ATMG00860

3-hydroxyisobutyryl-CoA hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0000291
Physical Location & Seq
Forward (+)
235916 .. 236392
477 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00860.1

Sequence Viewer

Length: 477 bp
ATGAATCACTTGGGAATGGTGCTCCAGATTTGGGAACAACACCAGTTTTATGCAAACAGAAAGAAGTGTGCTTTTGGACAACCACAGATTGCATATTTGGGACATAGACATATTATATCGGGCGAAGGGGTGTCAGCTGATCCAGCTAAGTTAGAAGCAATGGTGGGTTGGCCAGAACCAAAGAACACAACAGAATTGCGAGGCTTCTTGGGCTTGACGGGGTACTACAGGAGATTCGTTAAGAATTATGGGAAAATTGTGAGACCGTTGACCGAGTTACTCAAAAAGAACAGTTTAAAATGGACAGAAATGGCAGCACTAGCTTTCAAGGCTCTCAAAGGAGCAGTGACGACGCTTCCTGTTCTAGCCTTGCCAGATTTGAAGCTACCTTTTGTGACCCGCGTCGGGAAATGGAATTGGAGCTGTTTTATTACAAGGGAACAGGCCTGTTGCGTATCTCAGCCAAGGGTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

158

Amino Acids

17.98

Weight (kDa)

9.85

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 402
AciI CCGC 1 cut(s) 400
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 170
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 31, 405
AgsI TTSAA 2 cut(s) 328, 382
AluBI AGCT 5 cut(s) 137, 146, 323, 385, 423
AluI AGCT 5 cut(s) 137, 146, 323, 385, 423
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 1 cut(s) 134
AoxI GGCC 2 cut(s) 170, 444
ApeKI GCWGC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 2 cut(s) 320, 365
BfmI CTRYAG 1 cut(s) 226
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BoxI GACNNNNGTC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 464
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 405
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 464
BseLI CCNNNNNNNGG 2 cut(s) 31, 405
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 402
BshFI GGCC 2 cut(s) 172, 446
BsiHKAI GWGCWC 1 cut(s) 24
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 31, 405
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 172, 446
Bso31I GGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 1 cut(s) 400
BspANI GGCC 2 cut(s) 172, 446
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 1 cut(s) 402
BspPI GGATC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 267, 293
BstDEI CTNAG 2 cut(s) 147, 459
BstFNI CGCG 1 cut(s) 402
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 4 cut(s) 143, 210, 320, 329
BstPAI GACNNNNGTC 1 cut(s) 401
BstSFI CTRYAG 1 cut(s) 226
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 326
BsuRI GGCC 2 cut(s) 172, 446
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
CseI GACGC 2 cut(s) 361, 391
Csp6I GTAC 1 cut(s) 223
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 147, 459
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
DraI TTTAAA 1 cut(s) 297
EaeI YGGCCR 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 464
Eco147I AGGCCT 1 cut(s) 446
Eco31I GGTCTC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
FaiI YATR 6 cut(s) 51, 94, 105, 111, 116, 249
FaqI GGGAC 1 cut(s) 114
FauI CCCGC 1 cut(s) 407
Fnu4HI GCNGC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 320, 365
GluI GCNGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 8
HaeIII GGCC 2 cut(s) 172, 446
HgaI GACGC 2 cut(s) 361, 391
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 2 cut(s) 4, 234
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 1 cut(s) 476
Hpy188III TCNNGA 2 cut(s) 25, 406
Hpy8I GTNNAC 1 cut(s) 270
Hpy99I CGWCG 2 cut(s) 355, 407
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 267, 293
HpyCH4V TGCA 2 cut(s) 53, 92
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 210, 320, 329
HpyF3I CTNAG 2 cut(s) 147, 459
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 3 cut(s) 27, 341, 420
LpnPI CCDG 9 cut(s) 38, 56, 156, 186, 214, 372, 387, 428, 460
Lsp1109I GCAGC 1 cut(s) 326
MaeI CTAG 2 cut(s) 320, 365
MaeIII GTNAC 3 cut(s) 276, 346, 394
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 172
MluCI AATT 4 cut(s) 194, 244, 255, 415
MluNI TGGCCA 1 cut(s) 172
MnlI CCTC 1 cut(s) 194
Mox20I TGGCCA 1 cut(s) 172
MscI TGGCCA 1 cut(s) 172
MseI TTAA 2 cut(s) 240, 296
Msp20I TGGCCA 1 cut(s) 172
MspA1I CMGCKG 1 cut(s) 137
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 4 cut(s) 143, 210, 320, 329
NdeII GATC 1 cut(s) 139
NmuCI GTSAC 2 cut(s) 346, 394
PceI AGGCCT 1 cut(s) 446
PfeI GAWTC 2 cut(s) 4, 234
PkrI GCNGC 1 cut(s) 316
PshAI GACNNNNGTC 1 cut(s) 401
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 2 cut(s) 240, 296
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 24
SetI ASST 6 cut(s) 139, 148, 325, 387, 391, 425
SfcI CTRYAG 1 cut(s) 226
Sse9I AATT 4 cut(s) 194, 244, 255, 415
SseBI AGGCCT 1 cut(s) 446
SsiI CCGC 1 cut(s) 400
SspMI CTAG 2 cut(s) 320, 365
StuI AGGCCT 1 cut(s) 446
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 267, 293
TaqII GACCGA 1 cut(s) 287
TasI AATT 4 cut(s) 194, 244, 255, 415
TfiI GAWTC 2 cut(s) 4, 234
Tru1I TTAA 2 cut(s) 240, 296
Tru9I TTAA 2 cut(s) 240, 296
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 2 cut(s) 346, 394
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 2 cut(s) 346, 394
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 351
XspI CTAG 2 cut(s) 320, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.