Rw5G040190

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000291
Physical Location & Seq
Reverse (-)
70922881 .. 70924200
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G040190.1

Sequence Viewer

Length: 1146 bp
ATGAGGGAATGTCACGACACCCTGTGGGCAGGTCACCGTGGATGGCAGAGGACTCATGCACTCCTCAAGCAGGGTTACTATTGGCCCCAGATGCGAGACGATGTCACAGAATACACCAAGACTTGCTTAACATACCAGCAAGACAAGATTGAACGCCAAAAGACTCCAGGGCTGTTGGAACCACTGTCTATTCCGACTCGCCCGTGGGAAAGTGTCTCCCTTGACTTTATTACTAACCTCCCGAAGGTGGGAGACTTATCAGGCATCCTGGTGGTGGTTGACAGGTTTTCGAAGTATGCCACCTTTGTGCCAACCCCAAAGTATTGTTCGGCGGAAGACACAGCAAGCCTCTTCTTCAAGCATGTGGCAAAGTATTGGGGTGTGCCTCAGAACATTGTCAGCGATCGCGACACTAGGTTCACTGGAACATTCAGGATCGAGCTATTCAACTCATCCACCAACAAGAGTGCTTTTGAAATTATCACTGGCCAACAGCCTCTCTTGCCTCATACTGTGCAAGAAGTCTACAAAGGGACTAATCCGCGTGCTTTCAATTTCACAAAAGAGTGGAAGACCAATTCTGAGATTGCTCAAGCCTACCTAGAGAAAGCTGCGGGGGGAATGAAGAAGTGGGCAGATGAAGGCCGCAAGCCCAGGGAGTTTAAAGTAGGAGACATGGTCCTTGTCAAAGTGCTCCCGGAACAACTCAGGTTCTTGCACTCCAGAGACAAGCGACTATTCCAGAAGTATGAAGGACCGCTCCCCATCATTTCTAAAGTGGGGAAATGCTCCTACAAAGTAGATATTCCCGCCTGGATGAGAGTCCACCCCATCTTCCACATCAGCAACCTCAAGCCGCACCAGCCAGACCATGAAGATCAAGCACGCAACCGGCCTGTTCGAGAGCACGTCGACATCAGACCACCCAAGCTGAAAGAAGTAGAGGAGATCCTAGCAGAGAGAGTGACCAGAGTGTCGAGGCGCCCATGCCAGCAGTTCCTGGTCAAGTGGAAGGGTCTTGGAGATGAAGAAACCAGTTGGGAGAATGTTGAAGACCTGAAGAAGAAGTTCCAGCAAAAGATTGAAGACTTCAAGGCCAAAGCCGTCGTCGAGGGCACCAACAGCTTAAGTGGGGAAGGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

381

Amino Acids

44.19

Weight (kDa)

9.2

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 1 - 49 4e-17 Integrase zinc binding domain
SH3_Tf2-1 PF24626 224 - 287 8.9e-15 Tf2-1-like, SH3 domain
Chromo PF00385 313 - 366 4.3e-13 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 973
Acc36I ACCTGC 1 cut(s) 20
AccB1I GGYRCC 2 cut(s) 981, 1115
AccBSI CCGCTC 1 cut(s) 760
AccI GTMKAC 2 cut(s) 525, 912
AccII CGCG 2 cut(s) 408, 544
AciI CCGC 7 cut(s) 332, 542, 614, 646, 758, 810, 857
AclWI GGATC 2 cut(s) 443, 943
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 1079
AcyI GRCGYC 1 cut(s) 982
AdeI CACNNNGTG 1 cut(s) 24
AfiI CCNNNNNNNGG 5 cut(s) 70, 244, 247, 248, 274
AflII CTTAAG 1 cut(s) 1126
AgsI TTSAA 8 cut(s) 152, 358, 448, 476, 553, 1052, 1085, 1093
AjiI CACGTC 1 cut(s) 910
AjnI CCWGG 5 cut(s) 166, 267, 653, 812, 999
AjuI GAANNNNNNNTTGG 2 cut(s) 310, 342
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 4 cut(s) 442, 611, 931, 1125
AluI AGCT 4 cut(s) 442, 611, 931, 1125
Alw21I GWGCWC 2 cut(s) 696, 909
Alw26I GTCTC 5 cut(s) 90, 220, 246, 666, 720
AlwI GGATC 2 cut(s) 443, 943
AlwNI CAGNNNCTG 1 cut(s) 1000
AoxI GGCC 5 cut(s) 83, 487, 643, 893, 1095
ApeKI GCWGC 1 cut(s) 611
ArsI GACNNNNNNTTYG 2 cut(s) 1092, 1124
AsiSI GCGATCGC 1 cut(s) 406
Asp700I GAANNNNTTC 1 cut(s) 1067
AspLEI GCGC 1 cut(s) 984
AspS9I GGNCC 3 cut(s) 84, 679, 755
AsuC2I CCSGG 1 cut(s) 698
AsuHPI GGTGA 1 cut(s) 26
AsuII TTCGAA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 679, 755
BaeGI GKGCMC 1 cut(s) 1118
BalI TGGCCA 1 cut(s) 489
BanI GGYRCC 2 cut(s) 981, 1115
BbsI GAAGAC 4 cut(s) 342, 578, 1059, 1092
Bbv12I GWGCWC 2 cut(s) 696, 909
BbvI GCAGC 1 cut(s) 598
BccI CCATC 3 cut(s) 36, 773, 839
BceAI ACGGC 1 cut(s) 1088
BciT130I CCWGG 5 cut(s) 168, 269, 655, 814, 1001
BcnI CCSGG 1 cut(s) 698
BcoDI GTCTC 5 cut(s) 90, 220, 246, 666, 720
BfaI CTAG 3 cut(s) 414, 602, 953
BfoI RGCGCY 1 cut(s) 985
BfrI CTTAAG 1 cut(s) 1126
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 3 cut(s) 612, 646, 857
BlsI GCNGC 3 cut(s) 613, 647, 858
Bme1390I CCNGG 6 cut(s) 168, 269, 655, 698, 814, 1001
Bme18I GGWCC 2 cut(s) 679, 755
BmgBI CACGTC 1 cut(s) 910
BmgT120I GGNCC 3 cut(s) 84, 679, 755
BmiI GGNNCC 4 cut(s) 86, 180, 983, 1117
BmrFI CCNGG 6 cut(s) 168, 269, 655, 698, 814, 1001
BmsI GCATC 2 cut(s) 81, 273
BpiI GAAGAC 4 cut(s) 342, 578, 1059, 1092
BpmI CTGGAG 2 cut(s) 150, 706
Bpu14I TTCGAA 1 cut(s) 290
BpuEI CTTGAG 3 cut(s) 50, 576, 836
BpuMI CCSGG 1 cut(s) 698
BsaHI GRCGYC 1 cut(s) 982
BsaJI CCNNGG 5 cut(s) 37, 167, 203, 653, 654
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 244, 247, 248, 274
Bse118I RCCGGY 1 cut(s) 891
Bse1I ACTGG 3 cut(s) 427, 490, 1035
BseBI CCWGG 5 cut(s) 168, 269, 655, 814, 1001
BseDI CCNNGG 5 cut(s) 37, 167, 203, 653, 654
BseGI GGATG 5 cut(s) 47, 264, 452, 822, 1145
BseLI CCNNNNNNNGG 5 cut(s) 70, 244, 247, 248, 274
BseMII CTCAG 3 cut(s) 401, 573, 721
BseNI ACTGG 3 cut(s) 427, 490, 1035
BseRI GAGGAG 2 cut(s) 53, 959
BseSI GKGCMC 1 cut(s) 1118
BseXI GCAGC 1 cut(s) 598
Bsh1236I CGCG 2 cut(s) 408, 544
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 5 cut(s) 85, 489, 645, 895, 1097
BshNI GGYRCC 2 cut(s) 981, 1115
BsiEI CGRYCG 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 696, 909
BsiSI CCGG 2 cut(s) 698, 892
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 5 cut(s) 70, 244, 247, 248, 274
BsmAI GTCTC 5 cut(s) 90, 220, 246, 666, 720
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 5 cut(s) 85, 489, 645, 895, 1097
Bsp119I TTCGAA 1 cut(s) 290
Bsp1286I GDGCHC 3 cut(s) 696, 909, 1118
Bsp143I GATC 4 cut(s) 403, 435, 877, 948
Bsp68I TCGCGA 1 cut(s) 408
BspACI CCGC 7 cut(s) 332, 542, 614, 646, 758, 810, 857
BspANI GGCC 5 cut(s) 85, 489, 645, 895, 1097
BspCNI CTCAG 3 cut(s) 400, 574, 720
BspFNI CGCG 2 cut(s) 408, 544
BspLI GGNNCC 4 cut(s) 86, 180, 983, 1117
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 2 cut(s) 443, 943
BspT104I TTCGAA 1 cut(s) 290
BspT107I GGYRCC 2 cut(s) 981, 1115
BspTI CTTAAG 1 cut(s) 1126
BsrBI CCGCTC 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 891
BsrI ACTGG 3 cut(s) 427, 490, 1035
BssAI RCCGGY 1 cut(s) 891
BssECI CCNNGG 5 cut(s) 37, 167, 203, 653, 654
BssMI GATC 4 cut(s) 403, 435, 877, 948
BssNI GRCGYC 1 cut(s) 982
Bst2UI CCWGG 5 cut(s) 168, 269, 655, 814, 1001
Bst4CI ACNGT 3 cut(s) 38, 186, 514
Bst6I CTCTTC 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 982
BstAFI CTTAAG 1 cut(s) 1126
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 5 cut(s) 346, 546, 650, 886, 992
BstDEI CTNAG 3 cut(s) 387, 582, 707
BstDSI CCRYGG 2 cut(s) 37, 203
BstEII GGTNACC 1 cut(s) 32
BstENI CCTNNNNNAGG 2 cut(s) 68, 242
BstF5I GGATG 5 cut(s) 47, 264, 452, 822, 1145
BstFNI CGCG 2 cut(s) 408, 544
BstH2I RGCGCY 1 cut(s) 985
BstHHI GCGC 1 cut(s) 984
BstKTI GATC 4 cut(s) 406, 438, 880, 951
BstMAI GTCTC 5 cut(s) 90, 220, 246, 666, 720
BstMBI GATC 4 cut(s) 403, 435, 877, 948
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 4 cut(s) 91, 502, 862, 1122
BstNI CCWGG 5 cut(s) 168, 269, 655, 814, 1001
BstNSI RCATGY 1 cut(s) 365
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 6 cut(s) 166, 267, 653, 696, 812, 999
BstSLI GKGCMC 1 cut(s) 1118
BstUI CGCG 2 cut(s) 408, 544
BstV1I GCAGC 1 cut(s) 598
BstV2I GAAGAC 4 cut(s) 342, 578, 1059, 1092
BstX2I RGATCY 1 cut(s) 948
BstYI RGATCY 1 cut(s) 948
BsuRI GGCC 5 cut(s) 85, 489, 645, 895, 1097
BtgI CCRYGG 2 cut(s) 37, 203
BtrI CACGTC 1 cut(s) 910
BtsCI GGATG 5 cut(s) 47, 264, 452, 822, 1145
BtsIMutI CAGTG 3 cut(s) 182, 420, 483
BtuMI TCGCGA 1 cut(s) 408
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 5 cut(s) 346, 546, 650, 886, 992
CaiI CAGNNNCTG 1 cut(s) 1000
CfoI GCGC 1 cut(s) 984
Cfr10I RCCGGY 1 cut(s) 891
Cfr13I GGNCC 3 cut(s) 84, 679, 755
CviAII CATG 5 cut(s) 56, 362, 676, 872, 987
DdeI CTNAG 3 cut(s) 387, 582, 707
DinI GGCGCC 1 cut(s) 983
DpnI GATC 4 cut(s) 405, 437, 879, 950
DpnII GATC 4 cut(s) 403, 435, 877, 948
DraI TTTAAA 1 cut(s) 664
DraIII CACNNNGTG 1 cut(s) 24
DrdI GACNNNNNNGTC 1 cut(s) 973
DseDI GACNNNNNNGTC 1 cut(s) 973
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
EciI GGCGGA 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 679, 755
Eco57I CTGAAG 1 cut(s) 1079
Eco91I GGTNACC 1 cut(s) 32
EcoNI CCTNNNNNAGG 2 cut(s) 68, 242
EcoO65I GGTNACC 1 cut(s) 32
EcoRII CCWGG 5 cut(s) 166, 267, 653, 812, 999
EgeI GGCGCC 1 cut(s) 983
EheI GGCGCC 1 cut(s) 983
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 5 cut(s) 59, 365, 679, 875, 990
FaiI YATR 9 cut(s) 57, 133, 297, 363, 510, 677, 750, 873, 988
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 1 cut(s) 547
FatI CATG 5 cut(s) 55, 361, 675, 871, 986
FauI CCCGC 2 cut(s) 607, 817
FblI GTMKAC 2 cut(s) 525, 912
Fnu4HI GCNGC 3 cut(s) 612, 646, 857
FokI GGATG 4 cut(s) 54, 251, 439, 829
Fsp4HI GCNGC 3 cut(s) 612, 646, 857
FspBI CTAG 3 cut(s) 414, 602, 953
GlaI GCGC 1 cut(s) 983
GluI GCNGC 3 cut(s) 612, 646, 857
GsuI CTGGAG 2 cut(s) 150, 706
HaeII RGCGCY 1 cut(s) 985
HaeIII GGCC 5 cut(s) 85, 489, 645, 895, 1097
HapII CCGG 2 cut(s) 698, 892
HhaI GCGC 1 cut(s) 984
Hin1I GRCGYC 1 cut(s) 982
Hin1II CATG 5 cut(s) 59, 365, 679, 875, 990
Hin6I GCGC 1 cut(s) 982
HinP1I GCGC 1 cut(s) 982
HincII GTYRAC 2 cut(s) 280, 913
HindII GTYRAC 2 cut(s) 280, 913
HinfI GANTC 4 cut(s) 52, 163, 196, 822
HpaII CCGG 2 cut(s) 698, 892
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 5 cut(s) 280, 420, 526, 826, 913
Hpy188I TCNGA 4 cut(s) 195, 390, 583, 920
Hpy188III TCNNGA 7 cut(s) 14, 241, 407, 433, 723, 742, 902
Hpy8I GTNNAC 5 cut(s) 280, 420, 526, 826, 913
Hpy99I CGWCG 3 cut(s) 914, 1109, 1112
HpyAV CCTTC 5 cut(s) 238, 635, 746, 1006, 1130
HpyCH4III ACNGT 3 cut(s) 38, 186, 514
HpyCH4IV ACGT 1 cut(s) 909
HpyCH4V TGCA 3 cut(s) 59, 517, 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 91, 502, 862, 1122
HpyF3I CTNAG 3 cut(s) 387, 582, 707
HpySE526I ACGT 1 cut(s) 909
Hsp92I GRCGYC 1 cut(s) 982
Hsp92II CATG 5 cut(s) 59, 365, 679, 875, 990
HspAI GCGC 1 cut(s) 982
KasI GGCGCC 1 cut(s) 981
Kzo9I GATC 4 cut(s) 403, 435, 877, 948
LmnI GCTCC 3 cut(s) 699, 765, 794
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 2 cut(s) 81, 273
MaeI CTAG 3 cut(s) 414, 602, 953
MaeII ACGT 1 cut(s) 909
MaeIII GTNAC 5 cut(s) 11, 32, 74, 103, 964
MalI GATC 4 cut(s) 405, 437, 879, 950
MbiI CCGCTC 1 cut(s) 760
MboI GATC 4 cut(s) 403, 435, 877, 948
MflI RGATCY 1 cut(s) 948
MhlI GDGCHC 3 cut(s) 696, 909, 1118
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 3 cut(s) 477, 553, 577
MluNI TGGCCA 1 cut(s) 489
Mly113I GGCGCC 1 cut(s) 982
MlyI GAGTC 4 cut(s) 46, 157, 190, 831
MmeI TCCRAC 2 cut(s) 156, 218
Mox20I TGGCCA 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 1067
MscI TGGCCA 1 cut(s) 489
MseI TTAA 3 cut(s) 128, 663, 1127
MslI CAYNNNNRTG 2 cut(s) 269, 305
Msp20I TGGCCA 1 cut(s) 489
MspCI CTTAAG 1 cut(s) 1126
MspI CCGG 2 cut(s) 698, 892
MspR9I CCNGG 6 cut(s) 168, 269, 655, 698, 814, 1001
MvaI CCWGG 5 cut(s) 168, 269, 655, 814, 1001
MvnI CGCG 2 cut(s) 408, 544
MwoI GCNNNNNNNGC 4 cut(s) 91, 502, 862, 1122
NarI GGCGCC 1 cut(s) 982
NciI CCSGG 1 cut(s) 698
NdeII GATC 4 cut(s) 403, 435, 877, 948
NlaIII CATG 5 cut(s) 59, 365, 679, 875, 990
NlaIV GGNNCC 4 cut(s) 86, 180, 983, 1117
NmuCI GTSAC 4 cut(s) 11, 32, 103, 964
NruI TCGCGA 1 cut(s) 408
NspI RCATGY 1 cut(s) 365
NspV TTCGAA 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 305
PasI CCCWGGG 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 1067
PflFI GACNNNGTC 2 cut(s) 101, 677
PfoI TCCNGGA 1 cut(s) 696
PkrI GCNGC 3 cut(s) 613, 647, 858
Ple19I CGATCG 1 cut(s) 406
PleI GAGTC 4 cut(s) 46, 157, 190, 830
PluTI GGCGCC 1 cut(s) 985
PpsI GAGTC 4 cut(s) 46, 157, 190, 830
Psp6I CCWGG 5 cut(s) 166, 267, 653, 812, 999
PspEI GGTNACC 1 cut(s) 32
PspGI CCWGG 5 cut(s) 166, 267, 653, 812, 999
PspN4I GGNNCC 4 cut(s) 86, 180, 983, 1117
PspPI GGNCC 3 cut(s) 84, 679, 755
PstNI CAGNNNCTG 1 cut(s) 1000
PsuI RGATCY 1 cut(s) 948
PsyI GACNNNGTC 2 cut(s) 101, 677
PvuI CGATCG 1 cut(s) 406
RgaI GCGATCGC 1 cut(s) 406
RruI TCGCGA 1 cut(s) 408
RseI CAYNNNNRTG 2 cut(s) 269, 305
SalI GTCGAC 1 cut(s) 911
SaqAI TTAA 3 cut(s) 128, 663, 1127
SatI GCNGC 3 cut(s) 612, 646, 857
Sau3AI GATC 4 cut(s) 403, 435, 877, 948
Sau96I GGNCC 3 cut(s) 84, 679, 755
SchI GAGTC 4 cut(s) 46, 157, 190, 831
ScrFI CCNGG 6 cut(s) 168, 269, 655, 698, 814, 1001
SduI GDGCHC 3 cut(s) 696, 909, 1118
SfaAI GCGATCGC 1 cut(s) 406
SfaNI GCATC 2 cut(s) 81, 273
SfoI GGCGCC 1 cut(s) 983
SfuI TTCGAA 1 cut(s) 290
SgfI GCGATCGC 1 cut(s) 406
SinI GGWCC 2 cut(s) 679, 755
SmiMI CAYNNNNRTG 2 cut(s) 269, 305
SmlI CTYRAG 4 cut(s) 65, 591, 851, 1126
SmoI CTYRAG 4 cut(s) 65, 591, 851, 1126
Sse9I AATT 3 cut(s) 477, 553, 577
SsiI CCGC 7 cut(s) 332, 542, 614, 646, 758, 810, 857
SspDI GGCGCC 1 cut(s) 981
SspMI CTAG 3 cut(s) 414, 602, 953
StyD4I CCNGG 6 cut(s) 166, 267, 653, 696, 812, 999
TaaI ACNGT 3 cut(s) 38, 186, 514
TaiI ACGT 1 cut(s) 912
TaqI TCGA 6 cut(s) 290, 438, 901, 912, 977, 1110
TasI AATT 3 cut(s) 477, 553, 577
TauI GCSGC 2 cut(s) 648, 859
Tru1I TTAA 3 cut(s) 128, 663, 1127
Tru9I TTAA 3 cut(s) 128, 663, 1127
TscAI CASTG 3 cut(s) 189, 427, 490
TseFI GTSAC 4 cut(s) 11, 32, 103, 964
TseI GCWGC 1 cut(s) 611
Tsp45I GTSAC 4 cut(s) 11, 32, 103, 964
TspDTI ATGAA 5 cut(s) 638, 654, 765, 888, 1041
TspRI CASTG 3 cut(s) 189, 427, 490
Tth111I GACNNNGTC 2 cut(s) 101, 677
Vha464I CTTAAG 1 cut(s) 1126
VpaK11BI GGWCC 2 cut(s) 679, 755
XagI CCTNNNNNAGG 2 cut(s) 68, 242
XceI RCATGY 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 525, 912
XmnI GAANNNNTTC 1 cut(s) 1067
XspI CTAG 3 cut(s) 414, 602, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.