Rw0G004800

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00184
OG0000291
Physical Location & Seq
Reverse (-)
18007 .. 18402
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004800.1

Sequence Viewer

Length: 396 bp
GAGTCGGCTGAAACGGACCTTCGAAGGAAAGGAAAGGCAATTGTTGTGCACAATGAAGGGACAGATAATCAGGGTGGGTTCTGGAAGAGGCAGAGGACTCATCAGCAGGCGCCAGGTAGAGTGGCAGCTGCACCTGCTGGGGTTGCACCTAACAGGCAGGTGGCGCCCTTAACATGTTATAATTGCAAGGAAGTGGGCCATATGGCGAGGCAGTGTTTGAAGCCGAAACCTAGGTCTTGTTATAATTGCGGACAAGTAGGGCATTTGGCTAATGAGTGTACCCGACCTCGGGGTATGAGACAGAGGGATCAGCAGAGGCAACATCCTCAGGGACATGCGAGGGTGATTGCTATTGGCCAGCAGAACGCAGGGGTGCAAGGTACCTTATCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 zf-CCHC

Protein Analysis

131

Amino Acids

14.36

Weight (kDa)

10.24

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 58 - 72 3.4e-07 Zinc knuckle
zf-CCHC PF00098 79 - 94 5.7e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 180, 243
AarI CACCTGC 2 cut(s) 142, 148
Acc36I ACCTGC 2 cut(s) 142, 148
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 3 cut(s) 109, 163, 380
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 355
AcyI GRCGYC 2 cut(s) 110, 164
AfaI GTAC 2 cut(s) 280, 382
AfiI CCNNNNNNNGG 2 cut(s) 288, 289
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 292
Alw44I GTGCAC 1 cut(s) 47
AlwI GGATC 1 cut(s) 315
Ama87I CYCGRG 1 cut(s) 288
AoxI GGCC 2 cut(s) 196, 355
ApaLI GTGCAC 1 cut(s) 47
ApeKI GCWGC 2 cut(s) 125, 128
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
Asp718I GGTACC 1 cut(s) 380
AspA2I CCTAGG 1 cut(s) 230
AspLEI GCGC 2 cut(s) 112, 166
AspS9I GGNCC 2 cut(s) 16, 196
AsuHPI GGTGA 1 cut(s) 355
AsuII TTCGAA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 288
AvaII GGWCC 1 cut(s) 16
AvrII CCTAGG 1 cut(s) 230
AxyI CCTNAGG 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 51
BalI TGGCCA 1 cut(s) 357
BanI GGYRCC 3 cut(s) 109, 163, 380
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 2 cut(s) 115, 137
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 231
BfoI RGCGCY 2 cut(s) 113, 167
BfuAI ACCTGC 2 cut(s) 142, 148
BisI GCNGC 2 cut(s) 126, 129
BlnI CCTAGG 1 cut(s) 230
BlsI GCNGC 2 cut(s) 127, 130
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 288
BmgT120I GGNCC 2 cut(s) 16, 196
BmiI GGNNCC 3 cut(s) 111, 165, 382
BmrFI CCNGG 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 22
BsaHI GRCGYC 2 cut(s) 110, 164
BsaJI CCNNGG 2 cut(s) 230, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 289
Bse21I CCTNAGG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 230, 287
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 2 cut(s) 288, 289
BseMII CTCAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 2 cut(s) 115, 137
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 2 cut(s) 198, 357
BshNI GGYRCC 3 cut(s) 109, 163, 380
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 288
BslFI GGGAC 2 cut(s) 73, 345
BslI CCNNNNNNNGG 2 cut(s) 288, 289
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 2 cut(s) 73, 345
BsnI GGCC 2 cut(s) 198, 357
BsoBI CYCGRG 1 cut(s) 288
Bsp119I TTCGAA 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 1 cut(s) 249
BspANI GGCC 2 cut(s) 198, 357
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 111, 165, 382
BspMI ACCTGC 2 cut(s) 142, 148
BspPI GGATC 1 cut(s) 315
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 3 cut(s) 109, 163, 380
BssECI CCNNGG 2 cut(s) 230, 287
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 2 cut(s) 110, 164
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 80
BstACI GRCGYC 2 cut(s) 110, 164
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 108, 359
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 322
BstH2I RGCGCY 2 cut(s) 113, 167
BstHHI GCGC 2 cut(s) 112, 166
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 134, 143, 163
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 2 cut(s) 177, 338
BstSCI CCNGG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 115, 137
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 2 cut(s) 198, 357
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
BveI ACCTGC 2 cut(s) 142, 148
Cac8I GCNNGC 2 cut(s) 108, 359
CfoI GCGC 2 cut(s) 112, 166
Cfr13I GGNCC 2 cut(s) 16, 196
Csp6I GTAC 2 cut(s) 279, 381
CviAII CATG 2 cut(s) 174, 335
CviJI RGCY 6 cut(s) 8, 128, 198, 223, 269, 357
CviKI_1 RGCY 6 cut(s) 8, 128, 198, 223, 269, 357
CviQI GTAC 2 cut(s) 279, 381
DdeI CTNAG 1 cut(s) 327
DinI GGCGCC 2 cut(s) 111, 165
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 16
Eco81I CCTNAGG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 230
EgeI GGCGCC 2 cut(s) 111, 165
EheI GGCGCC 2 cut(s) 111, 165
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 2 cut(s) 177, 338
FaiI YATR 7 cut(s) 175, 180, 201, 203, 243, 296, 336
FaqI GGGAC 2 cut(s) 73, 345
FatI CATG 2 cut(s) 173, 334
FauNDI CATATG 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 126, 129
FokI GGATG 1 cut(s) 309
Fsp4HI GCNGC 2 cut(s) 126, 129
FspBI CTAG 1 cut(s) 231
GlaI GCGC 2 cut(s) 111, 165
GluI GCNGC 2 cut(s) 126, 129
GsaI CCCAGC 1 cut(s) 141
HaeII RGCGCY 2 cut(s) 113, 167
HaeIII GGCC 2 cut(s) 198, 357
HhaI GCGC 2 cut(s) 112, 166
Hin1I GRCGYC 2 cut(s) 110, 164
Hin1II CATG 2 cut(s) 177, 338
Hin6I GCGC 2 cut(s) 110, 164
HinP1I GCGC 2 cut(s) 110, 164
HinfI GANTC 2 cut(s) 2, 97
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 49, 279
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 2 cut(s) 49, 279
HpyAV CCTTC 3 cut(s) 18, 29, 50
HpyCH4V TGCA 5 cut(s) 49, 131, 146, 186, 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 143, 163
HpyF3I CTNAG 1 cut(s) 327
Hsp92I GRCGYC 2 cut(s) 110, 164
Hsp92II CATG 2 cut(s) 177, 338
HspAI GCGC 2 cut(s) 110, 164
KasI GGCGCC 2 cut(s) 109, 163
KpnI GGTACC 1 cut(s) 384
Kzo9I GATC 1 cut(s) 307
Lsp1109I GCAGC 2 cut(s) 115, 137
MaeI CTAG 1 cut(s) 231
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 1 cut(s) 97
MfeI CAATTG 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 3 cut(s) 39, 181, 244
MluNI TGGCCA 1 cut(s) 357
Mly113I GGCGCC 2 cut(s) 110, 164
MlyI GAGTC 2 cut(s) 11, 91
MnlI CCTC 8 cut(s) 81, 87, 201, 297, 297, 309, 333, 336
Mox20I TGGCCA 1 cut(s) 357
MscI TGGCCA 1 cut(s) 357
MseI TTAA 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 134, 143, 163
NarI GGCGCC 2 cut(s) 110, 164
NdeI CATATG 1 cut(s) 201
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 177, 338
NlaIV GGNNCC 3 cut(s) 111, 165, 382
NspI RCATGY 2 cut(s) 177, 338
NspV TTCGAA 1 cut(s) 22
PaqCI CACCTGC 2 cut(s) 142, 148
PciI ACATGT 1 cut(s) 173
PkrI GCNGC 2 cut(s) 127, 130
PleI GAGTC 2 cut(s) 10, 91
PluTI GGCGCC 2 cut(s) 113, 167
PpsI GAGTC 2 cut(s) 10, 91
PscI ACATGT 1 cut(s) 173
PsiI TTATAA 2 cut(s) 180, 243
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 3 cut(s) 111, 165, 382
PspPI GGNCC 2 cut(s) 16, 196
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 280, 382
RsaNI GTAC 2 cut(s) 279, 381
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 2 cut(s) 126, 129
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 2 cut(s) 16, 196
SchI GAGTC 2 cut(s) 11, 91
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 51
SfoI GGCGCC 2 cut(s) 111, 165
SfuI TTCGAA 1 cut(s) 22
SinI GGWCC 1 cut(s) 16
Sse9I AATT 3 cut(s) 39, 181, 244
SsiI CCGC 1 cut(s) 249
SspDI GGCGCC 2 cut(s) 109, 163
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 230
TaqI TCGA 1 cut(s) 22
TasI AATT 3 cut(s) 39, 181, 244
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 218
TseI GCWGC 2 cut(s) 125, 128
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 218
VneI GTGCAC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 16
XceI RCATGY 2 cut(s) 177, 338
XmaJI CCTAGG 1 cut(s) 230
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.