Rroxscaffold_1G00059440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000291
Physical Location & Seq
Forward (+)
81430698 .. 81432986
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059440.1

Sequence Viewer

Length: 345 bp
ATGGGTGAAGTTACGAAACCAGATCTTAATGCTCTTACCGCTTCTTTTACAGCAGCGTTTACCGCTACCATCAACACCATGAACAATCGTATTGGAGAAATTCGTGGACTATTGGGAGAAAGAAACAACAACAACAATAATCGAATAGAGGCGGGGAAGGAGGCCGGCGAGCTAGGGCTCCATGTGGTGAAGTTGTTGTTAATAGTTCGATATCGATTCGAAGAAGAAATTGTACAACTCGAACAACCGGTACAAGCTGACCAGATTACAAAGTCAAGGCCGAAATTCCTTTCTTTTCGGGCAACTTGGGTGTGGAAGATTATTTGGATTGGCAACTTCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.91

Weight (kDa)

9.22

Isoelectric Point (pI)

15.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 39, 63, 152
AcsI RAATTY 2 cut(s) 99, 284
AfaI GTAC 2 cut(s) 234, 252
AgeI ACCGGT 1 cut(s) 247
AluBI AGCT 2 cut(s) 172, 257
AluI AGCT 2 cut(s) 172, 257
AoxI GGCC 2 cut(s) 162, 278
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 99, 284
AsiGI ACCGGT 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 17, 199
AsuII TTCGAA 1 cut(s) 219
BanII GRGCYC 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 216, 248
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 77
BfaI CTAG 1 cut(s) 173
BglII AGATCT 1 cut(s) 22
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 247
Bse118I RCCGGY 2 cut(s) 164, 247
BseCI ATCGAT 1 cut(s) 214
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 2 cut(s) 164, 280
BshTI ACCGGT 1 cut(s) 247
BshVI ATCGAT 1 cut(s) 214
BsiSI CCGG 2 cut(s) 165, 248
BsnI GGCC 2 cut(s) 164, 280
Bsp119I TTCGAA 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 180
Bsp1407I TGTACA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 3 cut(s) 39, 63, 152
BspANI GGCC 2 cut(s) 164, 280
BspDI ATCGAT 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 179
BspT104I TTCGAA 1 cut(s) 219
BsrFI RCCGGY 2 cut(s) 164, 247
BsrGI TGTACA 1 cut(s) 232
BssAI RCCGGY 2 cut(s) 164, 247
BssMI GATC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 232
BstBI TTCGAA 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 166, 170
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 38, 62
BstV1I GCAGC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
Bsu15I ATCGAT 1 cut(s) 214
BsuRI GGCC 2 cut(s) 164, 280
BsuTUI ATCGAT 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 166, 170
Cfr10I RCCGGY 2 cut(s) 164, 247
ClaI ATCGAT 1 cut(s) 214
Csp6I GTAC 2 cut(s) 233, 251
CspAI ACCGGT 1 cut(s) 247
CviAII CATG 2 cut(s) 79, 182
CviJI RGCY 5 cut(s) 164, 172, 178, 257, 280
CviKI_1 RGCY 5 cut(s) 164, 172, 178, 257, 280
CviQI GTAC 2 cut(s) 233, 251
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 180
Eco32I GATATC 1 cut(s) 212
EcoRV GATATC 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 2 cut(s) 82, 185
FaiI YATR 2 cut(s) 80, 183
FatI CATG 2 cut(s) 78, 181
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 173
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 164, 280
HapII CCGG 2 cut(s) 165, 248
Hin1II CATG 2 cut(s) 82, 185
HinfI GANTC 1 cut(s) 216
HpaII CCGG 2 cut(s) 165, 248
HphI GGTGA 2 cut(s) 17, 199
Hpy166II GTNNAC 2 cut(s) 60, 107
Hpy8I GTNNAC 2 cut(s) 60, 107
HpyAV CCTTC 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 62
Hsp92II CATG 2 cut(s) 82, 185
KroI GCCGGC 1 cut(s) 164
KroNI GCCGGC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 4 cut(s) 33, 178, 261, 275
Lsp1109I GCAGC 1 cut(s) 65
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 3 cut(s) 233, 236, 328
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 3 cut(s) 99, 228, 284
MnlI CCTC 2 cut(s) 142, 154
MroNI GCCGGC 1 cut(s) 164
MseI TTAA 2 cut(s) 27, 200
MspI CCGG 2 cut(s) 165, 248
MwoI GCNNNNNNNGC 2 cut(s) 38, 62
NaeI GCCGGC 1 cut(s) 166
NdeII GATC 1 cut(s) 22
NgoMIV GCCGGC 1 cut(s) 164
NlaIII CATG 2 cut(s) 82, 185
NlaIV GGNNCC 1 cut(s) 179
NspV TTCGAA 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 216
PinAI ACCGGT 1 cut(s) 247
PkrI GCNGC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 179
PsrI GAACNNNNNNTAC 2 cut(s) 234, 266
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 2 cut(s) 234, 252
RsaNI GTAC 2 cut(s) 233, 251
SaqAI TTAA 2 cut(s) 27, 200
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 22
SduI GDGCHC 1 cut(s) 180
SetI ASST 2 cut(s) 174, 259
SfuI TTCGAA 1 cut(s) 219
Sse9I AATT 3 cut(s) 99, 228, 284
SsiI CCGC 3 cut(s) 39, 63, 152
SspMI CTAG 1 cut(s) 173
TaqI TCGA 5 cut(s) 142, 208, 214, 219, 240
TasI AATT 3 cut(s) 99, 228, 284
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 2 cut(s) 27, 200
Tru9I TTAA 2 cut(s) 27, 200
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 95
XapI RAATTY 2 cut(s) 99, 284
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.