Rh2DG251900

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000291
Physical Location & Seq
Reverse (-)
26079785 .. 26080132
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG251900.1

Sequence Viewer

Length: 348 bp
ATGGTGAACAATACTGCAGGACATACTAATGGCACCAGAAGATTATCTCACTCTGAGTACCAGGAAAGACGAGCAAAAAACCAGTGTTTCTTCTACGAGGAGCCTTTCAAACCAGGCCACAACTGTAGGAAAGGCCAGCTCATGATCATGGAAGTCTTACAAGAGGACTGTGATCTGTTGAACTCTTCAGATGATATGGATACAACAGGAGTACTAATTAAGTACAATTGCATAACAAGTGAGTGGTGGGAATTGATTCTGACCAGTGATATGTTGCTGAGCAGGGAGTCAAAATTAGAGACATGGGTAGGCCAAAGAGTCTTCACAGCAAAGCGGCCCACTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

115

Amino Acids

13.44

Weight (kDa)

5.9

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 3 cut(s) 59, 213, 224
AgsI TTSAA 2 cut(s) 109, 181
AjnI CCWGG 2 cut(s) 60, 112
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 293
AoxI GGCC 4 cut(s) 115, 133, 310, 335
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 313
BciT130I CCWGG 2 cut(s) 62, 114
BciVI GTATCC 1 cut(s) 193
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 293
BfmI CTRYAG 2 cut(s) 15, 124
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 1 cut(s) 335
BlpI GCTNAGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 336
BmcAI AGTACT 1 cut(s) 213
Bme1390I CCNGG 2 cut(s) 62, 114
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 34, 102
BmrFI CCNGG 2 cut(s) 62, 114
BpiI GAAGAC 1 cut(s) 313
Bpu1102I GCTNAGC 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 82, 264
BseBI CCWGG 2 cut(s) 62, 114
BseMII CTCAG 2 cut(s) 45, 269
BseNI ACTGG 2 cut(s) 82, 264
BseRI GAGGAG 1 cut(s) 113
BshFI GGCC 4 cut(s) 117, 135, 312, 337
BshNI GGYRCC 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 4 cut(s) 117, 135, 312, 337
Bsp143I GATC 2 cut(s) 144, 172
Bsp1720I GCTNAGC 1 cut(s) 278
BspACI CCGC 1 cut(s) 334
BspANI GGCC 4 cut(s) 117, 135, 312, 337
BspCNI CTCAG 2 cut(s) 46, 270
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 34, 102
BspMAI CTGCAG 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 32
BsrI ACTGG 2 cut(s) 82, 264
BssMI GATC 2 cut(s) 144, 172
Bst2UI CCWGG 2 cut(s) 62, 114
Bst4CI ACNGT 2 cut(s) 125, 170
Bst6I CTCTTC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 54, 278
BstKTI GATC 2 cut(s) 147, 175
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 2 cut(s) 144, 172
BstNI CCWGG 2 cut(s) 62, 114
BstSCI CCNGG 2 cut(s) 60, 112
BstSFI CTRYAG 2 cut(s) 15, 124
BstV2I GAAGAC 1 cut(s) 313
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 4 cut(s) 117, 135, 312, 337
BtsIMutI CAGTG 2 cut(s) 89, 271
Cac8I GCNNGC 1 cut(s) 137
CciI TCATGA 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 3 cut(s) 58, 212, 223
CviAII CATG 3 cut(s) 142, 148, 303
CviJI RGCY 6 cut(s) 103, 117, 135, 139, 312, 337
CviKI_1 RGCY 6 cut(s) 103, 117, 135, 139, 312, 337
CviQI GTAC 3 cut(s) 58, 212, 223
DdeI CTNAG 2 cut(s) 54, 278
DpnI GATC 2 cut(s) 146, 174
DpnII GATC 2 cut(s) 144, 172
DraIII CACNNNGTG 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 60, 112
FaeI CATG 3 cut(s) 145, 151, 306
FaiI YATR 7 cut(s) 24, 143, 149, 197, 233, 272, 304
FatI CATG 3 cut(s) 141, 147, 302
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 335
GluI GCNGC 1 cut(s) 335
HaeIII GGCC 4 cut(s) 117, 135, 312, 337
Hin1II CATG 3 cut(s) 145, 151, 306
HinfI GANTC 3 cut(s) 256, 287, 318
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 55, 190, 261
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 7
HpyCH4III ACNGT 2 cut(s) 125, 170
HpyCH4V TGCA 2 cut(s) 17, 231
HpyF3I CTNAG 2 cut(s) 54, 278
Hsp92II CATG 3 cut(s) 145, 151, 306
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 2 cut(s) 144, 172
LmnI GCTCC 1 cut(s) 100
MalI GATC 2 cut(s) 146, 174
MboI GATC 2 cut(s) 144, 172
MboII GAAGA 4 cut(s) 51, 82, 177, 313
MfeI CAATTG 1 cut(s) 226
MluCI AATT 4 cut(s) 216, 226, 251, 293
MlyI GAGTC 2 cut(s) 296, 327
MnlI CCTC 2 cut(s) 91, 157
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 27, 146
MspR9I CCNGG 2 cut(s) 62, 114
MunI CAATTG 1 cut(s) 226
MvaI CCWGG 2 cut(s) 62, 114
NdeII GATC 2 cut(s) 144, 172
NlaIII CATG 3 cut(s) 145, 151, 306
NlaIV GGNNCC 2 cut(s) 34, 102
PagI TCATGA 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 336
PleI GAGTC 2 cut(s) 295, 326
PpsI GAGTC 2 cut(s) 295, 326
Psp6I CCWGG 2 cut(s) 60, 112
PspGI CCWGG 2 cut(s) 60, 112
PspN4I GGNNCC 2 cut(s) 34, 102
PspPI GGNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 3 cut(s) 59, 213, 224
RsaNI GTAC 3 cut(s) 58, 212, 223
RseI CAYNNNNRTG 2 cut(s) 27, 146
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 335
Sau3AI GATC 2 cut(s) 144, 172
Sau96I GGNCC 1 cut(s) 336
ScaI AGTACT 1 cut(s) 213
SchI GAGTC 2 cut(s) 296, 327
ScrFI CCNGG 2 cut(s) 62, 114
SetI ASST 1 cut(s) 141
SfcI CTRYAG 2 cut(s) 15, 124
SmiMI CAYNNNNRTG 2 cut(s) 27, 146
Sse9I AATT 4 cut(s) 216, 226, 251, 293
SsiI CCGC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 60, 112
TaaI ACNGT 2 cut(s) 125, 170
TasI AATT 4 cut(s) 216, 226, 251, 293
TatI WGTACW 2 cut(s) 211, 222
TauI GCSGC 1 cut(s) 337
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 89, 271
TspRI CASTG 2 cut(s) 89, 271
XmnI GAANNNNTTC 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.