Rh2AG467100

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
68765437 .. 68772098
6662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG467100.1

Sequence Viewer

Length: 411 bp
ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGATTCCTTAGCTTACATTTACAGCACAAACAACTTTGTCGGAAGGCAGACATGGGAGTTTGATTCGGATGCAGGAACTCCTGAAGAGCGAGCTGAGGTTGAAGAGGCCCGTCTTCATTACTACAACAACCGCTATCAGGTCAAGCCCAGTGGTGACATTCTTTGGCGTATGCAGTTCCTAAGGGAGAAGAAGTTCAAACAGACAATTCCTCCAGTAAAAATTGAAGATGGCGAGGTTATCACACATGAAAAAACCACAGATGCACTGAGAAGGTCTGTCCACTTCTTCTCAGCGTTGCAGGCGAGCGATGGCCATTGGCCTGCGGAAAATGCTGGCCCTTTGTTTTTCCTTCCTCCCTTGGATGACAGAAAATTGGATTGA

Protein Analysis

136

Amino Acids

15.8

Weight (kDa)

5.59

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 160, 353
AcoI YGGCCR 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 166
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 3 cut(s) 131, 226, 254
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 3 cut(s) 10, 41, 122
AluI AGCT 3 cut(s) 10, 41, 122
AoxI GGCC 4 cut(s) 135, 340, 347, 364
Asp700I GAANNNNTTC 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 136, 365
AsuHPI GGTGA 1 cut(s) 194
AxyI CCTNAGG 1 cut(s) 209
BalI TGGCCA 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 123
BccI CCATC 2 cut(s) 251, 332
BfrI CTTAAG 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 136, 365
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 2 cut(s) 88, 280
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 225
Bpu10I CCTNAGC 2 cut(s) 37, 123
BsaJI CCNNGG 1 cut(s) 387
BsaXI ACNNNNNCTCC 4 cut(s) 206, 223, 236, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 2 cut(s) 177, 242
Bse21I CCTNAGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 2 cut(s) 103, 397
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 3 cut(s) 114, 287, 333
BseNI ACTGG 2 cut(s) 177, 242
BshFI GGCC 4 cut(s) 137, 342, 349, 366
BslI CCNNNNNNNGG 1 cut(s) 166
BsnI GGCC 4 cut(s) 137, 342, 349, 366
BspACI CCGC 2 cut(s) 160, 353
BspANI GGCC 4 cut(s) 137, 342, 349, 366
BspCNI CTCAG 3 cut(s) 115, 288, 332
BspQI GCTCTTC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 11
BsrI ACTGG 2 cut(s) 177, 242
BssECI CCNNGG 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 387
Bst6I CTCTTC 2 cut(s) 108, 126
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 5 cut(s) 120, 330, 334, 351, 364
BstDEI CTNAG 5 cut(s) 37, 123, 209, 296, 319
BstF5I GGATG 2 cut(s) 103, 397
BstMWI GCNNNNNNNGC 2 cut(s) 329, 359
BstV2I GAAGAC 1 cut(s) 134
Bsu36I CCTNAGG 1 cut(s) 209
BsuRI GGCC 4 cut(s) 137, 342, 349, 366
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 2 cut(s) 103, 397
BtsIMutI CAGTG 2 cut(s) 184, 293
Cac8I GCNNGC 5 cut(s) 120, 330, 334, 351, 364
Cfr13I GGNCC 2 cut(s) 136, 365
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 2 cut(s) 81, 275
CviJI RGCY 8 cut(s) 10, 41, 122, 137, 175, 342, 349, 366
CviKI_1 RGCY 8 cut(s) 10, 41, 122, 137, 175, 342, 349, 366
DdeI CTNAG 5 cut(s) 37, 123, 209, 296, 319
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 108, 126
EarI CTCTTC 2 cut(s) 108, 126
Eco130I CCWWGG 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 2 cut(s) 84, 278
FaiI YATR 3 cut(s) 82, 200, 276
FatI CATG 2 cut(s) 80, 274
FokI GGATG 2 cut(s) 110, 404
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 4 cut(s) 137, 342, 349, 366
Hin1II CATG 2 cut(s) 84, 278
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 32, 92
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 71, 97
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 4 cut(s) 17, 66, 294, 389
HpyCH4V TGCA 5 cut(s) 20, 101, 202, 293, 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 359
HpyF3I CTNAG 5 cut(s) 37, 123, 209, 296, 319
Hsp92II CATG 2 cut(s) 84, 278
LguI GCTCTTC 1 cut(s) 108
LpnPI CCDG 8 cut(s) 87, 123, 152, 190, 255, 314, 348, 363
LweI GCATC 2 cut(s) 88, 280
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 6 cut(s) 125, 134, 143, 229, 266, 307
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 3 cut(s) 234, 249, 401
MluNI TGGCCA 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 5 cut(s) 118, 127, 249, 256, 393
Mox20I TGGCCA 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 221
MscI TGGCCA 1 cut(s) 342
MseI TTAA 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 342
MspCI CTTAAG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 329, 359
NlaIII CATG 2 cut(s) 84, 278
NmuCI GTSAC 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 32, 92
PspPI GGNCC 2 cut(s) 136, 365
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 12
Sau96I GGNCC 2 cut(s) 136, 365
SetI ASST 9 cut(s) 12, 18, 28, 43, 124, 129, 171, 267, 305
SfaNI GCATC 2 cut(s) 88, 280
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 3 cut(s) 234, 249, 401
SsiI CCGC 2 cut(s) 160, 353
StyI CCWWGG 1 cut(s) 387
TasI AATT 3 cut(s) 234, 249, 401
TfiI GAWTC 2 cut(s) 32, 92
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 184, 300
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 134, 291
TspRI CASTG 2 cut(s) 184, 300
Vha464I CTTAAG 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.