Rw2G037980

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000173
Physical Location & Seq
Forward (+)
62658465 .. 62665550
7086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037980.1

Sequence Viewer

Length: 2166 bp
ATGTGGAAGCTTAGGTTTGGAGATGAAGGTGCAAATAATGACCCTTACTTGTTCAGCACAAACAACTTCCATGGGAGGCAAACATGGGAGTTCGACCCGGCTGCCGGCACACCTGAAGAGCGAGCAGAGGTGGAAGAAGTTCGGCTAAGTTTTTACAACAATCGTCACCGAGTCCAGGCTTGTAGTGACCTCCTTAGTCGAATGCAGCTTCTGGGAGAGAAAAAGTTCAAACAAAAGATTCCCCAAGTAAAGGTGGAGGATGGTGAGGACTGTACATATGAAAAGGCCACCGCTGCATTTAGAAGGGCAGCTACCTTCTACTCTGCCTTGCAATCACCTCATGGCCATTGGCCTGCTGAAAATGCCGGTCCCATGTTTTATATTCCTCCCTTGGTCATATCGCTCTATATTACGGGGCATCTTAGTAAGGTATTCTCTGCAGAGCATTTTAAGGAAATGCTTAGATATATATACTGTCATCAGAACGAGGATGGTGGGTGGGGATTACACATACAGGCCCCTAGTATGATGTTTTGTACACTTCTGAATTACATTTGCATGCGTCTACTTGGAGAAGGACCCGATGGTGGTTTAAACAACGCTTGTGCAAGAGCACGCAAGTGGATTCTTGATCATGGTGGTGCAACACATTCATCATCCTGGGGAAAGACTTATATGGCTATACTCGGTGTGTATGAGTGGGAGGGATGCAACCCGATTCCCCCAGAGTTTTGGATTTTCTCGTCTTTGTTCCCTTTGCATCCAGCAAAAATGTATTGCTACTGCCGGTTGACTTACTTGCCTATATCGTATCTGTTTGGGAAAAGATTTGTTGGCCCCATCACCCCTCTCATTCTACAACTGAGAGAAGAAATGTACAATGAGCCATACAATGAAATTCAATGGGGCAAAGTACGCCATCTCTGTGCAAAGGAGGATAACTACTATCCCCATGGCAAGTTTCAATGTTTGATGTGGGATACTCTGAACACGGTTTATGAGCCTCTTCTTTCTTGCTGGCCCTTCAATAAGTTGAGAGAGAAGGCTCTTCAAGAAACTATTGAACACATTCATTATGAAGATGAAAATAGTAGATACATAACAATTGGATGTGGGGAAAAGCCGTTAATGATGCTTGCTTGCTGGATTGAAGATCCAAATGGAGAACCCTTTAAGAAGCATCTTGCAAGAGTTATAGATTACATATGGGTTGCAGAAGATGGAATAACTACGCAGAGTTTTGGTAGCCAGGCATGGGATGCTAGTCTTTCTGTTCAAGCTTTGCTTGCTGGAAATCTCACTGATGAACTTGGATTAGTACTTCAGAAAGCACATGAATTCCTAAACAAATCTCAGTGTTGCCTATTGCTTTCAATGATGCCGACGCAAATCGTGGGTGAACCAGTTGAATCTGAGCGCTTGTATGATGCTGTCAATGTCATACTTTCTCTACAAAATCCAAATGGTGGTGTATCAGCCTGGCAGCCAACAGGAGCTCCACAATGGTTGGAGTGGTTCAATCCAGTAGAATTTCTCGAGGATGTTGTCATTGAATACGAGTATGTTGAGTGCACTTCATCTTCAATTCAAGCGTTAGCTTTATTCAGGAAGTTATACCCTGGGCATAGAAAGAAACATATCGATGATTTCATCACAAATGCAGCATGTTACCTTGAAGACATGCAGACACCTGATGGGTCATGGTATGGAAGGTGGGGAATCTGCTTCATCTATGGAACATGGTTTGCAATCCGAGGGTTGAAGGCTGCTGGTAGAACTTACAAAAATTGTGAGGCAATACACAGAGGTGTTGACTTTTTACTCAAGATACAGAGAAATGATGGTGGTTGGGGAGAGAGCTATACTTCTTGTACAAACAAGATCTATACACCTCTTCAAGGAGACCGGTCGAATTTGGTGCAGACTGCAATGGGACTAATGGGATTAATTCATGGTGGACAGGCCGAGAGAGACCCTACTCCCATTCACAGAGCTGCGAAGCTTTTGATTAATTCTCAATTGGAAAATGGAGATTTTCCCCAACAGGAACTGATGGGGGTTTTCAATGTCAATGCCATGTTACACTATGCAGCATACAGGAATATCTTCCCAATTTGGGCTCTCGGAGAATATCATTCCCTTCCCTCCTTCTGGATAGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

721

Amino Acids

82.57

Weight (kDa)

5.75

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 102 - 362 1.3e-34 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 465 - 712 8e-39 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1466
AccI GTMKAC 1 cut(s) 565
AciI CCGC 1 cut(s) 291
AclWI GGATC 1 cut(s) 1148
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 4 cut(s) 897, 1337, 1529, 1912
AcuI CTGAAG 2 cut(s) 135, 1307
AfaI GTAC 6 cut(s) 274, 538, 878, 915, 1320, 1873
AfeI AGCGCT 1 cut(s) 1418
AfiI CCNNNNNNNGG 9 cut(s) 104, 175, 250, 587, 1255, 1466, 1898, 2116, 2151
AgeI ACCGGT 1 cut(s) 1905
AjnI CCWGG 5 cut(s) 174, 659, 1248, 1478, 1618
AleI CACNNNNGTG 2 cut(s) 619, 1806
AluBI AGCT 9 cut(s) 10, 208, 311, 1280, 1496, 1598, 1860, 1994, 2002
AluI AGCT 9 cut(s) 10, 208, 311, 1280, 1496, 1598, 1860, 1994, 2002
Alw21I GWGCWC 3 cut(s) 616, 1498, 1574
Alw26I GTCTC 2 cut(s) 1896, 1965
Alw44I GTGCAC 1 cut(s) 1570
AlwI GGATC 1 cut(s) 1148
AlwNI CAGNNNCTG 2 cut(s) 211, 2050
Ama87I CYCGRG 1 cut(s) 1535
Aor51HI AGCGCT 1 cut(s) 1418
AoxI GGCC 7 cut(s) 285, 343, 350, 516, 835, 1019, 1962
ApaLI GTGCAC 1 cut(s) 1570
ApeKI GCWGC 9 cut(s) 101, 205, 293, 308, 1483, 1661, 1766, 1994, 2090
ApoI RAATTY 4 cut(s) 897, 1337, 1529, 1912
AseI ATTAAT 2 cut(s) 1946, 2010
AsiGI ACCGGT 1 cut(s) 1905
Asp700I GAANNNNTTC 4 cut(s) 138, 224, 1068, 2105
AspLEI GCGC 1 cut(s) 1419
AspS9I GGNCC 5 cut(s) 368, 517, 578, 836, 1020
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 5 cut(s) 158, 275, 327, 835, 1409
AvaI CYCGRG 1 cut(s) 1535
AvaII GGWCC 2 cut(s) 368, 578
BaeGI GKGCMC 1 cut(s) 1574
BalI TGGCCA 1 cut(s) 345
BanII GRGCYC 2 cut(s) 1498, 2122
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
BbsI GAAGAC 1 cut(s) 1683
Bbv12I GWGCWC 3 cut(s) 616, 1498, 1574
BbvI GCAGC 9 cut(s) 88, 217, 280, 320, 1495, 1673, 1753, 1981, 2102
BccI CCATC 9 cut(s) 254, 485, 578, 848, 927, 1214, 1688, 1835, 2047
BceAI ACGGC 1 cut(s) 1108
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 1900, 1934
BciT130I CCWGG 5 cut(s) 176, 661, 1250, 1480, 1620
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 1896, 1965
BfaI CTAG 2 cut(s) 522, 1263
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 1420
BfuI GTATCC 1 cut(s) 973
BglII AGATCT 1 cut(s) 1881
BisI GCNGC 9 cut(s) 102, 206, 294, 309, 1484, 1662, 1767, 1995, 2091
BlsI GCNGC 9 cut(s) 103, 207, 295, 310, 1485, 1663, 1768, 1996, 2092
BmcAI AGTACT 1 cut(s) 1320
Bme1390I CCNGG 6 cut(s) 98, 176, 661, 1250, 1480, 1620
Bme18I GGWCC 2 cut(s) 368, 578
BmeT110I CYCGRG 1 cut(s) 1535
BmgT120I GGNCC 5 cut(s) 368, 517, 578, 836, 1020
BmiI GGNNCC 4 cut(s) 370, 519, 580, 838
BmrFI CCNGG 6 cut(s) 98, 176, 661, 1250, 1480, 1620
BmsI GCATC 8 cut(s) 427, 698, 769, 1122, 1189, 1249, 1368, 1417
BpiI GAAGAC 1 cut(s) 1683
Bpu10I CCTNAGC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 1808
BpuMI CCSGG 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 1641
BsaI GGTCTC 2 cut(s) 1896, 1965
BsaJI CCNNGG 7 cut(s) 70, 390, 660, 952, 1618, 1619, 1753
BsaWI WCCGGW 1 cut(s) 1905
BsaXI ACNNNNNCTCC 2 cut(s) 1480, 1510
Bsc4I CCNNNNNNNGG 9 cut(s) 104, 175, 250, 587, 1255, 1466, 1898, 2116, 2151
Bse118I RCCGGY 4 cut(s) 104, 365, 786, 1905
Bse1I ACTGG 2 cut(s) 1403, 1523
Bse3DI GCAATG 1 cut(s) 1935
BseBI CCWGG 5 cut(s) 176, 661, 1250, 1480, 1620
BseCI ATCGAT 1 cut(s) 1641
BseDI CCNNGG 7 cut(s) 70, 390, 660, 952, 1618, 1619, 1753
BseGI GGATG 8 cut(s) 265, 496, 656, 713, 760, 1115, 1264, 1546
BseLI CCNNNNNNNGG 9 cut(s) 104, 175, 250, 587, 1255, 1466, 1898, 2116, 2151
BseMI GCAATG 1 cut(s) 1935
BseMII CTCAG 3 cut(s) 854, 1367, 1404
BseNI ACTGG 2 cut(s) 1403, 1523
BseSI GKGCMC 1 cut(s) 1574
BseXI GCAGC 9 cut(s) 88, 217, 280, 320, 1495, 1673, 1753, 1981, 2102
BsgI GTGCAG 1 cut(s) 1940
Bsh1285I CGRYCG 1 cut(s) 1910
BshFI GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 1964
BshTI ACCGGT 1 cut(s) 1905
BshVI ATCGAT 1 cut(s) 1641
BsiEI CGRYCG 1 cut(s) 1910
BsiHKAI GWGCWC 3 cut(s) 616, 1498, 1574
BsiHKCI CYCGRG 1 cut(s) 1535
BsiSI CCGG 5 cut(s) 98, 105, 366, 787, 1906
BslFI GGGAC 2 cut(s) 354, 1947
BslI CCNNNNNNNGG 9 cut(s) 104, 175, 250, 587, 1255, 1466, 1898, 2116, 2151
BsmAI GTCTC 2 cut(s) 1896, 1965
BsmFI GGGAC 2 cut(s) 354, 1947
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 1964
Bso31I GGTCTC 2 cut(s) 1896, 1965
BsoBI CYCGRG 1 cut(s) 1535
Bsp1286I GDGCHC 4 cut(s) 616, 1498, 1574, 2122
Bsp1407I TGTACA 4 cut(s) 272, 536, 876, 1871
Bsp143I GATC 3 cut(s) 631, 1153, 1881
Bsp19I CCATGG 2 cut(s) 70, 952
BspACI CCGC 1 cut(s) 291
BspANI GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 1964
BspCNI CTCAG 3 cut(s) 855, 1366, 1405
BspDI ATCGAT 1 cut(s) 1641
BspLI GGNNCC 4 cut(s) 370, 519, 580, 838
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 1 cut(s) 1148
BspQI GCTCTTC 2 cut(s) 111, 1053
BspTNI GGTCTC 2 cut(s) 1896, 1965
BsrDI GCAATG 1 cut(s) 1935
BsrFI RCCGGY 4 cut(s) 104, 365, 786, 1905
BsrGI TGTACA 4 cut(s) 272, 536, 876, 1871
BsrI ACTGG 2 cut(s) 1403, 1523
BssAI RCCGGY 4 cut(s) 104, 365, 786, 1905
BssECI CCNNGG 7 cut(s) 70, 390, 660, 952, 1618, 1619, 1753
BssMI GATC 3 cut(s) 631, 1153, 1881
BssT1I CCWWGG 3 cut(s) 70, 390, 952
Bst2UI CCWGG 5 cut(s) 176, 661, 1250, 1480, 1620
Bst4CI ACNGT 3 cut(s) 272, 476, 994
Bst6I CTCTTC 4 cut(s) 111, 1011, 1053, 1899
BstAPI GCANNNNNTGC 1 cut(s) 1259
BstAUI TGTACA 4 cut(s) 272, 536, 876, 1871
BstC8I GCNNGC 9 cut(s) 106, 123, 354, 560, 616, 1019, 1137, 1141, 1287
BstDEI CTNAG 8 cut(s) 11, 146, 194, 422, 461, 863, 1353, 1413
BstDSI CCRYGG 2 cut(s) 70, 952
BstENI CCTNNNNNAGG 1 cut(s) 1896
BstF5I GGATG 8 cut(s) 265, 496, 656, 713, 760, 1115, 1264, 1546
BstH2I RGCGCY 1 cut(s) 1420
BstHHI GCGC 1 cut(s) 1419
BstKTI GATC 3 cut(s) 634, 1156, 1884
BstMAI GTCTC 2 cut(s) 1896, 1965
BstMBI GATC 3 cut(s) 631, 1153, 1881
BstMCI CGRYCG 1 cut(s) 1910
BstMWI GCNNNNNNNGC 5 cut(s) 293, 362, 915, 1259, 1286
BstNI CCWGG 5 cut(s) 176, 661, 1250, 1480, 1620
BstNSI RCATGY 3 cut(s) 562, 1668, 1684
BstSCI CCNGG 6 cut(s) 96, 174, 659, 1248, 1478, 1618
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 1574
BstV1I GCAGC 9 cut(s) 88, 217, 280, 320, 1495, 1673, 1753, 1981, 2102
BstV2I GAAGAC 1 cut(s) 1683
BstX2I RGATCY 2 cut(s) 1153, 1881
BstXI CCANNNNNNTGG 1 cut(s) 732
BstYI RGATCY 2 cut(s) 1153, 1881
Bsu15I ATCGAT 1 cut(s) 1641
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 1964
BsuTUI ATCGAT 1 cut(s) 1641
BtgI CCRYGG 2 cut(s) 70, 952
BtsCI GGATG 8 cut(s) 265, 496, 656, 713, 760, 1115, 1264, 1546
BtsIMutI CAGTG 2 cut(s) 1299, 1361
Cac8I GCNNGC 9 cut(s) 106, 123, 354, 560, 616, 1019, 1137, 1141, 1287
CaiI CAGNNNCTG 2 cut(s) 211, 2050
CfoI GCGC 1 cut(s) 1419
Cfr10I RCCGGY 4 cut(s) 104, 365, 786, 1905
Cfr13I GGNCC 5 cut(s) 368, 517, 578, 836, 1020
ClaI ATCGAT 1 cut(s) 1641
CseI GACGC 2 cut(s) 551, 1393
Csp6I GTAC 6 cut(s) 273, 537, 877, 914, 1319, 1872
CspAI ACCGGT 1 cut(s) 1905
CspCI CAANNNNNGTGG 2 cut(s) 1488, 1523
CviQI GTAC 6 cut(s) 273, 537, 877, 914, 1319, 1872
DdeI CTNAG 8 cut(s) 11, 146, 194, 422, 461, 863, 1353, 1413
DpnI GATC 3 cut(s) 633, 1155, 1883
DpnII GATC 3 cut(s) 631, 1153, 1881
DraI TTTAAA 1 cut(s) 594
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 4 cut(s) 111, 1011, 1053, 1899
EarI CTCTTC 4 cut(s) 111, 1011, 1053, 1899
Ecl136II GAGCTC 1 cut(s) 1496
Eco130I CCWWGG 3 cut(s) 70, 390, 952
Eco24I GRGCYC 2 cut(s) 1498, 2122
Eco31I GGTCTC 2 cut(s) 1896, 1965
Eco47I GGWCC 2 cut(s) 368, 578
Eco47III AGCGCT 1 cut(s) 1418
Eco53kI GAGCTC 1 cut(s) 1496
Eco57I CTGAAG 2 cut(s) 135, 1307
Eco88I CYCGRG 1 cut(s) 1535
EcoICRI GAGCTC 1 cut(s) 1496
EcoNI CCTNNNNNAGG 1 cut(s) 1896
EcoO109I RGGNCCY 2 cut(s) 517, 578
EcoRI GAATTC 1 cut(s) 1337
EcoRII CCWGG 5 cut(s) 174, 659, 1248, 1478, 1618
EcoT14I CCWWGG 3 cut(s) 70, 390, 952
EcoT38I GRGCYC 2 cut(s) 1498, 2122
ErhI CCWWGG 3 cut(s) 70, 390, 952
FalI AAGNNNNNCTT 2 cut(s) 1269, 1301
FaqI GGGAC 2 cut(s) 354, 1947
FauNDI CATATG 2 cut(s) 277, 1205
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 9 cut(s) 102, 206, 294, 309, 1484, 1662, 1767, 1995, 2091
FokI GGATG 8 cut(s) 272, 503, 643, 720, 747, 1122, 1271, 1553
FriOI GRGCYC 2 cut(s) 1498, 2122
Fsp4HI GCNGC 9 cut(s) 102, 206, 294, 309, 1484, 1662, 1767, 1995, 2091
FspBI CTAG 2 cut(s) 522, 1263
GlaI GCGC 1 cut(s) 1418
GluI GCNGC 9 cut(s) 102, 206, 294, 309, 1484, 1662, 1767, 1995, 2091
HaeII RGCGCY 1 cut(s) 1420
HaeIII GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 1964
HapII CCGG 5 cut(s) 98, 105, 366, 787, 1906
HgaI GACGC 2 cut(s) 551, 1393
HhaI GCGC 1 cut(s) 1419
Hin6I GCGC 1 cut(s) 1417
HinP1I GCGC 1 cut(s) 1417
HincII GTYRAC 2 cut(s) 792, 1813
HindII GTYRAC 2 cut(s) 792, 1813
HindIII AAGCTT 3 cut(s) 8, 1278, 2000
HinfI GANTC 6 cut(s) 171, 238, 625, 718, 1409, 1719
HpaII CCGG 5 cut(s) 98, 105, 366, 787, 1906
HphI GGTGA 5 cut(s) 158, 275, 327, 835, 1409
Hpy166II GTNNAC 7 cut(s) 539, 566, 792, 1400, 1572, 1813, 1958
Hpy188I TCNGA 7 cut(s) 483, 546, 987, 1326, 1414, 1754, 2126
Hpy188III TCNNGA 6 cut(s) 629, 1052, 1535, 1606, 1825, 2152
Hpy8I GTNNAC 7 cut(s) 539, 566, 792, 1400, 1572, 1813, 1958
Hpy99I CGWCG 1 cut(s) 1387
HpyCH4III ACNGT 3 cut(s) 272, 476, 994
HpyF10VI GCNNNNNNNGC 5 cut(s) 293, 362, 915, 1259, 1286
HpyF3I CTNAG 8 cut(s) 11, 146, 194, 422, 461, 863, 1353, 1413
HspAI GCGC 1 cut(s) 1417
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 3 cut(s) 631, 1153, 1881
LguI GCTCTTC 2 cut(s) 111, 1053
LmnI GCTCC 2 cut(s) 1493, 1501
Lsp1109I GCAGC 9 cut(s) 88, 217, 280, 320, 1495, 1673, 1753, 1981, 2102
LweI GCATC 8 cut(s) 427, 698, 769, 1122, 1189, 1249, 1368, 1417
MaeI CTAG 2 cut(s) 522, 1263
MaeIII GTNAC 4 cut(s) 164, 185, 1667, 2079
MalI GATC 3 cut(s) 633, 1155, 1883
MboI GATC 3 cut(s) 631, 1153, 1881
MfeI CAATTG 2 cut(s) 1104, 2018
MflI RGATCY 2 cut(s) 1153, 1881
MhlI GDGCHC 4 cut(s) 616, 1498, 1574, 2122
MlsI TGGCCA 1 cut(s) 345
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 1488
Mox20I TGGCCA 1 cut(s) 345
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 4 cut(s) 138, 224, 1068, 2105
MscI TGGCCA 1 cut(s) 345
MseI TTAA 6 cut(s) 450, 593, 1127, 1173, 1946, 2010
MslI CAYNNNNRTG 6 cut(s) 557, 619, 639, 924, 1641, 1806
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 5 cut(s) 98, 105, 366, 787, 1906
MspR9I CCNGG 6 cut(s) 98, 176, 661, 1250, 1480, 1620
MssI GTTTAAAC 1 cut(s) 594
MunI CAATTG 2 cut(s) 1104, 2018
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 5 cut(s) 176, 661, 1250, 1480, 1620
MwoI GCNNNNNNNGC 5 cut(s) 293, 362, 915, 1259, 1286
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 2 cut(s) 70, 952
NdeI CATATG 2 cut(s) 277, 1205
NdeII GATC 3 cut(s) 631, 1153, 1881
NgoMIV GCCGGC 1 cut(s) 104
NlaIV GGNNCC 4 cut(s) 370, 519, 580, 838
NmeAIII GCCGAG 1 cut(s) 1990
NmuCI GTSAC 2 cut(s) 164, 185
NspI RCATGY 3 cut(s) 562, 1668, 1684
OliI CACNNNNGTG 2 cut(s) 619, 1806
PaeI GCATGC 1 cut(s) 562
PaeR7I CTCGAG 1 cut(s) 1535
PasI CCCWGGG 1 cut(s) 1619
PciSI GCTCTTC 2 cut(s) 111, 1053
PctI GAATGC 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 4 cut(s) 138, 224, 1068, 2105
PfeI GAWTC 5 cut(s) 238, 625, 718, 1409, 1719
PflMI CCANNNNNTGG 1 cut(s) 1466
PinAI ACCGGT 1 cut(s) 1905
PkrI GCNGC 9 cut(s) 103, 207, 295, 310, 1485, 1663, 1768, 1996, 2092
PleI GAGTC 1 cut(s) 179
PmeI GTTTAAAC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 578
PshBI ATTAAT 2 cut(s) 1946, 2010
Psp124BI GAGCTC 1 cut(s) 1498
Psp5II RGGWCCY 1 cut(s) 578
Psp6I CCWGG 5 cut(s) 174, 659, 1248, 1478, 1618
PspGI CCWGG 5 cut(s) 174, 659, 1248, 1478, 1618
PspN4I GGNNCC 4 cut(s) 370, 519, 580, 838
PspPI GGNCC 5 cut(s) 368, 517, 578, 836, 1020
PspPPI RGGWCCY 1 cut(s) 578
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 2 cut(s) 211, 2050
PsuI RGATCY 2 cut(s) 1153, 1881
RsaI GTAC 6 cut(s) 274, 538, 878, 915, 1320, 1873
RsaNI GTAC 6 cut(s) 273, 537, 877, 914, 1319, 1872
RseI CAYNNNNRTG 6 cut(s) 557, 619, 639, 924, 1641, 1806
SacI GAGCTC 1 cut(s) 1498
SapI GCTCTTC 2 cut(s) 111, 1053
SaqAI TTAA 6 cut(s) 450, 593, 1127, 1173, 1946, 2010
SatI GCNGC 9 cut(s) 102, 206, 294, 309, 1484, 1662, 1767, 1995, 2091
Sau3AI GATC 3 cut(s) 631, 1153, 1881
Sau96I GGNCC 5 cut(s) 368, 517, 578, 836, 1020
ScaI AGTACT 1 cut(s) 1320
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 6 cut(s) 98, 176, 661, 1250, 1480, 1620
SduI GDGCHC 4 cut(s) 616, 1498, 1574, 2122
SfaNI GCATC 8 cut(s) 427, 698, 769, 1122, 1189, 1249, 1368, 1417
SfcI CTRYAG 1 cut(s) 438
Sfr274I CTCGAG 1 cut(s) 1535
SinI GGWCC 2 cut(s) 368, 578
SlaI CTCGAG 1 cut(s) 1535
SmiMI CAYNNNNRTG 6 cut(s) 557, 619, 639, 924, 1641, 1806
SmlI CTYRAG 2 cut(s) 1535, 1823
SmoI CTYRAG 2 cut(s) 1535, 1823
SphI GCATGC 1 cut(s) 562
SsiI CCGC 1 cut(s) 291
SspMI CTAG 2 cut(s) 522, 1263
SstI GAGCTC 1 cut(s) 1498
StyD4I CCNGG 6 cut(s) 96, 174, 659, 1248, 1478, 1618
StyI CCWWGG 3 cut(s) 70, 390, 952
TaaI ACNGT 3 cut(s) 272, 476, 994
TaqI TCGA 5 cut(s) 93, 199, 1536, 1641, 1910
TatI WGTACW 5 cut(s) 272, 536, 876, 1318, 1871
TfiI GAWTC 5 cut(s) 238, 625, 718, 1409, 1719
Tru1I TTAA 6 cut(s) 450, 593, 1127, 1173, 1946, 2010
Tru9I TTAA 6 cut(s) 450, 593, 1127, 1173, 1946, 2010
TscAI CASTG 2 cut(s) 1306, 1361
TseFI GTSAC 2 cut(s) 164, 185
TseI GCWGC 9 cut(s) 101, 205, 293, 308, 1483, 1661, 1766, 1994, 2090
Tsp45I GTSAC 2 cut(s) 164, 185
TspRI CASTG 2 cut(s) 1306, 1361
Van91I CCANNNNNTGG 1 cut(s) 1466
VneI GTGCAC 1 cut(s) 1570
VpaK11BI GGWCC 2 cut(s) 368, 578
VspI ATTAAT 2 cut(s) 1946, 2010
XagI CCTNNNNNAGG 1 cut(s) 1896
XapI RAATTY 4 cut(s) 897, 1337, 1529, 1912
XceI RCATGY 3 cut(s) 562, 1668, 1684
XhoI CTCGAG 1 cut(s) 1535
XmiI GTMKAC 1 cut(s) 565
XmnI GAANNNNTTC 4 cut(s) 138, 224, 1068, 2105
XspI CTAG 2 cut(s) 522, 1263
ZrmI AGTACT 1 cut(s) 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.