Rmu_sc0005065.1_g000030

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005065.1
OG0000291
Physical Location & Seq
Forward (+)
123750 .. 124223
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005065.1_g000030.1.cds

Sequence Viewer

Length: 474 bp
atgggtgaagttacgaaatcagatattgaagctcttacaacagagtttaccgctgccttcaactccgtgaataatcagattggagaaattcgcggactgttgggagagaggaacaacaacaacaacaacaacaacaacatcaacaacaataatcggaatagaggcggggaaggaggccagcgaattagggctccccgtggtgaagttgttgataataattcagaatctggttctgaagaagaaattgtgcaacctgaacaacaaggacaagctgatcaggattccaaggtcaaggctgatattccttacttttctggtcacatgagcgtggaggattttctggattggcaggttaaagtggatatattctttgagatcatggaggttacaggacacaagcaacctaagatggtttctcggaagctgaagaaagatgctgcttattggtgggatcagttgcagagctctcgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

157

Amino Acids

17.76

Weight (kDa)

4.9

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 340
AccII CGCG 1 cut(s) 93
AciI CCGC 3 cut(s) 51, 93, 165
AclWI GGATC 1 cut(s) 459
AcsI RAATTY 1 cut(s) 87
AcuI CTGAAG 2 cut(s) 255, 446
AgsI TTSAA 2 cut(s) 29, 61
AluBI AGCT 4 cut(s) 32, 272, 424, 465
AluI AGCT 4 cut(s) 32, 272, 424, 465
Alw21I GWGCWC 1 cut(s) 467
AlwI GGATC 1 cut(s) 459
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 53, 437
ApoI RAATTY 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 17, 212
BanII GRGCYC 2 cut(s) 193, 467
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 2 cut(s) 40, 424
BccI CCATC 1 cut(s) 403
BcgI CGANNNNNNTGC 1 cut(s) 449
BclI TGATCA 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 2 cut(s) 54, 438
BlsI GCNGC 2 cut(s) 55, 439
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 196, 285
BseDI CCNNGG 2 cut(s) 196, 285
BseXI GCAGC 2 cut(s) 40, 424
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 467
BsnI GGCC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 193, 467
Bsp143I GATC 3 cut(s) 274, 375, 451
BspACI CCGC 3 cut(s) 51, 93, 165
BspANI GGCC 1 cut(s) 177
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 196, 285
BssMI GATC 3 cut(s) 274, 375, 451
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 3 cut(s) 277, 378, 454
BstMBI GATC 3 cut(s) 274, 375, 451
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 40, 424
BsuRI GGCC 1 cut(s) 177
BtgI CCRYGG 1 cut(s) 196
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 179
CaiI CAGNNNCTG 1 cut(s) 227
CviAII CATG 2 cut(s) 322, 379
CviJI RGCY 7 cut(s) 32, 177, 191, 272, 296, 424, 465
CviKI_1 RGCY 7 cut(s) 32, 177, 191, 272, 296, 424, 465
DdeI CTNAG 1 cut(s) 405
DpnI GATC 3 cut(s) 276, 377, 453
DpnII GATC 3 cut(s) 274, 375, 451
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 1 cut(s) 285
Eco24I GRGCYC 2 cut(s) 193, 467
Eco53kI GAGCTC 1 cut(s) 465
Eco57I CTGAAG 2 cut(s) 255, 446
EcoICRI GAGCTC 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 285
EcoT38I GRGCYC 2 cut(s) 193, 467
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 325, 382
FaiI YATR 3 cut(s) 323, 365, 380
FatI CATG 2 cut(s) 321, 378
FauI CCCGC 1 cut(s) 158
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 54, 438
FriOI GRGCYC 2 cut(s) 193, 467
Fsp4HI GCNGC 2 cut(s) 54, 438
GluI GCNGC 2 cut(s) 54, 438
HaeIII GGCC 1 cut(s) 177
Hin1II CATG 2 cut(s) 325, 382
HinfI GANTC 2 cut(s) 224, 281
HphI GGTGA 2 cut(s) 17, 212
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 6 cut(s) 22, 78, 156, 223, 235, 420
Hpy188III TCNNGA 2 cut(s) 278, 341
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 67, 164
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 250, 460
HpyF3I CTNAG 1 cut(s) 405
Hsp92II CATG 2 cut(s) 325, 382
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 3 cut(s) 274, 375, 451
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 8 cut(s) 191, 213, 263, 267, 300, 326, 335, 375
Lsp1109I GCAGC 2 cut(s) 40, 424
LweI GCATC 1 cut(s) 424
MaeIII GTNAC 3 cut(s) 10, 317, 385
MalI GATC 3 cut(s) 276, 377, 453
MboI GATC 3 cut(s) 274, 375, 451
MboII GAAGA 3 cut(s) 248, 251, 439
MhlI GDGCHC 2 cut(s) 193, 467
MluCI AATT 4 cut(s) 87, 183, 217, 243
MnlI CCTC 5 cut(s) 102, 155, 167, 325, 376
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 53
MvnI CGCG 1 cut(s) 93
NdeII GATC 3 cut(s) 274, 375, 451
NlaIII CATG 2 cut(s) 325, 382
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 224, 281
PkrI GCNGC 2 cut(s) 55, 439
Psp124BI GAGCTC 1 cut(s) 467
PspN4I GGNNCC 1 cut(s) 192
PstNI CAGNNNCTG 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 1 cut(s) 467
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 2 cut(s) 54, 438
Sau3AI GATC 3 cut(s) 274, 375, 451
SduI GDGCHC 2 cut(s) 193, 467
SetI ASST 9 cut(s) 34, 256, 274, 291, 354, 387, 406, 426, 467
SfaNI GCATC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 4 cut(s) 87, 183, 217, 243
SsiI CCGC 3 cut(s) 51, 93, 165
SstI GAGCTC 1 cut(s) 467
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 99
TasI AATT 4 cut(s) 87, 183, 217, 243
TfiI GAWTC 2 cut(s) 224, 281
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 53, 437
Tsp45I GTSAC 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 55
XapI RAATTY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.