RLG00000020351

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000173
Physical Location & Seq
Forward (+)
64000809 .. 64006970
6162 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020351

Sequence Viewer

Length: 2289 bp
ATGTGGAAACTTAGATTTGGAGACGAAGGTGCAAATAATGACCCTTACTTGTTCAGCACAAACAACTTCCATGGGAGGCAAACATGGGAGTTCGACCCGGCTGCCGGCACACCTGAAGAGCGAGCAGAGGTCGAAGAAGTTAGGCTAAGTTTTTACAACAATCGTCACCAGGTCCAGGCTTGTAGTGACCTCCTCTGCCGAATGCAGCTTCTGGGAGAGAAAAAGTTCAAACAAAAGATTCCCCAAGTAAAGGTGGAGGATGGTGAGGACTGTACATATGAAAAGGCCACCGCTGCATTCACAAGGGCAGCTACCTTCTACTCTGCCTTGCAATCACCTCACGGCCATTGGCCTGCTGAAATTGCCGGTCCCATGTTTTATATTCCTTCCTTGGTCATACCGCTCTATATTATGGGGCATCTTAGTAAGGTGTTCTCTGCAGAGCATTATAAGGAAATGCTTAGATATATATACTGTCATCAGAACAAGGATGGTGGGTGGGGATTACACATACAGGCCCCTAGTATGATGTATTGTACACTTCTGAACTACATTTGCATGCGTCTACTTGGAGAAGGACCTGATGGTGGTTTAAACAACGCTTGTGCAAGAGCACGCAAGTGGATTCTTGATCATGGTGGTGCAACACATTCATCATCCTGGGGAAAGACTTTTATGGCAATACTCGGTGTGTATGAGTGGGAGGGATGCAACCCGATTCCCCCAGAGTTTTGGATTGTCCCGTCTATGTTCCCTGTGCATCCAGCAAAAATGTACTGCTACTGCCGGTTGACTTACTTGCCTATGTCGTATCTGTTTGGGAAAAGATTTGTTGGCCCCATCACCCCTCTCATTCTACAACTGAGAGAAGAAATGTACAATGAACCATACAATGAAATTCAATGGGGCAAAGTACGCCATCTCTGTGCAAAGGAGGATAACTACTATCCCCATGGCAAGTTACAATGTTTGTTGTGGGATACTCTTAACACAGTTTATGAGCCTCTTCTTTCTTGCTGGCCCTTCAATAAGTTGAGAGAGAAGGCTCTTCAAGAAGCTATTGAACACATTCATTATGAAGATGAAAATAGTAGATACATAACTATTGGATGTGTGGAAAAGCCATTAATGATGCTTGCTTGCTGGATTGAAGATCCGAATGGAGAATCCTTTAAGAAGCATCTTGCAAGAGTTATAGATTACATATGGGTTGCAGAAGATGGAATAACTACGCAGATTTTTGGAAGCCAGGCATGGGATGCTAGTCTTTCTGTTCAAGCTTTGCTTGCTGGAAATCTCACTGATGAACTTGGATCTGTACTTCAGAAAGCACATGAATTCCTAAAAAAATCTCAGGTTAGGGATAATCCTTCTGGTGACTTCTTAGCTCGTTTCCGTCACATTTCTAAAGGTGGTTGGACTTTCTCTGACCAAGATCATGGATGGCAAGTTTCTGATTGTACTGCAGAGGGTTTGAAGTGTTGCCTATTGTTTTCAATGATGCCGACGGAAATCGTGGGTGAACCAATTGACTCTGAGCGCTTATATGATGCTGTCAATGTCATACTTTCTCTGCAAAATTCAAATGGTGGTGTATCAGCCTGGCAGCCAACAGGAGCTCCACAATGGTTGGAGTGGTTCAATCCAGTAGAATTTCTCGAGAATGTCGTCATTGAATACGAGTATGTTGAGTGCACTTCATCTTCAATTCAAGCGTTAGCTTTATTCAGGAAGTTATACCCTGGGCATAGAAAGAAACATATCGATGATTTCATCACAAATGCAGCATGTTACCTTGAAGACATGCAGACACCTGATGGCTCATGGTATGGAAAATGGGGAATCTGCTTCATCTATGGAACATGGTTTGCAATTATAGGGTTGAAGGCTGCTGGTAGAAGTTACAAAAATTGTGAGGCGATACGCAGAGGTGTTGAATTTTTACTCAAAATACAGAGAAATGATGGTGGTTGGGGAGAGAGCTATACTTCTTGTACAAACAAGATCTATACACCTCTTGAAGGCGAACGGTCGAATTTGGTGCAGACTGCAATGGGACTAATGGGATTAATTCATGGTGGACAGGCCGAGAGAGACCCTACTCCCATTCACAGAGCTGCGAAGCTTTTGATTAATTCTCAATTGGAAAATGGAGATTTCCCCCAACAGGAACTGATGGGGATTTTCAATGTTAATGCCATGTTACACTATGCAGCATACAGGAATATCTTCCCAATTTGGGCTCTCGGAGAATATAGTTCCCTTCCCTCCTTCTGGATAGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

763

Amino Acids

87.05

Weight (kDa)

5.72

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 102 - 363 4.1e-38 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 416 - 753 2e-48 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AccBSI CCGCTC 1 cut(s) 403
AccI GTMKAC 1 cut(s) 565
AciI CCGC 2 cut(s) 291, 401
AclWI GGATC 2 cut(s) 1148, 1321
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 6 cut(s) 897, 1337, 1579, 1652, 1937, 2035
AcuI CTGAAG 2 cut(s) 135, 1307
AfaI GTAC 8 cut(s) 274, 538, 776, 878, 915, 1320, 1462, 1996
AfeI AGCGCT 1 cut(s) 1541
AfiI CCNNNNNNNGG 9 cut(s) 104, 175, 250, 587, 1255, 2021, 2167, 2239, 2274
AjnI CCWGG 6 cut(s) 168, 174, 659, 1248, 1601, 1741
AleI CACNNNNGTG 1 cut(s) 619
Alw21I GWGCWC 3 cut(s) 616, 1621, 1697
Alw26I GTCTC 2 cut(s) 15, 2088
Alw44I GTGCAC 1 cut(s) 1693
AlwI GGATC 2 cut(s) 1148, 1321
AlwNI CAGNNNCTG 2 cut(s) 211, 2173
Ama87I CYCGRG 1 cut(s) 1658
Aor51HI AGCGCT 1 cut(s) 1541
AoxI GGCC 7 cut(s) 285, 343, 350, 516, 835, 1019, 2085
ApaLI GTGCAC 1 cut(s) 1693
ApeKI GCWGC 9 cut(s) 101, 205, 293, 308, 1606, 1784, 1889, 2117, 2213
ApoI RAATTY 6 cut(s) 897, 1337, 1579, 1652, 1937, 2035
AseI ATTAAT 3 cut(s) 1127, 2069, 2133
Asp700I GAANNNNTTC 3 cut(s) 224, 1068, 2228
AspLEI GCGC 1 cut(s) 1542
AspS9I GGNCC 6 cut(s) 172, 368, 517, 578, 836, 1020
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 6 cut(s) 158, 275, 327, 835, 1388, 1532
AvaI CYCGRG 1 cut(s) 1658
AvaII GGWCC 3 cut(s) 172, 368, 578
BaeGI GKGCMC 1 cut(s) 1697
BanII GRGCYC 2 cut(s) 1621, 2245
BbsI GAAGAC 1 cut(s) 1806
Bbv12I GWGCWC 3 cut(s) 616, 1621, 1697
BbvI GCAGC 9 cut(s) 88, 217, 280, 320, 1618, 1796, 1876, 2104, 2225
BceAI ACGGC 1 cut(s) 358
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 2023, 2057
BciT130I CCWGG 6 cut(s) 170, 176, 661, 1250, 1603, 1743
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 15, 2088
BfaI CTAG 2 cut(s) 522, 1263
BfmI CTRYAG 2 cut(s) 438, 1464
BfoI RGCGCY 1 cut(s) 1543
BfuI GTATCC 1 cut(s) 973
BglII AGATCT 1 cut(s) 2004
BisI GCNGC 9 cut(s) 102, 206, 294, 309, 1607, 1785, 1890, 2118, 2214
BlsI GCNGC 9 cut(s) 103, 207, 295, 310, 1608, 1786, 1891, 2119, 2215
Bme1390I CCNGG 7 cut(s) 98, 170, 176, 661, 1250, 1603, 1743
Bme18I GGWCC 3 cut(s) 172, 368, 578
BmeT110I CYCGRG 1 cut(s) 1658
BmgT120I GGNCC 6 cut(s) 172, 368, 517, 578, 836, 1020
BmiI GGNNCC 3 cut(s) 370, 519, 838
BmrFI CCNGG 7 cut(s) 98, 170, 176, 661, 1250, 1603, 1743
BmsI GCATC 8 cut(s) 427, 698, 769, 1122, 1189, 1249, 1491, 1540
BpiI GAAGAC 1 cut(s) 1806
BpuMI CCSGG 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 1764
BsaI GGTCTC 1 cut(s) 2088
BsaJI CCNNGG 6 cut(s) 70, 390, 660, 952, 1741, 1742
BsaXI ACNNNNNCTCC 2 cut(s) 1603, 1633
Bsc4I CCNNNNNNNGG 9 cut(s) 104, 175, 250, 587, 1255, 2021, 2167, 2239, 2274
Bse118I RCCGGY 3 cut(s) 104, 365, 786
Bse1I ACTGG 1 cut(s) 1646
Bse3DI GCAATG 1 cut(s) 2058
BseBI CCWGG 6 cut(s) 170, 176, 661, 1250, 1603, 1743
BseCI ATCGAT 1 cut(s) 1764
BseDI CCNNGG 6 cut(s) 70, 390, 660, 952, 1741, 1742
BseGI GGATG 8 cut(s) 265, 496, 656, 713, 760, 1115, 1264, 1448
BseLI CCNNNNNNNGG 9 cut(s) 104, 175, 250, 587, 1255, 2021, 2167, 2239, 2274
BseMI GCAATG 1 cut(s) 2058
BseMII CTCAG 3 cut(s) 854, 1367, 1527
BseNI ACTGG 1 cut(s) 1646
BseRI GAGGAG 1 cut(s) 182
BseSI GKGCMC 1 cut(s) 1697
BseXI GCAGC 9 cut(s) 88, 217, 280, 320, 1618, 1796, 1876, 2104, 2225
BsgI GTGCAG 1 cut(s) 2063
Bsh1285I CGRYCG 1 cut(s) 2033
BshFI GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 2087
BshVI ATCGAT 1 cut(s) 1764
BsiEI CGRYCG 1 cut(s) 2033
BsiHKAI GWGCWC 3 cut(s) 616, 1621, 1697
BsiHKCI CYCGRG 1 cut(s) 1658
BsiSI CCGG 4 cut(s) 98, 105, 366, 787
BslFI GGGAC 3 cut(s) 354, 725, 2070
BslI CCNNNNNNNGG 9 cut(s) 104, 175, 250, 587, 1255, 2021, 2167, 2239, 2274
BsmAI GTCTC 2 cut(s) 15, 2088
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 3 cut(s) 354, 725, 2070
BsmI GAATGC 2 cut(s) 207, 296
BsnI GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 2087
Bso31I GGTCTC 1 cut(s) 2088
BsoBI CYCGRG 1 cut(s) 1658
Bsp1286I GDGCHC 4 cut(s) 616, 1621, 1697, 2245
Bsp1407I TGTACA 4 cut(s) 272, 536, 876, 1994
Bsp143I GATC 5 cut(s) 631, 1153, 1313, 1435, 2004
Bsp19I CCATGG 2 cut(s) 70, 952
BspACI CCGC 2 cut(s) 291, 401
BspANI GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 2087
BspCNI CTCAG 3 cut(s) 855, 1366, 1528
BspDI ATCGAT 1 cut(s) 1764
BspLI GGNNCC 3 cut(s) 370, 519, 838
BspMAI CTGCAG 2 cut(s) 442, 1468
BspPI GGATC 2 cut(s) 1148, 1321
BspQI GCTCTTC 2 cut(s) 111, 1053
BspTNI GGTCTC 1 cut(s) 2088
BsrBI CCGCTC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 2058
BsrFI RCCGGY 3 cut(s) 104, 365, 786
BsrGI TGTACA 4 cut(s) 272, 536, 876, 1994
BsrI ACTGG 1 cut(s) 1646
BssAI RCCGGY 3 cut(s) 104, 365, 786
BssECI CCNNGG 6 cut(s) 70, 390, 660, 952, 1741, 1742
BssMI GATC 5 cut(s) 631, 1153, 1313, 1435, 2004
BssT1I CCWWGG 3 cut(s) 70, 390, 952
Bst2UI CCWGG 6 cut(s) 170, 176, 661, 1250, 1603, 1743
Bst4CI ACNGT 4 cut(s) 272, 476, 994, 2031
Bst6I CTCTTC 3 cut(s) 111, 1011, 1053
BstAPI GCANNNNNTGC 1 cut(s) 1259
BstAUI TGTACA 4 cut(s) 272, 536, 876, 1994
BstC8I GCNNGC 9 cut(s) 106, 123, 354, 560, 616, 1019, 1137, 1141, 1287
BstDEI CTNAG 8 cut(s) 11, 146, 422, 461, 863, 1353, 1384, 1536
BstDSI CCRYGG 2 cut(s) 70, 952
BstENI CCTNNNNNAGG 1 cut(s) 2019
BstF5I GGATG 8 cut(s) 265, 496, 656, 713, 760, 1115, 1264, 1448
BstH2I RGCGCY 1 cut(s) 1543
BstHHI GCGC 1 cut(s) 1542
BstKTI GATC 5 cut(s) 634, 1156, 1316, 1438, 2007
BstMAI GTCTC 2 cut(s) 15, 2088
BstMBI GATC 5 cut(s) 631, 1153, 1313, 1435, 2004
BstMCI CGRYCG 1 cut(s) 2033
BstMWI GCNNNNNNNGC 5 cut(s) 293, 362, 915, 1259, 1286
BstNI CCWGG 6 cut(s) 170, 176, 661, 1250, 1603, 1743
BstNSI RCATGY 3 cut(s) 562, 1791, 1807
BstSCI CCNGG 7 cut(s) 96, 168, 174, 659, 1248, 1601, 1741
BstSFI CTRYAG 2 cut(s) 438, 1464
BstSLI GKGCMC 1 cut(s) 1697
BstV1I GCAGC 9 cut(s) 88, 217, 280, 320, 1618, 1796, 1876, 2104, 2225
BstV2I GAAGAC 1 cut(s) 1806
BstX2I RGATCY 3 cut(s) 1153, 1313, 2004
BstXI CCANNNNNNTGG 2 cut(s) 732, 1439
BstYI RGATCY 3 cut(s) 1153, 1313, 2004
Bsu15I ATCGAT 1 cut(s) 1764
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 2087
BsuTUI ATCGAT 1 cut(s) 1764
BtgI CCRYGG 2 cut(s) 70, 952
BtsCI GGATG 8 cut(s) 265, 496, 656, 713, 760, 1115, 1264, 1448
BtsIMutI CAGTG 1 cut(s) 1299
Cac8I GCNNGC 9 cut(s) 106, 123, 354, 560, 616, 1019, 1137, 1141, 1287
CaiI CAGNNNCTG 2 cut(s) 211, 2173
CfoI GCGC 1 cut(s) 1542
Cfr10I RCCGGY 3 cut(s) 104, 365, 786
Cfr13I GGNCC 6 cut(s) 172, 368, 517, 578, 836, 1020
ClaI ATCGAT 1 cut(s) 1764
CseI GACGC 1 cut(s) 551
CsiI ACCWGGT 1 cut(s) 168
Csp6I GTAC 8 cut(s) 273, 537, 775, 877, 914, 1319, 1461, 1995
CspCI CAANNNNNGTGG 4 cut(s) 475, 510, 1611, 1646
CviQI GTAC 8 cut(s) 273, 537, 775, 877, 914, 1319, 1461, 1995
DdeI CTNAG 8 cut(s) 11, 146, 422, 461, 863, 1353, 1384, 1536
DpnI GATC 5 cut(s) 633, 1155, 1315, 1437, 2006
DpnII GATC 5 cut(s) 631, 1153, 1313, 1435, 2004
DraI TTTAAA 1 cut(s) 594
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 3 cut(s) 111, 1011, 1053
EarI CTCTTC 3 cut(s) 111, 1011, 1053
Ecl136II GAGCTC 1 cut(s) 1619
Eco130I CCWWGG 3 cut(s) 70, 390, 952
Eco24I GRGCYC 2 cut(s) 1621, 2245
Eco31I GGTCTC 1 cut(s) 2088
Eco47I GGWCC 3 cut(s) 172, 368, 578
Eco47III AGCGCT 1 cut(s) 1541
Eco53kI GAGCTC 1 cut(s) 1619
Eco57I CTGAAG 2 cut(s) 135, 1307
Eco88I CYCGRG 1 cut(s) 1658
EcoICRI GAGCTC 1 cut(s) 1619
EcoNI CCTNNNNNAGG 1 cut(s) 2019
EcoO109I RGGNCCY 2 cut(s) 517, 578
EcoRI GAATTC 1 cut(s) 1337
EcoRII CCWGG 6 cut(s) 168, 174, 659, 1248, 1601, 1741
EcoT14I CCWWGG 3 cut(s) 70, 390, 952
EcoT38I GRGCYC 2 cut(s) 1621, 2245
ErhI CCWWGG 3 cut(s) 70, 390, 952
Esp3I CGTCTC 1 cut(s) 15
FalI AAGNNNNNCTT 2 cut(s) 1269, 1301
FaqI GGGAC 3 cut(s) 354, 725, 2070
FauNDI CATATG 2 cut(s) 277, 1205
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 9 cut(s) 102, 206, 294, 309, 1607, 1785, 1890, 2118, 2214
FokI GGATG 8 cut(s) 272, 503, 643, 720, 747, 1122, 1271, 1455
FriOI GRGCYC 2 cut(s) 1621, 2245
Fsp4HI GCNGC 9 cut(s) 102, 206, 294, 309, 1607, 1785, 1890, 2118, 2214
FspBI CTAG 2 cut(s) 522, 1263
GlaI GCGC 1 cut(s) 1541
GluI GCNGC 9 cut(s) 102, 206, 294, 309, 1607, 1785, 1890, 2118, 2214
HaeII RGCGCY 1 cut(s) 1543
HaeIII GGCC 7 cut(s) 287, 345, 352, 518, 837, 1021, 2087
HapII CCGG 4 cut(s) 98, 105, 366, 787
HgaI GACGC 1 cut(s) 551
HhaI GCGC 1 cut(s) 1542
Hin6I GCGC 1 cut(s) 1540
HinP1I GCGC 1 cut(s) 1540
HincII GTYRAC 1 cut(s) 792
HindII GTYRAC 1 cut(s) 792
HindIII AAGCTT 2 cut(s) 1278, 2123
HinfI GANTC 6 cut(s) 238, 625, 718, 1166, 1532, 1842
HpaII CCGG 4 cut(s) 98, 105, 366, 787
HphI GGTGA 6 cut(s) 158, 275, 327, 835, 1388, 1532
Hpy166II GTNNAC 6 cut(s) 539, 566, 792, 1523, 1695, 2081
Hpy188I TCNGA 8 cut(s) 483, 546, 1158, 1326, 1429, 1456, 1537, 2249
Hpy188III TCNNGA 7 cut(s) 629, 1052, 1658, 1660, 1729, 2018, 2275
Hpy8I GTNNAC 6 cut(s) 539, 566, 792, 1523, 1695, 2081
Hpy99I CGWCG 1 cut(s) 1510
HpyCH4III ACNGT 4 cut(s) 272, 476, 994, 2031
HpyF10VI GCNNNNNNNGC 5 cut(s) 293, 362, 915, 1259, 1286
HpyF3I CTNAG 8 cut(s) 11, 146, 422, 461, 863, 1353, 1384, 1536
HspAI GCGC 1 cut(s) 1540
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 5 cut(s) 631, 1153, 1313, 1435, 2004
LguI GCTCTTC 2 cut(s) 111, 1053
LmnI GCTCC 2 cut(s) 1616, 1624
Lsp1109I GCAGC 9 cut(s) 88, 217, 280, 320, 1618, 1796, 1876, 2104, 2225
LweI GCATC 8 cut(s) 427, 698, 769, 1122, 1189, 1249, 1491, 1540
MabI ACCWGGT 1 cut(s) 168
MaeI CTAG 2 cut(s) 522, 1263
MaeIII GTNAC 8 cut(s) 164, 185, 960, 1376, 1397, 1790, 1901, 2202
MalI GATC 5 cut(s) 633, 1155, 1315, 1437, 2006
MbiI CCGCTC 1 cut(s) 403
MboI GATC 5 cut(s) 631, 1153, 1313, 1435, 2004
MfeI CAATTG 2 cut(s) 1527, 2141
MflI RGATCY 3 cut(s) 1153, 1313, 2004
MhlI GDGCHC 4 cut(s) 616, 1621, 1697, 2245
MlyI GAGTC 1 cut(s) 1526
MmeI TCCRAC 2 cut(s) 1397, 1611
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 3 cut(s) 224, 1068, 2228
MseI TTAA 7 cut(s) 593, 987, 1127, 1173, 2069, 2133, 2193
MslI CAYNNNNRTG 5 cut(s) 557, 619, 639, 924, 1764
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 4 cut(s) 98, 105, 366, 787
MspR9I CCNGG 7 cut(s) 98, 170, 176, 661, 1250, 1603, 1743
MssI GTTTAAAC 1 cut(s) 594
MunI CAATTG 2 cut(s) 1527, 2141
Mva1269I GAATGC 2 cut(s) 207, 296
MvaI CCWGG 6 cut(s) 170, 176, 661, 1250, 1603, 1743
MwoI GCNNNNNNNGC 5 cut(s) 293, 362, 915, 1259, 1286
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 2 cut(s) 70, 952
NdeI CATATG 2 cut(s) 277, 1205
NdeII GATC 5 cut(s) 631, 1153, 1313, 1435, 2004
NgoMIV GCCGGC 1 cut(s) 104
NlaIV GGNNCC 3 cut(s) 370, 519, 838
NmeAIII GCCGAG 1 cut(s) 2113
NmuCI GTSAC 4 cut(s) 164, 185, 1376, 1397
NspI RCATGY 3 cut(s) 562, 1791, 1807
OliI CACNNNNGTG 1 cut(s) 619
PaeI GCATGC 1 cut(s) 562
PaeR7I CTCGAG 1 cut(s) 1658
PasI CCCWGGG 1 cut(s) 1742
PciSI GCTCTTC 2 cut(s) 111, 1053
PcsI WCGNNNNNNNCGW 1 cut(s) 1665
PctI GAATGC 2 cut(s) 207, 296
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 3 cut(s) 224, 1068, 2228
PfeI GAWTC 5 cut(s) 238, 625, 718, 1166, 1842
PkrI GCNGC 9 cut(s) 103, 207, 295, 310, 1608, 1786, 1891, 2119, 2215
PleI GAGTC 1 cut(s) 1526
PmeI GTTTAAAC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 1526
PpuMI RGGWCCY 1 cut(s) 578
PshBI ATTAAT 3 cut(s) 1127, 2069, 2133
PsiI TTATAA 1 cut(s) 450
Psp124BI GAGCTC 1 cut(s) 1621
Psp5II RGGWCCY 1 cut(s) 578
Psp6I CCWGG 6 cut(s) 168, 174, 659, 1248, 1601, 1741
PspGI CCWGG 6 cut(s) 168, 174, 659, 1248, 1601, 1741
PspN4I GGNNCC 3 cut(s) 370, 519, 838
PspPI GGNCC 6 cut(s) 172, 368, 517, 578, 836, 1020
PspPPI RGGWCCY 1 cut(s) 578
PstI CTGCAG 2 cut(s) 442, 1468
PstNI CAGNNNCTG 2 cut(s) 211, 2173
PsuI RGATCY 3 cut(s) 1153, 1313, 2004
RsaI GTAC 8 cut(s) 274, 538, 776, 878, 915, 1320, 1462, 1996
RsaNI GTAC 8 cut(s) 273, 537, 775, 877, 914, 1319, 1461, 1995
RseI CAYNNNNRTG 5 cut(s) 557, 619, 639, 924, 1764
SacI GAGCTC 1 cut(s) 1621
SapI GCTCTTC 2 cut(s) 111, 1053
SaqAI TTAA 7 cut(s) 593, 987, 1127, 1173, 2069, 2133, 2193
SatI GCNGC 9 cut(s) 102, 206, 294, 309, 1607, 1785, 1890, 2118, 2214
Sau3AI GATC 5 cut(s) 631, 1153, 1313, 1435, 2004
Sau96I GGNCC 6 cut(s) 172, 368, 517, 578, 836, 1020
SchI GAGTC 1 cut(s) 1526
ScrFI CCNGG 7 cut(s) 98, 170, 176, 661, 1250, 1603, 1743
SduI GDGCHC 4 cut(s) 616, 1621, 1697, 2245
SexAI ACCWGGT 1 cut(s) 168
SfaNI GCATC 8 cut(s) 427, 698, 769, 1122, 1189, 1249, 1491, 1540
SfcI CTRYAG 2 cut(s) 438, 1464
Sfr274I CTCGAG 1 cut(s) 1658
SinI GGWCC 3 cut(s) 172, 368, 578
SlaI CTCGAG 1 cut(s) 1658
SmiMI CAYNNNNRTG 5 cut(s) 557, 619, 639, 924, 1764
SmlI CTYRAG 1 cut(s) 1658
SmoI CTYRAG 1 cut(s) 1658
SphI GCATGC 1 cut(s) 562
SsiI CCGC 2 cut(s) 291, 401
SspMI CTAG 2 cut(s) 522, 1263
SstI GAGCTC 1 cut(s) 1621
StyD4I CCNGG 7 cut(s) 96, 168, 174, 659, 1248, 1601, 1741
StyI CCWWGG 3 cut(s) 70, 390, 952
TaaI ACNGT 4 cut(s) 272, 476, 994, 2031
TaqI TCGA 5 cut(s) 93, 132, 1659, 1764, 2033
TatI WGTACW 7 cut(s) 272, 536, 774, 876, 1318, 1460, 1994
TfiI GAWTC 5 cut(s) 238, 625, 718, 1166, 1842
Tru1I TTAA 7 cut(s) 593, 987, 1127, 1173, 2069, 2133, 2193
Tru9I TTAA 7 cut(s) 593, 987, 1127, 1173, 2069, 2133, 2193
TscAI CASTG 1 cut(s) 1306
TseFI GTSAC 4 cut(s) 164, 185, 1376, 1397
TseI GCWGC 9 cut(s) 101, 205, 293, 308, 1606, 1784, 1889, 2117, 2213
Tsp45I GTSAC 4 cut(s) 164, 185, 1376, 1397
TspGWI ACGGA 2 cut(s) 1385, 1523
TspRI CASTG 1 cut(s) 1306
VneI GTGCAC 1 cut(s) 1693
VpaK11BI GGWCC 3 cut(s) 172, 368, 578
VspI ATTAAT 3 cut(s) 1127, 2069, 2133
XagI CCTNNNNNAGG 1 cut(s) 2019
XapI RAATTY 6 cut(s) 897, 1337, 1579, 1652, 1937, 2035
XceI RCATGY 3 cut(s) 562, 1791, 1807
XhoI CTCGAG 1 cut(s) 1658
XmiI GTMKAC 1 cut(s) 565
XmnI GAANNNNTTC 3 cut(s) 224, 1068, 2228
XspI CTAG 2 cut(s) 522, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.