Rh2AG465800

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000173
Physical Location & Seq
Forward (+)
68508908 .. 68520763
11856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG465800.1

Sequence Viewer

Length: 474 bp
ATGTGGAAGCTTAGGTTTGGAAATGAAGGTGCAAATAATGACCCTTACAGTCCTTACTTGTTTAGCACAAACAACTTCTATGGGAGACAAACATGGGAGTTTGACCCGGCTGCCGGCACACCTGAAGAGCGAGCAGAGGTCGAAGAAGTTCGACTAAGTTTTTACAACAATCGTCACCAGGTCCAGGCTTGTAGTGACCTCCTCTGCCGAATGCAGCTTCTGGGAGAGAAAAAGTTCAAACAAAAGATTCCCCAAGTAAAGGTGGAGGATGGTGAGGACTGTACATATGAAAAGGCCACCGCTGCATTCAAAAGGGCAGCTACCTTCTACTCTGCCTTGCAATCACCTCACGGCCATTGGCCTGCTGCAAGTGTCGGTCCCATGTTTTATATTCCTTCCTTGGGTATTACCCATGGAAGCTTCCCAGCAGTTTCAAAAGCAGAATACTTGTTGATGGTAAGCCTATGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

157

Amino Acids

17.87

Weight (kDa)

6.09

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 4 cut(s) 113, 184, 259, 401
AgsI TTSAA 3 cut(s) 238, 310, 435
AjnI CCWGG 2 cut(s) 177, 183
AluBI AGCT 4 cut(s) 10, 217, 320, 420
AluI AGCT 4 cut(s) 10, 217, 320, 420
Alw26I GTCTC 1 cut(s) 79
AlwNI CAGNNNCTG 1 cut(s) 220
AoxI GGCC 3 cut(s) 294, 352, 359
ApeKI GCWGC 5 cut(s) 110, 214, 302, 317, 365
Asp700I GAANNNNTTC 2 cut(s) 147, 233
AspS9I GGNCC 2 cut(s) 181, 377
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 3 cut(s) 167, 284, 336
AvaII GGWCC 2 cut(s) 181, 377
BbvI GCAGC 5 cut(s) 97, 226, 289, 329, 352
BccI CCATC 2 cut(s) 263, 448
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 2 cut(s) 179, 185
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 79
BisI GCNGC 5 cut(s) 111, 215, 303, 318, 366
BlsI GCNGC 5 cut(s) 112, 216, 304, 319, 367
Bme1390I CCNGG 3 cut(s) 107, 179, 185
Bme18I GGWCC 2 cut(s) 181, 377
BmgT120I GGNCC 2 cut(s) 181, 377
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 3 cut(s) 107, 179, 185
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 399, 412
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 184, 259, 401
Bse118I RCCGGY 1 cut(s) 113
BseBI CCWGG 2 cut(s) 179, 185
BseDI CCNNGG 2 cut(s) 399, 412
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 4 cut(s) 113, 184, 259, 401
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 5 cut(s) 97, 226, 289, 329, 352
BseYI CCCAGC 1 cut(s) 424
BshFI GGCC 3 cut(s) 296, 354, 361
BsiSI CCGG 2 cut(s) 107, 114
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 4 cut(s) 113, 184, 259, 401
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 363
BsmI GAATGC 2 cut(s) 216, 305
BsnI GGCC 3 cut(s) 296, 354, 361
Bsp1407I TGTACA 1 cut(s) 281
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 1 cut(s) 300
BspANI GGCC 3 cut(s) 296, 354, 361
BspLI GGNNCC 1 cut(s) 379
BspQI GCTCTTC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 399, 412
BssT1I CCWWGG 2 cut(s) 399, 412
Bst2UI CCWGG 2 cut(s) 179, 185
Bst4CI ACNGT 2 cut(s) 50, 281
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 281
BstC8I GCNNGC 3 cut(s) 115, 132, 363
BstDEI CTNAG 2 cut(s) 11, 155
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 2 cut(s) 179, 185
BstSCI CCNGG 3 cut(s) 105, 177, 183
BstV1I GCAGC 5 cut(s) 97, 226, 289, 329, 352
BsuRI GGCC 3 cut(s) 296, 354, 361
BtgI CCRYGG 1 cut(s) 412
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 3 cut(s) 115, 132, 363
CaiI CAGNNNCTG 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 181, 377
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 1 cut(s) 282
CviAII CATG 3 cut(s) 93, 382, 413
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 2 cut(s) 11, 155
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 399, 412
Eco47I GGWCC 2 cut(s) 181, 377
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 177, 183
EcoT14I CCWWGG 2 cut(s) 399, 412
ErhI CCWWGG 2 cut(s) 399, 412
FaeI CATG 3 cut(s) 96, 385, 416
FaiI YATR 8 cut(s) 81, 94, 286, 288, 383, 390, 414, 466
FaqI GGGAC 1 cut(s) 363
FatI CATG 3 cut(s) 92, 381, 412
FauNDI CATATG 1 cut(s) 286
Fnu4HI GCNGC 5 cut(s) 111, 215, 303, 318, 366
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 5 cut(s) 111, 215, 303, 318, 366
GluI GCNGC 5 cut(s) 111, 215, 303, 318, 366
GsaI CCCAGC 1 cut(s) 428
HaeIII GGCC 3 cut(s) 296, 354, 361
HapII CCGG 2 cut(s) 107, 114
Hin1II CATG 3 cut(s) 96, 385, 416
HindIII AAGCTT 2 cut(s) 8, 418
HinfI GANTC 1 cut(s) 247
HpaII CCGG 2 cut(s) 107, 114
HphI GGTGA 3 cut(s) 167, 284, 336
HpyAV CCTTC 3 cut(s) 20, 334, 405
HpyCH4III ACNGT 2 cut(s) 50, 281
HpyCH4V TGCA 5 cut(s) 32, 214, 305, 340, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 11, 155
Hsp92II CATG 3 cut(s) 96, 385, 416
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
LguI GCTCTTC 1 cut(s) 120
Lsp1109I GCAGC 5 cut(s) 97, 226, 289, 329, 352
MabI ACCWGGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 173, 194
MboII GAAGA 2 cut(s) 137, 155
MnlI CCTC 6 cut(s) 130, 209, 212, 259, 268, 357
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 2 cut(s) 147, 233
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 2 cut(s) 107, 114
MspR9I CCNGG 3 cut(s) 107, 179, 185
Mva1269I GAATGC 2 cut(s) 216, 305
MvaI CCWGG 2 cut(s) 179, 185
MwoI GCNNNNNNNGC 1 cut(s) 302
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 107
NcoI CCATGG 1 cut(s) 412
NdeI CATATG 1 cut(s) 286
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 3 cut(s) 96, 385, 416
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 173, 194
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 2 cut(s) 216, 305
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 2 cut(s) 147, 233
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 5 cut(s) 112, 216, 304, 319, 367
Psp6I CCWGG 2 cut(s) 177, 183
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 177, 183
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 181, 377
PstNI CAGNNNCTG 1 cut(s) 220
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 5 cut(s) 111, 215, 303, 318, 366
Sau96I GGNCC 2 cut(s) 181, 377
ScrFI CCNGG 3 cut(s) 107, 179, 185
SexAI ACCWGGT 1 cut(s) 177
SinI GGWCC 2 cut(s) 181, 377
SsiI CCGC 1 cut(s) 300
StyD4I CCNGG 3 cut(s) 105, 177, 183
StyI CCWWGG 2 cut(s) 399, 412
TaaI ACNGT 2 cut(s) 50, 281
TaqI TCGA 2 cut(s) 141, 151
TaqII GACCGA 1 cut(s) 365
TatI WGTACW 1 cut(s) 281
TfiI GAWTC 1 cut(s) 247
TseFI GTSAC 2 cut(s) 173, 194
TseI GCWGC 5 cut(s) 110, 214, 302, 317, 365
Tsp45I GTSAC 2 cut(s) 173, 194
TspDTI ATGAA 2 cut(s) 39, 303
VpaK11BI GGWCC 2 cut(s) 181, 377
XmnI GAANNNNTTC 2 cut(s) 147, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.