Prupe.5G246300_v2.0.a1

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000291
Physical Location & Seq
Forward (+)
18412280 .. 18415117
2838 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G246300.1

Sequence Viewer

Length: 1821 bp
ATGACAATTATGGTACGAGGTGTTGGGAAGGGTTTGAGAATTGATATTCCTGAATTTCATGGCAGCCTTCAACTTGAGGAATTTCTTGATTGGCTTAATTCTGTAGAAGAGGTACTAGAGTTTAAAGATGTTCATGAAAATATAAAAGTTTCCCTTATAGCGACCAGATTTCGTGGGTGTGCTTCGGCATGGTGGCAGCAATTCAAGGCAACCCGTCTGCGGGAGGGAAAAGAGAAGATTGAAACTTGGGAAAAATTGAGAAAGCATATGCGGTCAACCTTTCTACCACCCAATTACTCAAAATTAGTGTATCAACAACTTCAAAATTTGAGACAAGGAAATCATACGGTGGGTGAGTATACCACCGAATTTTATGAGTTGGTGGCTAGAAGTGACCTTGCTGAGACAGATGAGCAGTTAGAATCACGATATATTGGGGGCATGAGGGTGCAGTTTCAAGATACCTTGAACCTCTTCGATCCATTCTCAGTAGCGAAGGCACAACAAAGAGCCTTGCAATTGGAGAAACATATGAGTCGAAAGGCAAATAGTGGAGGGGCTTGGTCTGGAAATAGCCCAAATAACCGTGGTGGAGGAAGCAATTCAGCCCCTTTTCGTGCTTCTACTCCACTAGTTCAGAACCCGAAGTCATTTGTGAGTGATCCCCTCGGCAAGGCACAAACTGTGGGACCCAAACGTACTGCTTTTCGTTGTTTTAAGTGTGGGGAAACTGGACATTGTATGGCAGAATGCAAGAAAAGCGATAGAGTTGGTAAGGGTTTATTCATTGAACATGATGAAAATCAGTTACAAGAGTATCATGATTTCGAACATGGTCCGGTTTATGATAATGAACCCAATGATGTTGTGGAGGAATATATGACCGAGGATGATGGCCCATTGCTCATGGTGAGAAAAACTTGTTTTACTCCTCGTGAAACTGAAGGTAGTGATGGATGGCTTCGCAATAATGTTTTCCAGTCCATTTGTACTATTGGTGGCAAGGTGTGCAAGTTGGTAATTGACCCCGGAAGTTGCGAAAACATAATATCTAAAGAAGCAATCAGGAAATTAGGCTTGGAAACACAACCACATCCCCACCCATATAAGCTTTCATGGCTGCAAAAGGATAAAGTGTGGTGCAATGTTGTGCCGATGGATGCAGGACATATTTTACTGGGTAGACCATGGGAGTTTGATAGAGCTGTTGTGCATGACGGTAGGAAAAATACATATAGCTTCATGCTCAAAAATATTAAAGTTACTCTTTTGCCTACCAAAGAACATCCTAAAGAGCACAAAGAATTGCGTCGTCAAGTGGAGGAATTGCTAGAGAATGGTCATATTAGGCAGAGTATTAGCCCTTGTGCCGTTCCTGCCTTGCTTACACCAACGAAAGATGGCACATGGCGGATGTGTGTACACAGTCGTGCTATTAATAAAATTACGCAAGCTGACCTTAAGAGTGGGTATCCTCAAATTCGGGTTAGAGAAGGAGATGAGTGGAAAACTACATTCAAAACTTGCGAAGGTTTGTATGAGTGGTTAATCATGCCCTTTGGCCTCTCTAATGCACCAAGTACATTCATGAGATCTCTCAAGCACTGGAGTTCGTATCTGGCTCATAATGAATTTATTTTATTCACTGATCATCACCTCAAGCTTCCTAGTCATCTATGTACTGCCGATGTGTTCAATGTCAAACATCACTTTCCTTACCACGGTGATAGTTCTGACGAGGAAGATTTGAATTCGGGGACGAATTCTTCTCAACCTCGGGATGATGATGCAGCACACATCACTCATAATTTTTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag zf-CCHC

Protein Analysis

607

Amino Acids

69.39

Weight (kDa)

6.84

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 359, 1183
AciI CCGC 3 cut(s) 220, 271, 1411
AclWI GGATC 2 cut(s) 473, 656
AcsI RAATTY 8 cut(s) 53, 80, 325, 368, 1479, 1631, 1750, 1762
AcuI CTGAAG 1 cut(s) 963
AfaI GTAC 7 cut(s) 15, 114, 700, 991, 1422, 1582, 1681
AfiI CCNNNNNNNGG 4 cut(s) 219, 220, 673, 1721
AflII CTTAAG 1 cut(s) 1460
AhlI ACTAGT 1 cut(s) 631
AjuI GAANNNNNNNTTGG 2 cut(s) 1061, 1093
AleI CACNNNNGTG 1 cut(s) 1428
AluBI AGCT 5 cut(s) 1111, 1205, 1239, 1454, 1663
AluI AGCT 5 cut(s) 1111, 1205, 1239, 1454, 1663
Alw21I GWGCWC 1 cut(s) 1299
Alw26I GTCTC 2 cut(s) 325, 398
AlwI GGATC 2 cut(s) 473, 656
Ama87I CYCGRG 1 cut(s) 1776
AoxI GGCC 2 cut(s) 895, 1561
ApeKI GCWGC 4 cut(s) 63, 196, 1120, 1790
ApoI RAATTY 8 cut(s) 53, 80, 325, 368, 1479, 1631, 1750, 1762
AseI ATTAAT 1 cut(s) 1437
Asp700I GAANNNNTTC 2 cut(s) 473, 601
AspS9I GGNCC 3 cut(s) 689, 836, 896
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 4 cut(s) 365, 922, 1646, 1736
AsuII TTCGAA 1 cut(s) 828
AvaI CYCGRG 1 cut(s) 1776
AvaII GGWCC 2 cut(s) 689, 836
BaeI ACNNNNGTAYC 4 cut(s) 104, 137, 800, 833
BauI CACGAG 1 cut(s) 933
Bbv12I GWGCWC 1 cut(s) 1299
BbvI GCAGC 4 cut(s) 75, 208, 1107, 1802
BccI CCATC 5 cut(s) 887, 947, 951, 1150, 1394
BceAI ACGGC 1 cut(s) 1355
BciVI GTATCC 1 cut(s) 1482
BclI TGATCA 1 cut(s) 1648
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 2 cut(s) 325, 398
BcuI ACTAGT 1 cut(s) 631
BfaI CTAG 5 cut(s) 116, 387, 632, 1331, 1668
BfmI CTRYAG 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 1460
BfuI GTATCC 1 cut(s) 1482
BglII AGATCT 1 cut(s) 1592
BisI GCNGC 4 cut(s) 64, 197, 1121, 1791
BlsI GCNGC 4 cut(s) 65, 198, 1122, 1792
Bme1390I CCNGG 1 cut(s) 1029
Bme18I GGWCC 2 cut(s) 689, 836
BmeT110I CYCGRG 1 cut(s) 1776
BmgT120I GGNCC 3 cut(s) 689, 836, 896
BmiI GGNNCC 2 cut(s) 690, 691
BmrFI CCNGG 1 cut(s) 1029
BmrI ACTGGG 1 cut(s) 1187
BmsI GCATC 2 cut(s) 1150, 1777
BmuI ACTGGG 1 cut(s) 1187
BpmI CTGGAG 1 cut(s) 1627
Bpu14I TTCGAA 1 cut(s) 828
BpuEI CTTGAG 3 cut(s) 95, 1583, 1643
BpuMI CCSGG 1 cut(s) 1029
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 7 cut(s) 586, 667, 885, 1027, 1187, 1720, 1775
BsaWI WCCGGW 1 cut(s) 838
Bsc4I CCNNNNNNNGG 4 cut(s) 219, 220, 673, 1721
Bse1I ACTGG 4 cut(s) 736, 979, 1182, 1610
Bse3DI GCAATG 2 cut(s) 899, 1150
Bse8I GATNNNNATC 1 cut(s) 801
BseDI CCNNGG 7 cut(s) 586, 667, 885, 1027, 1187, 1720, 1775
BseGI GGATG 7 cut(s) 895, 962, 1093, 1165, 1285, 1419, 1786
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 4 cut(s) 219, 220, 673, 1721
BseMI GCAATG 2 cut(s) 899, 1150
BseMII CTCAG 2 cut(s) 393, 501
BseNI ACTGG 4 cut(s) 736, 979, 1182, 1610
BseRI GAGGAG 1 cut(s) 921
BseXI GCAGC 4 cut(s) 75, 208, 1107, 1802
BsgI GTGCAG 1 cut(s) 470
BshFI GGCC 2 cut(s) 897, 1563
BsiHKAI GWGCWC 1 cut(s) 1299
BsiHKCI CYCGRG 1 cut(s) 1776
BsiSI CCGG 2 cut(s) 839, 1029
BslFI GGGAC 2 cut(s) 702, 1771
BslI CCNNNNNNNGG 4 cut(s) 219, 220, 673, 1721
BsmAI GTCTC 2 cut(s) 325, 398
BsmFI GGGAC 2 cut(s) 702, 1771
BsmI GAATGC 1 cut(s) 755
BsnI GGCC 2 cut(s) 897, 1563
BsoBI CYCGRG 1 cut(s) 1776
Bsp119I TTCGAA 1 cut(s) 828
Bsp1286I GDGCHC 1 cut(s) 1299
Bsp1407I TGTACA 1 cut(s) 1420
Bsp143I GATC 4 cut(s) 478, 661, 1592, 1648
Bsp19I CCATGG 1 cut(s) 1187
BspACI CCGC 3 cut(s) 220, 271, 1411
BspANI GGCC 2 cut(s) 897, 1563
BspCNI CTCAG 2 cut(s) 394, 500
BspHI TCATGA 3 cut(s) 133, 820, 1587
BspLI GGNNCC 2 cut(s) 690, 691
BspPI GGATC 2 cut(s) 473, 656
BspT104I TTCGAA 1 cut(s) 828
BspTI CTTAAG 1 cut(s) 1460
BsrDI GCAATG 2 cut(s) 899, 1150
BsrGI TGTACA 1 cut(s) 1420
BsrI ACTGG 4 cut(s) 736, 979, 1182, 1610
BssECI CCNNGG 7 cut(s) 586, 667, 885, 1027, 1187, 1720, 1775
BssMI GATC 4 cut(s) 478, 661, 1592, 1648
BssNAI GTATAC 1 cut(s) 360
BssSI CACGAG 1 cut(s) 933
BssT1I CCWWGG 1 cut(s) 1187
Bst1107I GTATAC 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 933
Bst4CI ACNGT 6 cut(s) 349, 587, 685, 1220, 1427, 1724
Bst6I CTCTTC 2 cut(s) 102, 479
BstAFI CTTAAG 1 cut(s) 1460
BstAPI GCANNNNNTGC 1 cut(s) 1008
BstAUI TGTACA 1 cut(s) 1420
BstBI TTCGAA 1 cut(s) 828
BstC8I GCNNGC 1 cut(s) 1452
BstDEI CTNAG 2 cut(s) 402, 487
BstDSI CCRYGG 3 cut(s) 586, 1187, 1720
BstENI CCTNNNNNAGG 1 cut(s) 671
BstF5I GGATG 7 cut(s) 895, 962, 1093, 1165, 1285, 1419, 1786
BstKTI GATC 4 cut(s) 481, 664, 1595, 1651
BstMAI GTCTC 2 cut(s) 325, 398
BstMBI GATC 4 cut(s) 478, 661, 1592, 1648
BstMWI GCNNNNNNNGC 4 cut(s) 759, 1008, 1117, 1376
BstSCI CCNGG 1 cut(s) 1027
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 4 cut(s) 75, 208, 1107, 1802
BstX2I RGATCY 1 cut(s) 1592
BstYI RGATCY 1 cut(s) 1592
BstZ17I GTATAC 1 cut(s) 360
BsuI GTATCC 1 cut(s) 1482
BsuRI GGCC 2 cut(s) 897, 1563
BtgI CCRYGG 3 cut(s) 586, 1187, 1720
BtsCI GGATG 7 cut(s) 895, 962, 1093, 1165, 1285, 1419, 1786
BtsIMutI CAGTG 2 cut(s) 1603, 1644
Cac8I GCNNGC 1 cut(s) 1452
CciI TCATGA 3 cut(s) 133, 820, 1587
Cfr13I GGNCC 3 cut(s) 689, 836, 896
CseI GACGC 1 cut(s) 1298
Csp6I GTAC 7 cut(s) 14, 113, 699, 990, 1421, 1581, 1680
CviQI GTAC 7 cut(s) 14, 113, 699, 990, 1421, 1581, 1680
DdeI CTNAG 2 cut(s) 402, 487
DpnI GATC 4 cut(s) 480, 663, 1594, 1650
DpnII GATC 4 cut(s) 478, 661, 1592, 1648
DraI TTTAAA 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 102, 479
EarI CTCTTC 2 cut(s) 102, 479
EciI GGCGGA 1 cut(s) 1426
Eco130I CCWWGG 1 cut(s) 1187
Eco47I GGWCC 2 cut(s) 689, 836
Eco57I CTGAAG 1 cut(s) 963
Eco88I CYCGRG 1 cut(s) 1776
EcoNI CCTNNNNNAGG 1 cut(s) 671
EcoO109I RGGNCCY 1 cut(s) 689
EcoRI GAATTC 2 cut(s) 1750, 1762
EcoT14I CCWWGG 1 cut(s) 1187
ErhI CCWWGG 1 cut(s) 1187
FalI AAGNNNNNCTT 6 cut(s) 138, 170, 1251, 1283, 1443, 1475
FaqI GGGAC 2 cut(s) 702, 1771
FauI CCCGC 1 cut(s) 213
FauNDI CATATG 2 cut(s) 267, 531
FbaI TGATCA 1 cut(s) 1648
FblI GTMKAC 2 cut(s) 359, 1183
Fnu4HI GCNGC 4 cut(s) 64, 197, 1121, 1791
FokI GGATG 7 cut(s) 902, 969, 1080, 1172, 1272, 1426, 1793
Fsp4HI GCNGC 4 cut(s) 64, 197, 1121, 1791
FspBI CTAG 5 cut(s) 116, 387, 632, 1331, 1668
GluI GCNGC 4 cut(s) 64, 197, 1121, 1791
GsuI CTGGAG 1 cut(s) 1627
HaeIII GGCC 2 cut(s) 897, 1563
HapII CCGG 2 cut(s) 839, 1029
HgaI GACGC 1 cut(s) 1298
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 2 cut(s) 1109, 1661
HinfI GANTC 2 cut(s) 422, 535
HpaII CCGG 2 cut(s) 839, 1029
HphI GGTGA 4 cut(s) 365, 922, 1646, 1736
Hpy166II GTNNAC 5 cut(s) 276, 360, 1184, 1421, 1423
Hpy188I TCNGA 2 cut(s) 639, 1735
Hpy8I GTNNAC 5 cut(s) 276, 360, 1184, 1421, 1423
Hpy99I CGWCG 1 cut(s) 1314
HpyAV CCTTC 6 cut(s) 22, 77, 490, 938, 1487, 1523
HpyCH4III ACNGT 6 cut(s) 349, 587, 685, 1220, 1427, 1724
HpyCH4IV ACGT 1 cut(s) 697
HpyF10VI GCNNNNNNNGC 4 cut(s) 759, 1008, 1117, 1376
HpyF3I CTNAG 2 cut(s) 402, 487
HpySE526I ACGT 1 cut(s) 697
KflI GGGWCCC 1 cut(s) 689
Ksp22I TGATCA 1 cut(s) 1648
Kzo9I GATC 4 cut(s) 478, 661, 1592, 1648
Lsp1109I GCAGC 4 cut(s) 75, 208, 1107, 1802
LweI GCATC 2 cut(s) 1150, 1777
MaeI CTAG 5 cut(s) 116, 387, 632, 1331, 1668
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 3 cut(s) 392, 807, 1261
MalI GATC 4 cut(s) 480, 663, 1594, 1650
MboI GATC 4 cut(s) 478, 661, 1592, 1648
MboII GAAGA 5 cut(s) 119, 247, 466, 1754, 1758
MfeI CAATTG 1 cut(s) 518
MflI RGATCY 1 cut(s) 1592
MhlI GDGCHC 1 cut(s) 1299
MlyI GAGTC 1 cut(s) 544
MroXI GAANNNNTTC 2 cut(s) 473, 601
MseI TTAA 8 cut(s) 96, 123, 717, 1257, 1437, 1461, 1547, 1819
MslI CAYNNNNRTG 2 cut(s) 446, 1428
MspCI CTTAAG 1 cut(s) 1460
MspI CCGG 2 cut(s) 839, 1029
MspR9I CCNGG 1 cut(s) 1029
MunI CAATTG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 755
MwoI GCNNNNNNNGC 4 cut(s) 759, 1008, 1117, 1376
NciI CCSGG 1 cut(s) 1029
NcoI CCATGG 1 cut(s) 1187
NdeI CATATG 2 cut(s) 267, 531
NdeII GATC 4 cut(s) 478, 661, 1592, 1648
NlaIV GGNNCC 2 cut(s) 690, 691
NmeAIII GCCGAG 1 cut(s) 648
NmuCI GTSAC 1 cut(s) 392
NspV TTCGAA 1 cut(s) 828
OliI CACNNNNGTG 1 cut(s) 1428
PagI TCATGA 3 cut(s) 133, 820, 1587
PctI GAATGC 1 cut(s) 755
PdmI GAANNNNTTC 2 cut(s) 473, 601
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 4 cut(s) 65, 198, 1122, 1792
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
PpuMI RGGWCCY 1 cut(s) 689
PshBI ATTAAT 1 cut(s) 1437
Psp5II RGGWCCY 1 cut(s) 689
PspN4I GGNNCC 2 cut(s) 690, 691
PspPI GGNCC 3 cut(s) 689, 836, 896
PspPPI RGGWCCY 1 cut(s) 689
PsuI RGATCY 1 cut(s) 1592
RsaI GTAC 7 cut(s) 15, 114, 700, 991, 1422, 1582, 1681
RsaNI GTAC 7 cut(s) 14, 113, 699, 990, 1421, 1581, 1680
RseI CAYNNNNRTG 2 cut(s) 446, 1428
SaqAI TTAA 8 cut(s) 96, 123, 717, 1257, 1437, 1461, 1547, 1819
SatI GCNGC 4 cut(s) 64, 197, 1121, 1791
Sau3AI GATC 4 cut(s) 478, 661, 1592, 1648
Sau96I GGNCC 3 cut(s) 689, 836, 896
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 1 cut(s) 1029
SduI GDGCHC 1 cut(s) 1299
SfaNI GCATC 2 cut(s) 1150, 1777
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 828
SinI GGWCC 2 cut(s) 689, 836
SmiMI CAYNNNNRTG 2 cut(s) 446, 1428
SmlI CTYRAG 4 cut(s) 74, 1460, 1598, 1658
SmoI CTYRAG 4 cut(s) 74, 1460, 1598, 1658
SpeI ACTAGT 1 cut(s) 631
SsiI CCGC 3 cut(s) 220, 271, 1411
SspI AATATT 1 cut(s) 1255
SspMI CTAG 5 cut(s) 116, 387, 632, 1331, 1668
StyD4I CCNGG 1 cut(s) 1027
StyI CCWWGG 1 cut(s) 1187
TaaI ACNGT 6 cut(s) 349, 587, 685, 1220, 1427, 1724
TaiI ACGT 1 cut(s) 700
TaqI TCGA 3 cut(s) 477, 538, 828
TaqII GACCGA 1 cut(s) 899
TatI WGTACW 4 cut(s) 989, 1420, 1580, 1679
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 8 cut(s) 96, 123, 717, 1257, 1437, 1461, 1547, 1819
Tru9I TTAA 8 cut(s) 96, 123, 717, 1257, 1437, 1461, 1547, 1819
TscAI CASTG 2 cut(s) 1610, 1651
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 4 cut(s) 63, 196, 1120, 1790
Tsp45I GTSAC 1 cut(s) 392
TspRI CASTG 2 cut(s) 1610, 1651
Vha464I CTTAAG 1 cut(s) 1460
VpaK11BI GGWCC 2 cut(s) 689, 836
VspI ATTAAT 1 cut(s) 1437
XagI CCTNNNNNAGG 1 cut(s) 671
XapI RAATTY 8 cut(s) 53, 80, 325, 368, 1479, 1631, 1750, 1762
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XmiI GTMKAC 2 cut(s) 359, 1183
XmnI GAANNNNTTC 2 cut(s) 473, 601
XspI CTAG 5 cut(s) 116, 387, 632, 1331, 1668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.