Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Reverse (-)

70207558 .. 70229892

Gene Structure 22335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG481700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTGGAACGAGAATGTAACATCAATCAACCAACATTCCATGAAATGTGGAAGCTTAAGGTTGCAGAAGGTGGAGAAGATTCCTCGGCTTACATTTATAGCACGAACAACTTCGTGGGAAGACAGACATGGAAGTTTAATCCCGATGTAGGAACTGCTGAAGAGCGAGCTGAGGTTGAAGCAGCTCGTCTTCATTTCTACAACAACCGCCATCAAGTTAAACCCAGTGGTGACCTTCTTTGGAGAATGCAGTTCCTAAGGGAGAAGCAGTTCAAACAGACAATTCCTCCAGTAAAAATTGAAGATGGCGAGGTTATCACATACGAAAAAACCACAGATGCACTGAGAAGGTCTGTCCACTTCTTCTCAGCGCTGCAGGCAAGCGATGGCCATTGGCCTGCGGAAAATGCTGGCCCTTTATTTTTCCTTCCTCCTTTGGAATGGATTGCGTTCTCACTTCGGCCATCAAGGTTACTTGAAAAAGCTTCTAGGGCAACTAAATTTGAGAAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

171

Amino Acids

19.86

Weight (kDa)

6.98

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	208, 401
AcoI	YGGCCR	2 cut(s)	388, 461
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	180
AfeI	AGCGCT	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	4 cut(s)	179, 274, 302, 479
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	4 cut(s)	55, 170, 185, 485
AluI	AGCT	4 cut(s)	55, 170, 185, 485
Aor51HI	AGCGCT	1 cut(s)	372
AoxI	GGCC	4 cut(s)	388, 395, 412, 461
ApeKI	GCWGC	2 cut(s)	182, 373
ApoI	RAATTY	1 cut(s)	500
Asp700I	GAANNNNTTC	2 cut(s)	110, 269
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	127, 182
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	194, 360
BccI	CCATC	4 cut(s)	219, 299, 380, 472
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	374
BfrI	CTTAAG	1 cut(s)	56
BisI	GCNGC	2 cut(s)	183, 374
BlsI	GCNGC	2 cut(s)	184, 375
BmgT120I	GGNCC	1 cut(s)	413
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	127, 182
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	84
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 271, 284, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	225, 290
Bse21I	CCTNAGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	3 cut(s)	162, 335, 381
BseNI	ACTGG	2 cut(s)	225, 290
BseXI	GCAGC	2 cut(s)	194, 360
BshFI	GGCC	4 cut(s)	390, 397, 414, 463
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	4 cut(s)	390, 397, 414, 463
BspACI	CCGC	2 cut(s)	208, 401
BspANI	GGCC	4 cut(s)	390, 397, 414, 463
BspCNI	CTCAG	3 cut(s)	163, 336, 380
BspMAI	CTGCAG	1 cut(s)	378
BspQI	GCTCTTC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	225, 290
BssECI	CCNNGG	1 cut(s)	84
Bst6I	CTCTTC	2 cut(s)	156, 503
BstAFI	CTTAAG	1 cut(s)	56
BstC8I	GCNNGC	5 cut(s)	168, 378, 382, 399, 412
BstDEI	CTNAG	4 cut(s)	171, 257, 344, 367
BstEII	GGTNACC	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 407, 491
BstPI	GGTNACC	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	194, 360
BstV2I	GAAGAC	2 cut(s)	127, 182
Bsu36I	CCTNAGG	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	390, 397, 414, 463
BtgZI	GCGATG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	232, 341
Cac8I	GCNNGC	5 cut(s)	168, 378, 382, 399, 412
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	413
CviAII	CATG	2 cut(s)	41, 129
CviJI	RGCY	9 cut(s)	55, 89, 170, 185, 390, 397, 414, 463, 485
CviKI_1	RGCY	9 cut(s)	55, 89, 170, 185, 390, 397, 414, 463, 485
DdeI	CTNAG	4 cut(s)	171, 257, 344, 367
EaeI	YGGCCR	2 cut(s)	388, 461
Eam1104I	CTCTTC	2 cut(s)	156, 503
EarI	CTCTTC	2 cut(s)	156, 503
Eco47III	AGCGCT	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	230
FaeI	CATG	2 cut(s)	44, 132
FaiI	YATR	4 cut(s)	42, 99, 130, 322
FatI	CATG	2 cut(s)	40, 128
Fnu4HI	GCNGC	2 cut(s)	183, 374
Fsp4HI	GCNGC	2 cut(s)	183, 374
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	2 cut(s)	183, 374
GsuI	CTGGAG	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	4 cut(s)	390, 397, 414, 463
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	44, 132
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HindIII	AAGCTT	2 cut(s)	53, 483
HinfI	GANTC	1 cut(s)	80
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	4 cut(s)	62, 245, 342, 437
HpyCH4V	TGCA	4 cut(s)	65, 250, 341, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 407, 491
HpyF3I	CTNAG	4 cut(s)	171, 257, 344, 367
Hsp92II	CATG	2 cut(s)	44, 132
HspAI	GCGC	1 cut(s)	371
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	5 cut(s)	238, 303, 362, 396, 411
Lsp1109I	GCAGC	2 cut(s)	194, 360
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	3 cut(s)	17, 230, 471
MboII	GAAGA	6 cut(s)	89, 132, 173, 182, 314, 355
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	3 cut(s)	282, 297, 500
MluNI	TGGCCA	1 cut(s)	390
MnlI	CCTC	5 cut(s)	94, 166, 297, 304, 441
Mox20I	TGGCCA	1 cut(s)	390
MroXI	GAANNNNTTC	2 cut(s)	110, 269
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	3 cut(s)	57, 138, 219
Msp20I	TGGCCA	1 cut(s)	390
MspCI	CTTAAG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	377, 407, 491
NlaIII	CATG	2 cut(s)	44, 132
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	156
PctI	GAATGC	1 cut(s)	252
PdmI	GAANNNNTTC	2 cut(s)	110, 269
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	184, 375
PspEI	GGTNACC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	57, 138, 219
SatI	GCNGC	2 cut(s)	183, 374
Sau96I	GGNCC	1 cut(s)	413
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	3 cut(s)	282, 297, 500
SsiI	CCGC	2 cut(s)	208, 401
SspMI	CTAG	1 cut(s)	489
TasI	AATT	3 cut(s)	282, 297, 500
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	57, 138, 219
Tru9I	TTAA	3 cut(s)	57, 138, 219
TscAI	CASTG	2 cut(s)	232, 348
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	2 cut(s)	182, 373
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	57, 182
TspRI	CASTG	2 cut(s)	232, 348
Vha464I	CTTAAG	1 cut(s)	56
XapI	RAATTY	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	110, 269
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.