Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000291

Physical Location & Seq

Genomic Coordinates Reverse (-)

10629402 .. 10630334

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1138700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGGCCGGATCAATTGTCTTGGGCCAAGACAAGATTACAATTCAACACGGATATCTCATGGAAGAGGTGTATTTGGAGCGGACATTTTTGTTTGTAAAGAAAGAAGAATAGGAAATGGAGAGCGTCTATCAATGATCAAGGATGCTGTTAAGTGCAAGCATGTTTGGAAGATTCAGCTCTGTCCGAAAGGAAATTATGATGAGAAGGGTACTCATATTTCACTTTACTTGGAATTGGATGGTTCAGAAGACCTTCGTGATTCTAAAGTGTTTGCTGAGTTTTCCCTGCGCATTGGGTTTTTGTTGAATGATACTTGCATAGTGGAGGCCAATGTCACTGTCCTCGGAGCTGCAAAAGCACTGCAGTCTGCTTGTCTTCAGTTTCAATGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

132

Amino Acids

14.62

Weight (kDa)

8.44

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	53 - 98	2.2e-08	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00860
fragaria_vesca	FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica	MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica	Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis	pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis	RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata	RLG00000002773
rosa_multiflora	Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii	Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa	Rorug02G0252200
rosa_samantha	Rh2DG251900 Rh7CG329900
rosa_wichuraiana	Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	80
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	45, 307, 386
AluBI	AGCT	2 cut(s)	178, 350
AluI	AGCT	2 cut(s)	178, 350
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	3 cut(s)	4, 23, 327
ApeKI	GCWGC	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	4, 23
BbsI	GAAGAC	2 cut(s)	255, 368
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	233
BclI	TGATCA	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	362
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	4, 23
BmsI	GCATC	1 cut(s)	133
BpiI	GAAGAC	2 cut(s)	255, 368
BsaJI	CCNNGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	148, 244
BseMII	CTCAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	3 cut(s)	6, 25, 329
BsiSI	CCGG	1 cut(s)	7
BsnI	GGCC	3 cut(s)	6, 25, 329
Bsp143I	GATC	2 cut(s)	9, 135
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	3 cut(s)	6, 25, 329
BspCNI	CTCAG	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	9, 135
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	148, 244
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	2 cut(s)	12, 138
BstMBI	GATC	2 cut(s)	9, 135
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	2 cut(s)	255, 368
BsuRI	GGCC	3 cut(s)	6, 25, 329
BtsCI	GGATG	2 cut(s)	148, 244
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	336, 359
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	2 cut(s)	4, 23
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	59, 161
CviJI	RGCY	5 cut(s)	6, 25, 178, 329, 350
CviKI_1	RGCY	5 cut(s)	6, 25, 178, 329, 350
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	2 cut(s)	11, 137
DpnII	GATC	2 cut(s)	9, 135
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	54
FaeI	CATG	2 cut(s)	62, 164
FaiI	YATR	5 cut(s)	60, 162, 198, 216, 320
FatI	CATG	2 cut(s)	58, 160
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	2 cut(s)	155, 251
Fsp4HI	GCNGC	1 cut(s)	351
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	6, 25, 329
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	2 cut(s)	62, 164
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	172, 260
HpaII	CCGG	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	186, 247, 347
Hpy188III	TCNNGA	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	199, 263
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	156, 318, 353, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	62, 164
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	9, 135
LmnI	GCTCC	2 cut(s)	77, 347
LpnPI	CCDG	2 cut(s)	20, 299
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	2 cut(s)	11, 137
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	2 cut(s)	9, 135
MboII	GAAGA	5 cut(s)	75, 117, 181, 260, 368
MfeI	CAATTG	1 cut(s)	13
MluCI	AATT	4 cut(s)	13, 40, 193, 233
MnlI	CCTC	3 cut(s)	59, 319, 353
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	1 cut(s)	150
MspI	CCGG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	2 cut(s)	9, 135
NlaIII	CATG	2 cut(s)	62, 164
NmuCI	GTSAC	1 cut(s)	334
NsbI	TGCGCA	1 cut(s)	290
NspI	RCATGY	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	172, 260
PkrI	GCNGC	1 cut(s)	352
PspPI	GGNCC	2 cut(s)	4, 23
PstI	CTGCAG	1 cut(s)	366
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	9, 135
Sau96I	GGNCC	2 cut(s)	4, 23
SetI	ASST	4 cut(s)	70, 180, 255, 352
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	13, 40, 193, 233
SsiI	CCGC	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	340
TasI	AATT	4 cut(s)	13, 40, 193, 233
TfiI	GAWTC	2 cut(s)	172, 260
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	2 cut(s)	343, 366
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	334
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	343, 366
XceI	RCATGY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.