Rw5G029280
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000291
Physical Location & Seq
Forward (+)
44771574 .. 44772874
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G029280.1

Sequence Viewer

Length: 876 bp
ATGAGTCCCAAGGAGAATGAGATTTTGAGGGAGCAGATTGAAGACTTGTTGAAAAAAAGGTTCATTCGTAAAAGTATGAGTCCTTGTGCAGTTCCAGTTCTCCTTGTTCCTAAGAAGGGCAAACAATGGCGGATGTGTGTTGATAGCAGGGCCATAAATAAGATAACTATGAAGTACAGGTTTCCCATTCCTCATTTGGAGGACATGCTTGATGAACTGGAGGTGTACTTTCTGTACCAACAAACTGTTATTTTTGGGATTTTTGGTTGGAGGAGAAGGCATTCAGTTGATGAAGAGAAGGTGCGAGCAATAAGAGAATGGCCAGCTCCAAAAACAGTTTCTGAGGTGCGGAAGGAACAAGAGAGGAGTTTTGCCTTAATCAAGGGGAAACTTTGTATTGCACCAGTTCTTGCTCTTCCTAATTTTGACAAGGTATTTGAGGTTGAATGTGATGCTAGTGGCGTGGGGGTAGGTGCTGTGTTGTCACAAGAGAAGAAACCAATAGTATTCTTTAGTGAAAAGCTGAGTGAAGCTCGTCAGAAGTGGAGTACTTATGACCAAGAATTTTATGCAGTGTTCCGGGCATTGAGGCAATGGGAGCACTACCTAATTTTGAGGGAGTTTGTACTATTCGCTGATCTTCAGGCCTTGAAGTACCTTAATAGCCATAAAACTGTGACTAAGATGCATGCAAGGTGGGTGAGTTTTCTGCATAAATTCCCTTTTGTGATTCAGCATAAATCTGGTACTCTTAACTGGGTTGCAGATGCTTTGAGTAGGAAGGCTTCCTTGCTGGTCACTTTAGCTCAGGAGATTGTGGGGTTTGATCTCTTGAAGGAGTTGTATGAGGAAGATGTTGATTTCAAGGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

291

Amino Acids

34.19

Weight (kDa)

9.09

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 118 - 209 4.6e-27 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 141 - 240 6.9e-29 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 130, 349
AcoI YGGCCR 1 cut(s) 320
AcsI RAATTY 2 cut(s) 563, 716
AcuI CTGAAG 1 cut(s) 626
AfaI GTAC 7 cut(s) 176, 227, 236, 550, 627, 656, 748
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 6 cut(s) 41, 52, 446, 652, 835, 865
AjuI GAANNNNNNNTTGG 2 cut(s) 322, 354
AluBI AGCT 4 cut(s) 326, 523, 533, 806
AluI AGCT 4 cut(s) 326, 523, 533, 806
Alw21I GWGCWC 1 cut(s) 603
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 3 cut(s) 150, 320, 645
ApoI RAATTY 2 cut(s) 563, 716
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
Asp700I GAANNNNTTC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 1 cut(s) 581
AsuHPI GGTGA 1 cut(s) 712
BalI TGGCCA 1 cut(s) 322
BarI GAAGNNNNNNTAC 2 cut(s) 769, 801
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 603
BcnI CCSGG 1 cut(s) 581
BfaI CTAG 1 cut(s) 456
BmcAI AGTACT 1 cut(s) 550
Bme1390I CCNGG 1 cut(s) 581
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 581
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 3 cut(s) 442, 675, 757
BmuI ACTGGG 1 cut(s) 766
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 517, 549
BpmI CTGGAG 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 807
BpuMI CCSGG 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse1I ACTGG 4 cut(s) 95, 222, 404, 761
Bse3DI GCAATG 1 cut(s) 599
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 116
BseMI GCAATG 1 cut(s) 599
BseMII CTCAG 3 cut(s) 333, 515, 821
BseNI ACTGG 4 cut(s) 95, 222, 404, 761
BseRI GAGGAG 2 cut(s) 286, 379
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 3 cut(s) 152, 322, 647
BsiHKAI GWGCWC 1 cut(s) 603
BsiSI CCGG 1 cut(s) 580
BslI CCNNNNNNNGG 1 cut(s) 116
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 3 cut(s) 152, 322, 647
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 2 cut(s) 637, 826
BspACI CCGC 2 cut(s) 130, 349
BspANI GGCC 3 cut(s) 152, 322, 647
BspCNI CTCAG 3 cut(s) 334, 516, 820
BspQI GCTCTTC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 599
BsrI ACTGG 4 cut(s) 95, 222, 404, 761
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 637, 826
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 3 cut(s) 247, 337, 676
Bst6I CTCTTC 2 cut(s) 288, 420
BstC8I GCNNGC 3 cut(s) 306, 324, 690
BstDEI CTNAG 5 cut(s) 111, 342, 524, 681, 807
BstF5I GGATG 1 cut(s) 138
BstKTI GATC 2 cut(s) 640, 829
BstMBI GATC 2 cut(s) 637, 826
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNSI RCATGY 2 cut(s) 208, 692
BstSCI CCNGG 1 cut(s) 579
BstV2I GAAGAC 1 cut(s) 48
BsuRI GGCC 3 cut(s) 152, 322, 647
BtsCI GGATG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 3 cut(s) 306, 324, 690
CaiI CAGNNNCTG 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 7 cut(s) 175, 226, 235, 549, 626, 655, 747
CviAII CATG 2 cut(s) 205, 689
CviJI RGCY 9 cut(s) 152, 322, 326, 523, 533, 647, 666, 785, 806
CviKI_1 RGCY 9 cut(s) 152, 322, 326, 523, 533, 647, 666, 785, 806
CviQI GTAC 7 cut(s) 175, 226, 235, 549, 626, 655, 747
DdeI CTNAG 5 cut(s) 111, 342, 524, 681, 807
DpnI GATC 2 cut(s) 639, 828
DpnII GATC 2 cut(s) 637, 826
EaeI YGGCCR 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 288, 420
EarI CTCTTC 2 cut(s) 288, 420
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 626
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 208, 692
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FatI CATG 2 cut(s) 204, 688
FokI GGATG 1 cut(s) 145
FspBI CTAG 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 3 cut(s) 152, 322, 647
HapII CCGG 1 cut(s) 580
Hin1II CATG 2 cut(s) 208, 692
HinfI GANTC 3 cut(s) 4, 79, 730
HpaII CCGG 1 cut(s) 580
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 343, 540
Hpy188III TCNNGA 2 cut(s) 809, 832
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 6 cut(s) 109, 270, 292, 346, 775, 829
HpyCH4III ACNGT 3 cut(s) 247, 337, 676
HpyCH4V TGCA 7 cut(s) 89, 401, 572, 688, 692, 712, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 5 cut(s) 111, 342, 524, 681, 807
Hsp92II CATG 2 cut(s) 208, 692
Kzo9I GATC 2 cut(s) 637, 826
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 3 cut(s) 31, 331, 598
LweI GCATC 3 cut(s) 442, 675, 757
MaeI CTAG 1 cut(s) 456
MaeIII GTNAC 3 cut(s) 483, 676, 796
MalI GATC 2 cut(s) 639, 828
MboI GATC 2 cut(s) 637, 826
MboII GAAGA 6 cut(s) 53, 305, 407, 505, 632, 863
MhlI GDGCHC 1 cut(s) 603
MlsI TGGCCA 1 cut(s) 322
MluCI AATT 4 cut(s) 421, 563, 609, 716
MluNI TGGCCA 1 cut(s) 322
MlyI GAGTC 2 cut(s) 13, 88
MmeI TCCRAC 1 cut(s) 248
Mox20I TGGCCA 1 cut(s) 322
Mph1103I ATGCAT 1 cut(s) 690
MroXI GAANNNNTTC 1 cut(s) 280
MscI TGGCCA 1 cut(s) 322
MseI TTAA 3 cut(s) 377, 660, 753
Msp20I TGGCCA 1 cut(s) 322
MspI CCGG 1 cut(s) 580
MspR9I CCNGG 1 cut(s) 581
Mva1269I GAATGC 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 598
NciI CCSGG 1 cut(s) 581
NdeII GATC 2 cut(s) 637, 826
NlaIII CATG 2 cut(s) 208, 692
NmuCI GTSAC 3 cut(s) 483, 676, 796
NsiI ATGCAT 1 cut(s) 690
NspI RCATGY 2 cut(s) 208, 692
PaeI GCATGC 1 cut(s) 692
PceI AGGCCT 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 420
PctI GAATGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 730
PleI GAGTC 2 cut(s) 12, 87
PpsI GAGTC 2 cut(s) 12, 87
PspPI GGNCC 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 341
RsaI GTAC 7 cut(s) 176, 227, 236, 550, 627, 656, 748
RsaNI GTAC 7 cut(s) 175, 226, 235, 549, 626, 655, 747
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 3 cut(s) 377, 660, 753
Sau3AI GATC 2 cut(s) 637, 826
Sau96I GGNCC 1 cut(s) 150
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 2 cut(s) 13, 88
ScrFI CCNGG 1 cut(s) 581
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 3 cut(s) 442, 675, 757
SphI GCATGC 1 cut(s) 692
Sse9I AATT 4 cut(s) 421, 563, 609, 716
SseBI AGGCCT 1 cut(s) 647
SsiI CCGC 2 cut(s) 130, 349
SspMI CTAG 1 cut(s) 456
StuI AGGCCT 1 cut(s) 647
StyD4I CCNGG 1 cut(s) 579
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 3 cut(s) 247, 337, 676
TasI AATT 4 cut(s) 421, 563, 609, 716
TatI WGTACW 4 cut(s) 174, 225, 548, 625
TfiI GAWTC 1 cut(s) 730
Tru1I TTAA 3 cut(s) 377, 660, 753
Tru9I TTAA 3 cut(s) 377, 660, 753
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 3 cut(s) 483, 676, 796
Tsp45I GTSAC 3 cut(s) 483, 676, 796
TspDTI ATGAA 4 cut(s) 52, 185, 228, 306
TspRI CASTG 1 cut(s) 579
XapI RAATTY 2 cut(s) 563, 716
XceI RCATGY 2 cut(s) 208, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 280
XspI CTAG 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 550
Zsp2I ATGCAT 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.