Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Reverse (-)

72463663 .. 72475173

Gene Structure 11511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG503100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTACTTGTCCACTGAAGCTAGCAATAATATATTAATTGCAGCATTCCATGAAATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGAAGATTCCTCGGCTTACATTTACAGCACGAACAACTTCGTGGGAAGGCAGACATGGAAGTTTGATCCCGATGTAGGAACTGCTAAAGAGCGAGCTGAGGTTGAAGCAGCTCGTCTTCATTTCTACAACAACCGCCATCAAGTTAAACCCAGTGGTGACCTTCTTTGGAGAATGCAGTTCCTAAGGGAGAAGCAGTTCAAACAGACAATTCCTCCAGTAAAAATTGAAGATGGCGAGGTTATCACACATGAAAAAACCACAGATGCACTGAGAAGGTCTGTCCACTTCTTCTCAGCGCTGCAGGCAAGCGATGGCCATTGGCCTGCGGAAAATGCTGGCCCTTTATTTTTCCTTCCTCCTTTGAAATTTTTGCTCAAAACAAGGCATGAAGAAGATATGGAGCAACGCGGTTTGGCTCTGGAGTATAGTTGCGCTGATAGCAACACTGGCACTCACGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

182

Amino Acids

20.82

Weight (kDa)

6.06

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	492
AciI	CCGC	3 cut(s)	217, 410, 492
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	4 cut(s)	188, 283, 311, 448
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	4 cut(s)	20, 64, 179, 194
AluI	AGCT	4 cut(s)	20, 64, 179, 194
AlwI	GGATC	1 cut(s)	143
Aor51HI	AGCGCT	1 cut(s)	381
AoxI	GGCC	3 cut(s)	397, 404, 421
ApeKI	GCWGC	3 cut(s)	41, 191, 382
ApoI	RAATTY	1 cut(s)	449
AseI	ATTAAT	1 cut(s)	35
Asp700I	GAANNNNTTC	2 cut(s)	119, 278
AspLEI	GCGC	2 cut(s)	382, 518
AspS9I	GGNCC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	251
AsuNHI	GCTAGC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	180
BbvI	GCAGC	3 cut(s)	53, 203, 369
BccI	CCATC	3 cut(s)	228, 308, 389
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	383
BfrI	CTTAAG	1 cut(s)	65
BisI	GCNGC	3 cut(s)	42, 192, 383
BlsI	GCNGC	3 cut(s)	43, 193, 384
BmgT120I	GGNCC	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	337
BmtI	GCTAGC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	2 cut(s)	282, 524
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	93
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 280, 293, 310
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	3 cut(s)	234, 299, 535
Bse21I	CCTNAGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	3 cut(s)	171, 344, 390
BseNI	ACTGG	3 cut(s)	234, 299, 535
BseXI	GCAGC	3 cut(s)	53, 203, 369
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	3 cut(s)	399, 406, 423
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmI	GAATGC	2 cut(s)	44, 261
BsnI	GGCC	3 cut(s)	399, 406, 423
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	3 cut(s)	217, 410, 492
BspANI	GGCC	3 cut(s)	399, 406, 423
BspCNI	CTCAG	3 cut(s)	172, 345, 389
BspFNI	CGCG	1 cut(s)	492
BspMAI	CTGCAG	1 cut(s)	387
BspOI	GCTAGC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	65
BsrI	ACTGG	3 cut(s)	234, 299, 535
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	148
BstAFI	CTTAAG	1 cut(s)	65
BstC8I	GCNNGC	6 cut(s)	22, 177, 387, 391, 408, 421
BstDEI	CTNAG	4 cut(s)	180, 266, 353, 376
BstEII	GGTNACC	1 cut(s)	239
BstFNI	CGCG	1 cut(s)	492
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	2 cut(s)	382, 518
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	4 cut(s)	386, 416, 522, 531
BstPI	GGTNACC	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	383
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	3 cut(s)	53, 203, 369
BstV2I	GAAGAC	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	399, 406, 423
BtgZI	GCGATG	1 cut(s)	408
BtsIMutI	CAGTG	4 cut(s)	12, 241, 350, 528
Cac8I	GCNNGC	6 cut(s)	22, 177, 387, 391, 408, 421
CfoI	GCGC	2 cut(s)	382, 518
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	50, 138, 332, 470
CviJI	RGCY	9 cut(s)	20, 64, 98, 179, 194, 399, 406, 423, 500
CviKI_1	RGCY	9 cut(s)	20, 64, 98, 179, 194, 399, 406, 423, 500
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	180, 266, 353, 376
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	397
Eco47III	AGCGCT	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	239
FaeI	CATG	4 cut(s)	53, 141, 335, 473
FaiI	YATR	7 cut(s)	32, 51, 139, 333, 471, 482, 510
FatI	CATG	4 cut(s)	49, 137, 331, 469
Fnu4HI	GCNGC	3 cut(s)	42, 192, 383
Fsp4HI	GCNGC	3 cut(s)	42, 192, 383
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	2 cut(s)	381, 517
GluI	GCNGC	3 cut(s)	42, 192, 383
GsuI	CTGGAG	2 cut(s)	282, 524
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	3 cut(s)	399, 406, 423
HhaI	GCGC	2 cut(s)	382, 518
Hin1II	CATG	4 cut(s)	53, 141, 335, 473
Hin6I	GCGC	2 cut(s)	380, 516
HinP1I	GCGC	2 cut(s)	380, 516
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	12, 367
Hpy188III	TCNNGA	2 cut(s)	152, 503
Hpy8I	GTNNAC	2 cut(s)	12, 367
HpyAV	CCTTC	5 cut(s)	71, 123, 254, 351, 446
HpyCH4V	TGCA	5 cut(s)	41, 74, 259, 350, 385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	386, 416, 522, 531
HpyF3I	CTNAG	4 cut(s)	180, 266, 353, 376
Hsp92II	CATG	4 cut(s)	53, 141, 335, 473
HspAI	GCGC	2 cut(s)	380, 516
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	484
LpnPI	CCDG	7 cut(s)	247, 312, 371, 405, 420, 488, 516
Lsp1109I	GCAGC	3 cut(s)	53, 203, 369
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	6 cut(s)	98, 191, 323, 364, 485, 488
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	4 cut(s)	36, 291, 306, 449
MluNI	TGGCCA	1 cut(s)	399
MnlI	CCTC	5 cut(s)	103, 175, 306, 313, 450
Mox20I	TGGCCA	1 cut(s)	399
MroXI	GAANNNNTTC	2 cut(s)	119, 278
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	4 cut(s)	35, 66, 228, 547
Msp20I	TGGCCA	1 cut(s)	399
MspCI	CTTAAG	1 cut(s)	65
Mva1269I	GAATGC	2 cut(s)	44, 261
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	4 cut(s)	386, 416, 522, 531
NdeII	GATC	1 cut(s)	148
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	4 cut(s)	53, 141, 335, 473
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	239
PctI	GAATGC	2 cut(s)	44, 261
PdmI	GAANNNNTTC	2 cut(s)	119, 278
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	43, 193, 384
PshBI	ATTAAT	1 cut(s)	35
PspEI	GGTNACC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	387
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	4 cut(s)	35, 66, 228, 547
SatI	GCNGC	3 cut(s)	42, 192, 383
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	422
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	4 cut(s)	36, 291, 306, 449
SsiI	CCGC	3 cut(s)	217, 410, 492
SspMI	CTAG	1 cut(s)	21
TasI	AATT	4 cut(s)	36, 291, 306, 449
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	4 cut(s)	35, 66, 228, 547
Tru9I	TTAA	4 cut(s)	35, 66, 228, 547
TscAI	CASTG	4 cut(s)	19, 241, 357, 535
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	3 cut(s)	41, 191, 382
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	4 cut(s)	66, 191, 348, 486
TspRI	CASTG	4 cut(s)	19, 241, 357, 535
Vha464I	CTTAAG	1 cut(s)	65
VspI	ATTAAT	1 cut(s)	35
XapI	RAATTY	1 cut(s)	449
XmnI	GAANNNNTTC	2 cut(s)	119, 278
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.