgcagagcattataaggaaatgcttagatatatatactgtcatcagaacgaggatggtgggtggggattacacatagagggccctagtatgatgtattgtacacttctgaactacatttgcatgcgtctacttggagaaggacctgacggtggtttaaacaacgcttgtgcaagagcacgcaagtggattcttgatcatggtggtgcaacacattcatcatcctggggaaagacttttatggcagtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

232

Amino Acids

26.31

Weight (kDa)

6.5

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
Acc36I ACCTGC 1 cut(s) 205
AccI GTMKAC 1 cut(s) 577
AciI CCGC 2 cut(s) 303, 413
AcoI YGGCCR 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 3 cut(s) 219, 286, 550
AfiI CCNNNNNNNGG 4 cut(s) 184, 214, 262, 599
AgsI TTSAA 2 cut(s) 241, 313
AjnI CCWGG 3 cut(s) 177, 183, 671
AleI CACNNNNGTG 1 cut(s) 631
AluBI AGCT 3 cut(s) 10, 130, 323
AluI AGCT 3 cut(s) 10, 130, 323
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 1 cut(s) 79
AoxI GGCC 4 cut(s) 297, 355, 362, 529
ApaI GGGCCC 1 cut(s) 533
ApeKI GCWGC 4 cut(s) 110, 305, 320, 368
Asp700I GAANNNNTTC 2 cut(s) 147, 236
AspS9I GGNCC 5 cut(s) 181, 380, 529, 530, 590
AsuHPI GGTGA 3 cut(s) 167, 287, 339
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 3 cut(s) 181, 380, 590
BaeGI GKGCMC 1 cut(s) 533
BanII GRGCYC 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 4 cut(s) 97, 292, 332, 355
BccI CCATC 2 cut(s) 266, 497
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 3 cut(s) 179, 185, 673
BclI TGATCA 1 cut(s) 643
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 2 cut(s) 131, 534
BfmI CTRYAG 1 cut(s) 450
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 4 cut(s) 111, 306, 321, 369
BlsI GCNGC 4 cut(s) 112, 307, 322, 370
Bme1390I CCNGG 3 cut(s) 179, 185, 673
Bme18I GGWCC 3 cut(s) 181, 380, 590
BmgT120I GGNCC 5 cut(s) 181, 380, 529, 530, 590
BmiI GGNNCC 2 cut(s) 382, 531
BmrFI CCNGG 3 cut(s) 179, 185, 673
BmsI GCATC 1 cut(s) 439
BmtI GCTAGC 1 cut(s) 134
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu10I CCTNAGC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 402, 672
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 214, 262, 599
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 3 cut(s) 179, 185, 673
BseDI CCNNGG 2 cut(s) 402, 672
BseGI GGATG 3 cut(s) 277, 508, 668
BseLI CCNNNNNNNGG 4 cut(s) 184, 214, 262, 599
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 4 cut(s) 97, 292, 332, 355
BshFI GGCC 4 cut(s) 299, 357, 364, 531
BsiHKAI GWGCWC 1 cut(s) 628
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 4 cut(s) 184, 214, 262, 599
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 366
BsmI GAATGC 2 cut(s) 216, 308
BsnI GGCC 4 cut(s) 299, 357, 364, 531
Bsp120I GGGCCC 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 533, 628
Bsp1407I TGTACA 2 cut(s) 284, 548
Bsp143I GATC 1 cut(s) 643
BspACI CCGC 2 cut(s) 303, 413
BspANI GGCC 4 cut(s) 299, 357, 364, 531
BspLI GGNNCC 2 cut(s) 382, 531
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 205
BspOI GCTAGC 1 cut(s) 134
BspQI GCTCTTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 113
BsrGI TGTACA 2 cut(s) 284, 548
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 402, 672
BssMI GATC 1 cut(s) 643
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 3 cut(s) 179, 185, 673
Bst4CI ACNGT 4 cut(s) 50, 284, 488, 599
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 2 cut(s) 284, 548
BstC8I GCNNGC 5 cut(s) 115, 132, 366, 572, 628
BstDEI CTNAG 4 cut(s) 11, 155, 434, 473
BstF5I GGATG 3 cut(s) 277, 508, 668
BstKTI GATC 1 cut(s) 646
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 643
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 3 cut(s) 179, 185, 673
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 3 cut(s) 177, 183, 671
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 4 cut(s) 97, 292, 332, 355
BsuRI GGCC 4 cut(s) 299, 357, 364, 531
BtsCI GGATG 3 cut(s) 277, 508, 668
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 5 cut(s) 115, 132, 366, 572, 628
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 5 cut(s) 181, 380, 529, 530, 590
CseI GACGC 1 cut(s) 563
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 3 cut(s) 218, 285, 549
CviAII CATG 4 cut(s) 93, 385, 571, 647
CviJI RGCY 9 cut(s) 10, 110, 130, 188, 299, 323, 357, 364, 531
CviKI_1 RGCY 9 cut(s) 10, 110, 130, 188, 299, 323, 357, 364, 531
CviQI GTAC 3 cut(s) 218, 285, 549
DdeI CTNAG 4 cut(s) 11, 155, 434, 473
DpnI GATC 1 cut(s) 645
DpnII GATC 1 cut(s) 643
DraI TTTAAA 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 181, 380, 590
Eco57I CTGAAG 1 cut(s) 144
EcoO109I RGGNCCY 3 cut(s) 529, 530, 590
EcoRII CCWGG 3 cut(s) 177, 183, 671
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 4 cut(s) 96, 388, 574, 650
FaqI GGGAC 1 cut(s) 366
FatI CATG 4 cut(s) 92, 384, 570, 646
FauNDI CATATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 643
FblI GTMKAC 1 cut(s) 577
Fnu4HI GCNGC 4 cut(s) 111, 306, 321, 369
FokI GGATG 3 cut(s) 284, 515, 655
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 4 cut(s) 111, 306, 321, 369
FspBI CTAG 2 cut(s) 131, 534
GluI GCNGC 4 cut(s) 111, 306, 321, 369
HaeIII GGCC 4 cut(s) 299, 357, 364, 531
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 563
Hin1II CATG 4 cut(s) 96, 388, 574, 650
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 104, 250, 637
HpaII CCGG 1 cut(s) 114
HphI GGTGA 3 cut(s) 167, 287, 339
Hpy166II GTNNAC 2 cut(s) 551, 578
Hpy188I TCNGA 2 cut(s) 495, 558
Hpy188III TCNNGA 1 cut(s) 641
Hpy8I GTNNAC 2 cut(s) 551, 578
HpyAV CCTTC 4 cut(s) 20, 337, 408, 581
HpyCH4III ACNGT 4 cut(s) 50, 284, 488, 599
HpyCH4V TGCA 9 cut(s) 32, 214, 308, 343, 371, 452, 570, 620, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 4 cut(s) 11, 155, 434, 473
Hsp92II CATG 4 cut(s) 96, 388, 574, 650
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 1 cut(s) 643
LguI GCTCTTC 1 cut(s) 120
Lsp1109I GCAGC 4 cut(s) 97, 292, 332, 355
LweI GCATC 1 cut(s) 439
MabI ACCWGGT 1 cut(s) 177
MaeI CTAG 2 cut(s) 131, 534
MaeIII GTNAC 2 cut(s) 173, 194
MalI GATC 1 cut(s) 645
MboI GATC 1 cut(s) 643
MboII GAAGA 2 cut(s) 137, 155
MhlI GDGCHC 2 cut(s) 533, 628
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 8 cut(s) 130, 209, 212, 262, 271, 360, 493, 520
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 2 cut(s) 147, 236
MseI TTAA 1 cut(s) 605
MslI CAYNNNNRTG 3 cut(s) 569, 631, 651
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 3 cut(s) 179, 185, 673
MssI GTTTAAAC 1 cut(s) 606
Mva1269I GAATGC 2 cut(s) 216, 308
MvaI CCWGG 3 cut(s) 179, 185, 673
MwoI GCNNNNNNNGC 1 cut(s) 305
NaeI GCCGGC 1 cut(s) 115
NdeI CATATG 1 cut(s) 289
NdeII GATC 1 cut(s) 643
NgoMIV GCCGGC 1 cut(s) 113
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 4 cut(s) 96, 388, 574, 650
NlaIV GGNNCC 2 cut(s) 382, 531
NmeAIII GCCGAG 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 173, 194
NspI RCATGY 1 cut(s) 574
OliI CACNNNNGTG 1 cut(s) 631
PaeI GCATGC 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 2 cut(s) 216, 308
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 2 cut(s) 147, 236
PfeI GAWTC 2 cut(s) 250, 637
PkrI GCNGC 4 cut(s) 112, 307, 322, 370
PleI GAGTC 1 cut(s) 98
PmeI GTTTAAAC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 590
PsiI TTATAA 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 3 cut(s) 177, 183, 671
PspGI CCWGG 3 cut(s) 177, 183, 671
PspN4I GGNNCC 2 cut(s) 382, 531
PspOMI GGGCCC 1 cut(s) 529
PspPI GGNCC 5 cut(s) 181, 380, 529, 530, 590
PspPPI RGGWCCY 1 cut(s) 590
PstI CTGCAG 1 cut(s) 454
RsaI GTAC 3 cut(s) 219, 286, 550
RsaNI GTAC 3 cut(s) 218, 285, 549
RseI CAYNNNNRTG 3 cut(s) 569, 631, 651
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 4 cut(s) 111, 306, 321, 369
Sau3AI GATC 1 cut(s) 643
Sau96I GGNCC 5 cut(s) 181, 380, 529, 530, 590
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 3 cut(s) 179, 185, 673
SduI GDGCHC 2 cut(s) 533, 628
SexAI ACCWGGT 1 cut(s) 177
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 3 cut(s) 181, 380, 590
SmiMI CAYNNNNRTG 3 cut(s) 569, 631, 651
SphI GCATGC 1 cut(s) 574
SsiI CCGC 2 cut(s) 303, 413
SspMI CTAG 2 cut(s) 131, 534
StyD4I CCNGG 3 cut(s) 177, 183, 671
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 4 cut(s) 50, 284, 488, 599
TaqI TCGA 2 cut(s) 141, 151
TaqII GACCGA 1 cut(s) 368
TatI WGTACW 2 cut(s) 284, 548
TfiI GAWTC 2 cut(s) 250, 637
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TseFI GTSAC 2 cut(s) 173, 194
TseI GCWGC 4 cut(s) 110, 305, 320, 368
Tsp45I GTSAC 2 cut(s) 173, 194
TspDTI ATGAA 3 cut(s) 39, 306, 654
VpaK11BI GGWCC 3 cut(s) 181, 380, 590
XceI RCATGY 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 577
XmnI GAANNNNTTC 2 cut(s) 147, 236
XspI CTAG 2 cut(s) 131, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.