FvH4_5g29480

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000173
Physical Location & Seq
Reverse (-)
20437384 .. 20447371
9988 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29480.t1

Sequence Viewer

Length: 2277 bp
ATGTGGAAGCTTAGGTTTGGAGACGAGGGTGGTAATGACCCTTACTTGTACAGCACGAACAACTTCCATGGGAGGCAAACATGGGAGTTCGACCCGGATGCCGGCACTCCCCAAGAGCGAGCAGAGGTTGAAGAAGCTCGGCTGAGTTTTTACAACAATCGTCACCAGGTCCAAGCTTGTAGTGACCTCCTCTGTCGCATGCAGCTTCTGCGAGAGAAAAAGTTCAAACAAACAATTCCCCAAATAAAGGTGGAGGATGATGAGGACTGTACACATGTAAAGGCCACCGCTGCACTCAGAAGGGCGGCTACCTTCTACTCTGCCTTGCAATCACCTCACGGCCACTGGCCTGCTGAAAATGCCGGTCCCATGTTTTTCGCTCCTCCCTTGGTCATCTCGCTCTATATTACGGGGCATATTAGTAAGATGTTATCTGCAGAGCACCATAAGGAAATGCTTAGGTATATATATTGTCATCAGAACGAGGATGGTGGGTGGGGATTACACATACAGGCCCCCAGTATGATCTTCTGTACAATTCTGAACTACATTTGCATGCGTCTACTCGGAGAAGGACCCGAAGGTGGTTTACACAACGCTTGCGCAAGAGCACGCAAGTGGATTCTTGATCATGGTGGCGCAACACATTCATCATCCTGGGGAAAGGTTTACATGGCGTTACTCGGTGTGTATGAGTGGGAGGGATGCAACCCTATGCCCCCAGAGTATTGGATTTTCCCATCTTTGTTCCCTTTGCATCCAGCACAAATGAACTGCTACTGCCGCTTGACTTACTTACCTATGTCTTACCTGTTTGGGAAAAAATTTGTTGGCCCCATCACACCACTCGTTCTACAACTAAGAGAAGAAATGTACAATCAGCCACACAATGAGATCGACTGGGGCAAAGCACGGCATCTCTGTGCAAAGGAGGATAACTACCACCCCCATGGCAAGTTACAGTGTTTGATATGGGATACTCTTAACACAGTTTATGAGCCACTTCTTTCTTGCTGGCCCTTCAAAAAATTGAGAGAGAAGGCTCTTCAAGAAACTATTAAAGACATTCATTATGAAGATGAGAATAGTAGATACATAACAATCGGAGCAGGGGAAAAGCCATTAATGATGCTTGCTTGCTGGGTTGAAGATCGGAATGGAGAATCCTTTAAGAAGCATCTTGCAAGAGTTGCAGATTACATATGGATTGCAGAAGATGGAATAACTACGCAGAGTTTTGGTAGCCAGACGTGGGATGCAAGTCTCTCTATTCAAGCTTTACTTGCTGGAAATCTCACTGATGAACTTGGATCTGTACTTAAAAAAGCACATGAGTTCCTAAACAAATCTCAGGTTAGGGATAATCCTTCTGGTGACTTCGTAGCCCATTACCGTCACATTTCTAAAGGTGCTTGGACTTTCTCTGACCGAGATCATGGATGGCAAGTTTCTGATTGTACTGCAGAGGCTTTGAAGTGTTGCCTATTATTGTCAACGATGCCGACACAAATCGTGGGTGAACCAATTGAATCTGAGCGCTTGTATGATGCTGTCAATGTCATACTTTATCTACAGAATCCAAATGGAGGGGTATCAGCCTGGCTGCCAACAGGAGCTCCACAATGGTTGGAGTGGTTCAATCCAATAGAATTTTTCGAGGAAGTCGTCATAGAATATGAGTATGTTGAGTGCACTTCATCTTCAATTCAAGCATTAGCGTTATTCAGGAAGTTATACCCTGGGCATAGAAAGAAACGTGTCGATGATTTCATCACTCGTGCAGCATGGTACCTTGAAGACATGCAGACACCTGATGGCTCATGGTATGGAAAATGGGGAGTTTGCTTCATCTATGGAACACTGTTTGCAATTCGAGGGTTGAAGGCTGCTGGCAGGACGTACAGAAATTGTGAGGCAATTCGCAGAGGTGTTGCATTTTTACTCAAAATACAGACAGCTGATGGTGGTTGGGGAGAGAGCTATACTGCTAGTAGAAACAAGATCTACACACCTCTTGAAGGAAACCGATCGAACTTGGTGCAGACCGCAATGGGATTAATGGGATTAATTCATGGTGGACAGGCGGAGAGAGACCTTACTCCCATTCACAGAGCTGCCAAGCTTTTGATTAATTCTCAACTGGAAAATGGAGATTTCCCCCAACAGGAACTGATGGGGCTTTTCAATGTTAATGCCATGTTACACTATGCAGCATACAGAAATATCTACCCAATTTGGGCTCTCGCAGAATATCGGTCCCTTCCCTACTTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

759

Amino Acids

86.76

Weight (kDa)

6.29

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 100 - 398 2.2e-38 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 415 - 752 1.8e-43 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 604
Acc65I GGTACC 1 cut(s) 1788
AccB1I GGYRCC 1 cut(s) 1788
AccI GTMKAC 1 cut(s) 562
AciI CCGC 5 cut(s) 288, 305, 784, 2046, 2084
AclWI GGATC 1 cut(s) 1318
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 2 cut(s) 824, 1649
AfaI GTAC 8 cut(s) 50, 271, 535, 875, 1317, 1459, 1790, 1901
AfeI AGCGCT 1 cut(s) 1538
AfiI CCNNNNNNNGG 8 cut(s) 101, 247, 584, 1252, 1586, 2018, 2164, 2236
AflIII ACRYGT 2 cut(s) 274, 1756
AjiI CACGTC 1 cut(s) 1251
AjnI CCWGG 4 cut(s) 165, 656, 1598, 1738
AleI CACNNNNGTG 1 cut(s) 616
Alw21I GWGCWC 4 cut(s) 444, 613, 1618, 1694
Alw26I GTCTC 3 cut(s) 15, 1268, 2085
Alw44I GTGCAC 1 cut(s) 1690
AlwI GGATC 1 cut(s) 1318
AlwNI CAGNNNCTG 2 cut(s) 208, 2170
Aor51HI AGCGCT 1 cut(s) 1538
AoxI GGCC 6 cut(s) 282, 340, 347, 513, 832, 1016
ApaLI GTGCAC 1 cut(s) 1690
ApeKI GCWGC 7 cut(s) 202, 290, 1603, 1781, 1886, 2114, 2210
ApoI RAATTY 2 cut(s) 824, 1649
AseI ATTAAT 4 cut(s) 1124, 2057, 2066, 2130
Asp700I GAANNNNTTC 2 cut(s) 62, 221
Asp718I GGTACC 1 cut(s) 1788
AspLEI GCGC 3 cut(s) 605, 641, 1539
AspS9I GGNCC 7 cut(s) 169, 365, 514, 575, 833, 1017, 2256
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 4 cut(s) 155, 324, 1385, 1529
AvaII GGWCC 4 cut(s) 169, 365, 575, 2256
BaeGI GKGCMC 1 cut(s) 1694
BanI GGYRCC 1 cut(s) 1788
BanII GRGCYC 2 cut(s) 1618, 2242
BarI GAAGNNNNNNTAC 4 cut(s) 292, 324, 573, 605
BauI CACGAG 1 cut(s) 1776
BbsI GAAGAC 1 cut(s) 1803
Bbv12I GWGCWC 4 cut(s) 444, 613, 1618, 1694
BbvI GCAGC 7 cut(s) 214, 277, 1590, 1793, 1873, 2101, 2222
BccI CCATC 8 cut(s) 482, 748, 845, 1211, 1434, 1808, 1955, 2167
BceAI ACGGC 2 cut(s) 355, 929
BcgI CGANNNNNNTGC 4 cut(s) 80, 114, 2020, 2054
BciT130I CCWGG 4 cut(s) 167, 658, 1600, 1740
BciVI GTATCC 1 cut(s) 970
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 3 cut(s) 15, 1268, 2085
BfaI CTAG 1 cut(s) 1989
BfmI CTRYAG 3 cut(s) 435, 1461, 1571
BfoI RGCGCY 1 cut(s) 1540
BfuI GTATCC 1 cut(s) 970
BglII AGATCT 1 cut(s) 2001
BisI GCNGC 9 cut(s) 203, 291, 306, 784, 1604, 1782, 1887, 2115, 2211
BlsI GCNGC 9 cut(s) 204, 292, 307, 785, 1605, 1783, 1888, 2116, 2212
Bme1390I CCNGG 5 cut(s) 95, 167, 658, 1600, 1740
Bme18I GGWCC 4 cut(s) 169, 365, 575, 2256
BmgBI CACGTC 1 cut(s) 1251
BmgT120I GGNCC 7 cut(s) 169, 365, 514, 575, 833, 1017, 2256
BmiI GGNNCC 6 cut(s) 367, 516, 577, 835, 1790, 2258
BmrFI CCNGG 5 cut(s) 95, 167, 658, 1600, 1740
BmrI ACTGGG 2 cut(s) 513, 910
BmsI GCATC 9 cut(s) 88, 695, 766, 925, 1119, 1186, 1246, 1488, 1537
BmuI ACTGGG 2 cut(s) 513, 910
BpiI GAAGAC 1 cut(s) 1803
Bpu10I CCTNAGC 2 cut(s) 11, 458
BpuMI CCSGG 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 2085
BsaJI CCNNGG 6 cut(s) 67, 387, 657, 949, 1738, 1739
BsaXI ACNNNNNCTCC 2 cut(s) 1600, 1630
Bsc4I CCNNNNNNNGG 8 cut(s) 101, 247, 584, 1252, 1586, 2018, 2164, 2236
Bse118I RCCGGY 2 cut(s) 101, 362
Bse1I ACTGG 4 cut(s) 350, 519, 905, 2145
Bse3DI GCAATG 1 cut(s) 2055
BseBI CCWGG 4 cut(s) 167, 658, 1600, 1740
BseDI CCNNGG 6 cut(s) 67, 387, 657, 949, 1738, 1739
BseGI GGATG 8 cut(s) 103, 262, 493, 653, 710, 757, 1261, 1445
BseLI CCNNNNNNNGG 8 cut(s) 101, 247, 584, 1252, 1586, 2018, 2164, 2236
BseMI GCAATG 1 cut(s) 2055
BseMII CTCAG 4 cut(s) 134, 310, 1364, 1524
BseNI ACTGG 4 cut(s) 350, 519, 905, 2145
BseRI GAGGAG 2 cut(s) 179, 372
BseSI GKGCMC 1 cut(s) 1694
BseXI GCAGC 7 cut(s) 214, 277, 1590, 1793, 1873, 2101, 2222
BseYI CCCAGC 1 cut(s) 1140
BsgI GTGCAG 3 cut(s) 276, 1800, 2060
Bsh1285I CGRYCG 1 cut(s) 2030
BshFI GGCC 6 cut(s) 284, 342, 349, 515, 834, 1018
BshNI GGYRCC 1 cut(s) 1788
BsiEI CGRYCG 1 cut(s) 2030
BsiHKAI GWGCWC 4 cut(s) 444, 613, 1618, 1694
BsiSI CCGG 3 cut(s) 95, 102, 363
BslFI GGGAC 2 cut(s) 351, 2242
BslI CCNNNNNNNGG 8 cut(s) 101, 247, 584, 1252, 1586, 2018, 2164, 2236
BsmAI GTCTC 3 cut(s) 15, 1268, 2085
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 351, 2242
BsnI GGCC 6 cut(s) 284, 342, 349, 515, 834, 1018
Bso31I GGTCTC 1 cut(s) 2085
Bsp1286I GDGCHC 5 cut(s) 444, 613, 1618, 1694, 2242
Bsp1407I TGTACA 4 cut(s) 48, 269, 533, 873
Bsp143I GATC 8 cut(s) 525, 628, 894, 1150, 1310, 1432, 2001, 2027
Bsp19I CCATGG 2 cut(s) 67, 949
BspACI CCGC 5 cut(s) 288, 305, 784, 2046, 2084
BspANI GGCC 6 cut(s) 284, 342, 349, 515, 834, 1018
BspCNI CTCAG 4 cut(s) 135, 309, 1363, 1525
BspLI GGNNCC 6 cut(s) 367, 516, 577, 835, 1790, 2258
BspMAI CTGCAG 2 cut(s) 439, 1465
BspPI GGATC 1 cut(s) 1318
BspQI GCTCTTC 1 cut(s) 1050
BspT107I GGYRCC 1 cut(s) 1788
BspTNI GGTCTC 1 cut(s) 2085
BsrDI GCAATG 1 cut(s) 2055
BsrFI RCCGGY 2 cut(s) 101, 362
BsrGI TGTACA 4 cut(s) 48, 269, 533, 873
BsrI ACTGG 4 cut(s) 350, 519, 905, 2145
BssAI RCCGGY 2 cut(s) 101, 362
BssECI CCNNGG 6 cut(s) 67, 387, 657, 949, 1738, 1739
BssMI GATC 8 cut(s) 525, 628, 894, 1150, 1310, 1432, 2001, 2027
BssSI CACGAG 1 cut(s) 1776
BssT1I CCWWGG 3 cut(s) 67, 387, 949
Bst2BI CACGAG 1 cut(s) 1776
Bst2UI CCWGG 4 cut(s) 167, 658, 1600, 1740
Bst4CI ACNGT 5 cut(s) 269, 963, 991, 1394, 1863
Bst6I CTCTTC 1 cut(s) 1050
BstAPI GCANNNNNTGC 2 cut(s) 208, 1190
BstAUI TGTACA 4 cut(s) 48, 269, 533, 873
BstDEI CTNAG 7 cut(s) 11, 143, 296, 458, 860, 1350, 1533
BstDSI CCRYGG 2 cut(s) 67, 949
BstENI CCTNNNNNAGG 1 cut(s) 2016
BstF5I GGATG 8 cut(s) 103, 262, 493, 653, 710, 757, 1261, 1445
BstH2I RGCGCY 1 cut(s) 1540
BstHHI GCGC 3 cut(s) 605, 641, 1539
BstKTI GATC 8 cut(s) 528, 631, 897, 1153, 1313, 1435, 2004, 2030
BstMAI GTCTC 3 cut(s) 15, 1268, 2085
BstMBI GATC 8 cut(s) 525, 628, 894, 1150, 1310, 1432, 2001, 2027
BstMCI CGRYCG 1 cut(s) 2030
BstMWI GCNNNNNNNGC 6 cut(s) 208, 290, 359, 783, 1190, 1283
BstNI CCWGG 4 cut(s) 167, 658, 1600, 1740
BstNSI RCATGY 4 cut(s) 202, 278, 559, 1804
BstSCI CCNGG 5 cut(s) 93, 165, 656, 1598, 1738
BstSFI CTRYAG 3 cut(s) 435, 1461, 1571
BstSLI GKGCMC 1 cut(s) 1694
BstV1I GCAGC 7 cut(s) 214, 277, 1590, 1793, 1873, 2101, 2222
BstV2I GAAGAC 1 cut(s) 1803
BstX2I RGATCY 2 cut(s) 1310, 2001
BstXI CCANNNNNNTGG 2 cut(s) 729, 950
BstYI RGATCY 2 cut(s) 1310, 2001
BsuI GTATCC 1 cut(s) 970
BsuRI GGCC 6 cut(s) 284, 342, 349, 515, 834, 1018
BtgI CCRYGG 2 cut(s) 67, 949
BtrI CACGTC 1 cut(s) 1251
BtsCI GGATG 8 cut(s) 103, 262, 493, 653, 710, 757, 1261, 1445
BtsIMutI CAGTG 4 cut(s) 343, 968, 1296, 1859
CaiI CAGNNNCTG 2 cut(s) 208, 2170
CfoI GCGC 3 cut(s) 605, 641, 1539
Cfr10I RCCGGY 2 cut(s) 101, 362
Cfr13I GGNCC 7 cut(s) 169, 365, 514, 575, 833, 1017, 2256
CseI GACGC 1 cut(s) 548
CsiI ACCWGGT 1 cut(s) 165
Csp6I GTAC 8 cut(s) 49, 270, 534, 874, 1316, 1458, 1789, 1900
CspCI CAANNNNNGTGG 2 cut(s) 1608, 1643
CviQI GTAC 8 cut(s) 49, 270, 534, 874, 1316, 1458, 1789, 1900
DdeI CTNAG 7 cut(s) 11, 143, 296, 458, 860, 1350, 1533
DpnI GATC 8 cut(s) 527, 630, 896, 1152, 1312, 1434, 2003, 2029
DpnII GATC 8 cut(s) 525, 628, 894, 1150, 1310, 1432, 2001, 2027
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 1050
EarI CTCTTC 1 cut(s) 1050
EciI GGCGGA 1 cut(s) 2099
Ecl136II GAGCTC 1 cut(s) 1616
Eco130I CCWWGG 3 cut(s) 67, 387, 949
Eco24I GRGCYC 2 cut(s) 1618, 2242
Eco31I GGTCTC 1 cut(s) 2085
Eco47I GGWCC 4 cut(s) 169, 365, 575, 2256
Eco47III AGCGCT 1 cut(s) 1538
Eco53kI GAGCTC 1 cut(s) 1616
EcoICRI GAGCTC 1 cut(s) 1616
EcoNI CCTNNNNNAGG 1 cut(s) 2016
EcoO109I RGGNCCY 2 cut(s) 514, 575
EcoRII CCWGG 4 cut(s) 165, 656, 1598, 1738
EcoT14I CCWWGG 3 cut(s) 67, 387, 949
EcoT38I GRGCYC 2 cut(s) 1618, 2242
ErhI CCWWGG 3 cut(s) 67, 387, 949
Esp3I CGTCTC 1 cut(s) 15
FalI AAGNNNNNCTT 2 cut(s) 1266, 1298
FaqI GGGAC 2 cut(s) 351, 2242
FauNDI CATATG 1 cut(s) 1202
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 1 cut(s) 562
Fnu4HI GCNGC 9 cut(s) 203, 291, 306, 784, 1604, 1782, 1887, 2115, 2211
FokI GGATG 8 cut(s) 110, 269, 500, 640, 717, 744, 1268, 1452
FriOI GRGCYC 2 cut(s) 1618, 2242
Fsp4HI GCNGC 9 cut(s) 203, 291, 306, 784, 1604, 1782, 1887, 2115, 2211
FspBI CTAG 1 cut(s) 1989
FspI TGCGCA 1 cut(s) 604
GlaI GCGC 3 cut(s) 604, 640, 1538
GluI GCNGC 9 cut(s) 203, 291, 306, 784, 1604, 1782, 1887, 2115, 2211
GsaI CCCAGC 1 cut(s) 1144
HaeII RGCGCY 1 cut(s) 1540
HaeIII GGCC 6 cut(s) 284, 342, 349, 515, 834, 1018
HapII CCGG 3 cut(s) 95, 102, 363
HgaI GACGC 1 cut(s) 548
HhaI GCGC 3 cut(s) 605, 641, 1539
Hin6I GCGC 3 cut(s) 603, 639, 1537
HinP1I GCGC 3 cut(s) 603, 639, 1537
HincII GTYRAC 1 cut(s) 1494
HindII GTYRAC 1 cut(s) 1494
HindIII AAGCTT 4 cut(s) 8, 174, 1275, 2120
HinfI GANTC 4 cut(s) 622, 1163, 1529, 1576
HpaII CCGG 3 cut(s) 95, 102, 363
HphI GGTGA 4 cut(s) 155, 324, 1385, 1529
Hpy166II GTNNAC 8 cut(s) 272, 563, 590, 670, 1494, 1520, 1692, 2078
Hpy188I TCNGA 9 cut(s) 299, 480, 543, 569, 1106, 1155, 1426, 1453, 1534
Hpy188III TCNNGA 4 cut(s) 626, 1049, 1726, 2015
Hpy8I GTNNAC 8 cut(s) 272, 563, 590, 670, 1494, 1520, 1692, 2078
HpyCH4III ACNGT 5 cut(s) 269, 963, 991, 1394, 1863
HpyCH4IV ACGT 3 cut(s) 1250, 1756, 1898
HpyF10VI GCNNNNNNNGC 6 cut(s) 208, 290, 359, 783, 1190, 1283
HpyF3I CTNAG 7 cut(s) 11, 143, 296, 458, 860, 1350, 1533
HpySE526I ACGT 3 cut(s) 1250, 1756, 1898
HspAI GCGC 3 cut(s) 603, 639, 1537
KpnI GGTACC 1 cut(s) 1792
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 8 cut(s) 525, 628, 894, 1150, 1310, 1432, 2001, 2027
LguI GCTCTTC 1 cut(s) 1050
LmnI GCTCC 4 cut(s) 385, 1106, 1613, 1621
Lsp1109I GCAGC 7 cut(s) 214, 277, 1590, 1793, 1873, 2101, 2222
LweI GCATC 9 cut(s) 88, 695, 766, 925, 1119, 1186, 1246, 1488, 1537
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 1 cut(s) 1989
MaeII ACGT 3 cut(s) 1250, 1756, 1898
MaeIII GTNAC 7 cut(s) 161, 182, 678, 957, 1373, 1394, 2199
MalI GATC 8 cut(s) 527, 630, 896, 1152, 1312, 1434, 2003, 2029
MboI GATC 8 cut(s) 525, 628, 894, 1150, 1310, 1432, 2001, 2027
MboII GAAGA 9 cut(s) 143, 520, 878, 1037, 1088, 1160, 1226, 1692, 1808
MfeI CAATTG 1 cut(s) 1524
MflI RGATCY 2 cut(s) 1310, 2001
MhlI GDGCHC 5 cut(s) 444, 613, 1618, 1694, 2242
MmeI TCCRAC 1 cut(s) 1608
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 2 cut(s) 62, 221
MseI TTAA 9 cut(s) 984, 1059, 1124, 1170, 1320, 2057, 2066, 2130, 2190
MslI CAYNNNNRTG 4 cut(s) 554, 616, 921, 948
MspA1I CMGCKG 2 cut(s) 290, 1958
MspI CCGG 3 cut(s) 95, 102, 363
MspR9I CCNGG 5 cut(s) 95, 167, 658, 1600, 1740
MunI CAATTG 1 cut(s) 1524
MvaI CCWGG 4 cut(s) 167, 658, 1600, 1740
MwoI GCNNNNNNNGC 6 cut(s) 208, 290, 359, 783, 1190, 1283
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 95
NcoI CCATGG 2 cut(s) 67, 949
NdeI CATATG 1 cut(s) 1202
NdeII GATC 8 cut(s) 525, 628, 894, 1150, 1310, 1432, 2001, 2027
NgoMIV GCCGGC 1 cut(s) 101
NlaIV GGNNCC 6 cut(s) 367, 516, 577, 835, 1790, 2258
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 4 cut(s) 161, 182, 1373, 1394
NsbI TGCGCA 1 cut(s) 604
NspI RCATGY 4 cut(s) 202, 278, 559, 1804
OliI CACNNNNGTG 1 cut(s) 616
PaeI GCATGC 2 cut(s) 202, 559
PasI CCCWGGG 1 cut(s) 1739
PciI ACATGT 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 1050
PcsI WCGNNNNNNNCGW 1 cut(s) 1662
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 2 cut(s) 62, 221
PfeI GAWTC 4 cut(s) 622, 1163, 1529, 1576
PkrI GCNGC 9 cut(s) 204, 292, 307, 785, 1605, 1783, 1888, 2116, 2212
Ple19I CGATCG 1 cut(s) 2030
PpuMI RGGWCCY 1 cut(s) 575
PscI ACATGT 1 cut(s) 274
PshBI ATTAAT 4 cut(s) 1124, 2057, 2066, 2130
Psp124BI GAGCTC 1 cut(s) 1618
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 4 cut(s) 165, 656, 1598, 1738
PspFI CCCAGC 1 cut(s) 1140
PspGI CCWGG 4 cut(s) 165, 656, 1598, 1738
PspN4I GGNNCC 6 cut(s) 367, 516, 577, 835, 1790, 2258
PspPI GGNCC 7 cut(s) 169, 365, 514, 575, 833, 1017, 2256
PspPPI RGGWCCY 1 cut(s) 575
PstI CTGCAG 2 cut(s) 439, 1465
PstNI CAGNNNCTG 2 cut(s) 208, 2170
PsuI RGATCY 2 cut(s) 1310, 2001
PvuI CGATCG 1 cut(s) 2030
PvuII CAGCTG 1 cut(s) 1958
RsaI GTAC 8 cut(s) 50, 271, 535, 875, 1317, 1459, 1790, 1901
RsaNI GTAC 8 cut(s) 49, 270, 534, 874, 1316, 1458, 1789, 1900
RseI CAYNNNNRTG 4 cut(s) 554, 616, 921, 948
SacI GAGCTC 1 cut(s) 1618
SapI GCTCTTC 1 cut(s) 1050
SaqAI TTAA 9 cut(s) 984, 1059, 1124, 1170, 1320, 2057, 2066, 2130, 2190
SatI GCNGC 9 cut(s) 203, 291, 306, 784, 1604, 1782, 1887, 2115, 2211
Sau3AI GATC 8 cut(s) 525, 628, 894, 1150, 1310, 1432, 2001, 2027
Sau96I GGNCC 7 cut(s) 169, 365, 514, 575, 833, 1017, 2256
ScrFI CCNGG 5 cut(s) 95, 167, 658, 1600, 1740
SduI GDGCHC 5 cut(s) 444, 613, 1618, 1694, 2242
SexAI ACCWGGT 1 cut(s) 165
SfaNI GCATC 9 cut(s) 88, 695, 766, 925, 1119, 1186, 1246, 1488, 1537
SfcI CTRYAG 3 cut(s) 435, 1461, 1571
SinI GGWCC 4 cut(s) 169, 365, 575, 2256
SmiMI CAYNNNNRTG 4 cut(s) 554, 616, 921, 948
SphI GCATGC 2 cut(s) 202, 559
SsiI CCGC 5 cut(s) 288, 305, 784, 2046, 2084
SspMI CTAG 1 cut(s) 1989
SstI GAGCTC 1 cut(s) 1618
StyD4I CCNGG 5 cut(s) 93, 165, 656, 1598, 1738
StyI CCWWGG 3 cut(s) 67, 387, 949
TaaI ACNGT 5 cut(s) 269, 963, 991, 1394, 1863
TaiI ACGT 3 cut(s) 1253, 1759, 1901
TaqI TCGA 6 cut(s) 90, 897, 1656, 1761, 1873, 2030
TaqII GACCGA 2 cut(s) 1443, 2244
TatI WGTACW 6 cut(s) 48, 269, 533, 873, 1315, 1457
TauI GCSGC 2 cut(s) 308, 786
TfiI GAWTC 4 cut(s) 622, 1163, 1529, 1576
Tru1I TTAA 9 cut(s) 984, 1059, 1124, 1170, 1320, 2057, 2066, 2130, 2190
Tru9I TTAA 9 cut(s) 984, 1059, 1124, 1170, 1320, 2057, 2066, 2130, 2190
TscAI CASTG 4 cut(s) 350, 968, 1303, 1866
TseFI GTSAC 4 cut(s) 161, 182, 1373, 1394
TseI GCWGC 7 cut(s) 202, 290, 1603, 1781, 1886, 2114, 2210
Tsp45I GTSAC 4 cut(s) 161, 182, 1373, 1394
TspDTI ATGAA 9 cut(s) 639, 785, 1058, 1089, 1317, 1686, 1759, 1837, 2060
TspRI CASTG 4 cut(s) 350, 968, 1303, 1866
VneI GTGCAC 1 cut(s) 1690
VpaK11BI GGWCC 4 cut(s) 169, 365, 575, 2256
VspI ATTAAT 4 cut(s) 1124, 2057, 2066, 2130
XagI CCTNNNNNAGG 1 cut(s) 2016
XapI RAATTY 2 cut(s) 824, 1649
XceI RCATGY 4 cut(s) 202, 278, 559, 1804
XmiI GTMKAC 1 cut(s) 562
XmnI GAANNNNTTC 2 cut(s) 62, 221
XspI CTAG 1 cut(s) 1989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.