Retroviral aspartyl protease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 250 |
| AcsI | RAATTY | 1 cut(s) | 56 |
| AfaI | GTAC | 1 cut(s) | 223 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 218 |
| AflII | CTTAAG | 2 cut(s) | 17, 41 |
| AluBI | AGCT | 4 cut(s) | 104, 139, 164, 241 |
| AluI | AGCT | 4 cut(s) | 104, 139, 164, 241 |
| AlwI | GGATC | 1 cut(s) | 250 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 86 |
| ApoI | RAATTY | 1 cut(s) | 56 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 208, 240 |
| AspA2I | CCTAGG | 1 cut(s) | 212 |
| AspS9I | GGNCC | 1 cut(s) | 5 |
| AvaII | GGWCC | 1 cut(s) | 5 |
| AvrII | CCTAGG | 1 cut(s) | 212 |
| BaeGI | GKGCMC | 1 cut(s) | 125 |
| BfaI | CTAG | 2 cut(s) | 161, 213 |
| BfrI | CTTAAG | 2 cut(s) | 17, 41 |
| BlnI | CCTAGG | 1 cut(s) | 212 |
| Bme18I | GGWCC | 1 cut(s) | 5 |
| BmgT120I | GGNCC | 1 cut(s) | 5 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BsaJI | CCNNGG | 1 cut(s) | 212 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 218 |
| BseDI | CCNNGG | 1 cut(s) | 212 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 218 |
| BseMII | CTCAG | 2 cut(s) | 126, 233 |
| BseSI | GKGCMC | 1 cut(s) | 125 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 218 |
| Bsp1286I | GDGCHC | 1 cut(s) | 125 |
| Bsp143I | GATC | 1 cut(s) | 255 |
| BspCNI | CTCAG | 2 cut(s) | 127, 234 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 1 cut(s) | 250 |
| BspTI | CTTAAG | 2 cut(s) | 17, 41 |
| BssECI | CCNNGG | 1 cut(s) | 212 |
| BssMI | GATC | 1 cut(s) | 255 |
| BssT1I | CCWWGG | 1 cut(s) | 212 |
| Bst4CI | ACNGT | 3 cut(s) | 88, 208, 253 |
| BstAFI | CTTAAG | 2 cut(s) | 17, 41 |
| BstDEI | CTNAG | 3 cut(s) | 126, 135, 242 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 216 |
| BstKTI | GATC | 1 cut(s) | 258 |
| BstMBI | GATC | 1 cut(s) | 255 |
| BstSLI | GKGCMC | 1 cut(s) | 125 |
| CaiI | CAGNNNCTG | 1 cut(s) | 86 |
| Cfr13I | GGNCC | 1 cut(s) | 5 |
| Csp6I | GTAC | 1 cut(s) | 222 |
| CviAII | CATG | 2 cut(s) | 47, 92 |
| CviJI | RGCY | 4 cut(s) | 104, 139, 164, 241 |
| CviKI_1 | RGCY | 4 cut(s) | 104, 139, 164, 241 |
| CviQI | GTAC | 1 cut(s) | 222 |
| DdeI | CTNAG | 3 cut(s) | 126, 135, 242 |
| DpnI | GATC | 1 cut(s) | 257 |
| DpnII | GATC | 1 cut(s) | 255 |
| Eco130I | CCWWGG | 1 cut(s) | 212 |
| Eco47I | GGWCC | 1 cut(s) | 5 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 216 |
| EcoT14I | CCWWGG | 1 cut(s) | 212 |
| ErhI | CCWWGG | 1 cut(s) | 212 |
| FaeI | CATG | 2 cut(s) | 50, 95 |
| FaiI | YATR | 5 cut(s) | 48, 93, 101, 204, 316 |
| FatI | CATG | 2 cut(s) | 46, 91 |
| FspBI | CTAG | 2 cut(s) | 161, 213 |
| Hin1II | CATG | 2 cut(s) | 50, 95 |
| HincII | GTYRAC | 1 cut(s) | 196 |
| HindII | GTYRAC | 1 cut(s) | 196 |
| HinfI | GANTC | 1 cut(s) | 244 |
| HpaI | GTTAAC | 1 cut(s) | 196 |
| Hpy166II | GTNNAC | 2 cut(s) | 169, 196 |
| Hpy188I | TCNGA | 2 cut(s) | 9, 297 |
| Hpy8I | GTNNAC | 2 cut(s) | 169, 196 |
| HpyCH4III | ACNGT | 3 cut(s) | 88, 208, 253 |
| HpyCH4V | TGCA | 2 cut(s) | 91, 115 |
| HpyF3I | CTNAG | 3 cut(s) | 126, 135, 242 |
| Hsp92II | CATG | 2 cut(s) | 50, 95 |
| KspAI | GTTAAC | 1 cut(s) | 196 |
| Kzo9I | GATC | 1 cut(s) | 255 |
| LmnI | GCTCC | 1 cut(s) | 271 |
| LpnPI | CCDG | 3 cut(s) | 93, 204, 260 |
| MaeI | CTAG | 2 cut(s) | 161, 213 |
| MalI | GATC | 1 cut(s) | 257 |
| MboI | GATC | 1 cut(s) | 255 |
| MfeI | CAATTG | 1 cut(s) | 116 |
| MhlI | GDGCHC | 1 cut(s) | 125 |
| MluCI | AATT | 4 cut(s) | 56, 68, 116, 300 |
| MlyI | GAGTC | 1 cut(s) | 253 |
| MmeI | TCCRAC | 2 cut(s) | 272, 283 |
| MnlI | CCTC | 2 cut(s) | 189, 210 |
| MseI | TTAA | 6 cut(s) | 18, 42, 53, 75, 195, 234 |
| MspCI | CTTAAG | 2 cut(s) | 17, 41 |
| MunI | CAATTG | 1 cut(s) | 116 |
| NdeII | GATC | 1 cut(s) | 255 |
| NlaIII | CATG | 2 cut(s) | 50, 95 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PleI | GAGTC | 1 cut(s) | 252 |
| PpsI | GAGTC | 1 cut(s) | 252 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 5 |
| PstNI | CAGNNNCTG | 1 cut(s) | 86 |
| RsaI | GTAC | 1 cut(s) | 223 |
| RsaNI | GTAC | 1 cut(s) | 222 |
| SaqAI | TTAA | 6 cut(s) | 18, 42, 53, 75, 195, 234 |
| Sau3AI | GATC | 1 cut(s) | 255 |
| Sau96I | GGNCC | 1 cut(s) | 5 |
| SchI | GAGTC | 1 cut(s) | 253 |
| SduI | GDGCHC | 1 cut(s) | 125 |
| SetI | ASST | 7 cut(s) | 106, 141, 166, 181, 223, 243, 314 |
| SgeI | CNNG | 9 cut(s) | 43, 59, 92, 104, 173, 225, 231, 265, 287 |
| SinI | GGWCC | 1 cut(s) | 5 |
| SmlI | CTYRAG | 2 cut(s) | 17, 41 |
| SmoI | CTYRAG | 2 cut(s) | 17, 41 |
| Sse9I | AATT | 4 cut(s) | 56, 68, 116, 300 |
| SspMI | CTAG | 2 cut(s) | 161, 213 |
| StyI | CCWWGG | 1 cut(s) | 212 |
| TaaI | ACNGT | 3 cut(s) | 88, 208, 253 |
| TasI | AATT | 4 cut(s) | 56, 68, 116, 300 |
| Tru1I | TTAA | 6 cut(s) | 18, 42, 53, 75, 195, 234 |
| Tru9I | TTAA | 6 cut(s) | 18, 42, 53, 75, 195, 234 |
| Vha464I | CTTAAG | 2 cut(s) | 17, 41 |
| VpaK11BI | GGWCC | 1 cut(s) | 5 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 216 |
| XapI | RAATTY | 1 cut(s) | 56 |
| XmaJI | CCTAGG | 1 cut(s) | 212 |
| XspI | CTAG | 2 cut(s) | 161, 213 |