pycom05g09010

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000291
Physical Location & Seq
Reverse (-)
12036599 .. 12037268
670 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09010.1

Sequence Viewer

Length: 630 bp
ATGCCTAAGGAACTACCAAAGAAGTTGCCACCAAGGAGAGAGGTCGACCATGCGATTGAGTTGGAGCCTGGTGCTAAGCCTCTCTCCAAATCACCTTATAGGATGTCGCCACCCGAGTTGGAGGAATTGAGGAAGCAACTCAACGAGCTACTTGATGCTGGCTACATCCAACCCTCCAAGTCCCCTTATGGTGCACCCGTCTTGTTCCAACGCAAGAAAGAAGGTAGCCTAAGGTTGTGCATCGACTATAGAGCATTGAACAAGATTACCATCAAGAACAAGTACCCACTTCCGTTGATCGCCGACTTATTCGATCAACTTGGTGAAGCAAGGTACTTCACAAAGTTAGATCTTCGATCGGGATACTACCAAGTGAGGATAGCCCCTGGAGACGAATCGAAGACGGCGATGGTGACCAGATATGGATCGTTCGAGTATAAAGTCATGCCATTTGGTCTGACCAATGCCCCTGCAACATTCTGCACATTGATGAACAAGGTATTCCATCCTTATCTTGACAAGTTTGTCGTGGTTTACATTGATGATATCGTTATCTATAGCAAGACATTGGAGGAGCACGTCAAGCACTTGCGCATAGTGAGAAATGCTCATTTGCCACAAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

210

Amino Acids

24.15

Weight (kDa)

9.45

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 71 - 202 7.4e-33 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
Acc16I TGCGCA 1 cut(s) 593
AccI GTMKAC 1 cut(s) 45
AclWI GGATC 1 cut(s) 433
AfaI GTAC 2 cut(s) 284, 335
AgsI TTSAA 1 cut(s) 259
AjiI CACGTC 1 cut(s) 580
AjnI CCWGG 2 cut(s) 67, 385
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 2 cut(s) 196, 579
Alw26I GTCTC 1 cut(s) 384
Alw44I GTGCAC 1 cut(s) 192
AlwI GGATC 1 cut(s) 433
Ama87I CYCGRG 1 cut(s) 113
ApaLI GTGCAC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 594
AsuHPI GGTGA 3 cut(s) 84, 335, 424
AvaI CYCGRG 1 cut(s) 113
AxyI CCTNAGG 2 cut(s) 6, 230
BaeGI GKGCMC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 196, 579
BccI CCATC 3 cut(s) 278, 403, 513
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 2 cut(s) 69, 387
BciVI GTATCC 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 384
BfmI CTRYAG 2 cut(s) 247, 556
BfuI GTATCC 1 cut(s) 356
BglII AGATCT 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 75
Bme1390I CCNGG 2 cut(s) 69, 387
BmeT110I CYCGRG 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 580
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 2 cut(s) 69, 387
BmsI GCATC 2 cut(s) 145, 249
BpiI GAAGAC 1 cut(s) 407
BplI GAGNNNNNCTC 2 cut(s) 592, 624
BpmI CTGGAG 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 75
BsaBI GATNNNNATC 2 cut(s) 269, 424
BsaJI CCNNGG 2 cut(s) 32, 385
Bse21I CCTNAGG 2 cut(s) 6, 230
Bse8I GATNNNNATC 2 cut(s) 269, 424
BseBI CCWGG 2 cut(s) 69, 387
BseDI CCNNGG 2 cut(s) 32, 385
BseGI GGATG 3 cut(s) 108, 165, 505
BseJI GATNNNNATC 2 cut(s) 269, 424
BseRI GAGGAG 1 cut(s) 587
BseSI GKGCMC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 466
Bsh1285I CGRYCG 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 359
BsiHKAI GWGCWC 2 cut(s) 196, 579
BsiHKCI CYCGRG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 384
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 196, 579
Bsp143I GATC 5 cut(s) 297, 313, 349, 356, 425
Bsp1720I GCTNAGC 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 32, 385
BssMI GATC 5 cut(s) 297, 313, 349, 356, 425
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 2 cut(s) 69, 387
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 3 cut(s) 6, 75, 230
BstEII GGTNACC 1 cut(s) 412
BstF5I GGATG 3 cut(s) 108, 165, 505
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 5 cut(s) 300, 316, 352, 359, 428
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 5 cut(s) 297, 313, 349, 356, 425
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 1 cut(s) 583
BstNI CCWGG 2 cut(s) 69, 387
BstPI GGTNACC 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 67, 385
BstSFI CTRYAG 2 cut(s) 247, 556
BstSLI GKGCMC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu36I CCTNAGG 2 cut(s) 6, 230
BsuI GTATCC 1 cut(s) 356
BtgZI GCGATG 1 cut(s) 422
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 3 cut(s) 108, 165, 505
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 594
Csp6I GTAC 2 cut(s) 283, 334
CspCI CAANNNNNGTGG 4 cut(s) 99, 134, 276, 311
CviAII CATG 2 cut(s) 50, 445
CviJI RGCY 6 cut(s) 67, 79, 148, 162, 228, 383
CviKI_1 RGCY 6 cut(s) 67, 79, 148, 162, 228, 383
CviQI GTAC 2 cut(s) 283, 334
DdeI CTNAG 3 cut(s) 6, 75, 230
DpnI GATC 5 cut(s) 299, 315, 351, 358, 427
DpnII GATC 5 cut(s) 297, 313, 349, 356, 425
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
Eco130I CCWWGG 1 cut(s) 32
Eco32I GATATC 1 cut(s) 547
Eco81I CCTNAGG 2 cut(s) 6, 230
Eco88I CYCGRG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 412
EcoO65I GGTNACC 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 67, 385
EcoRV GATATC 1 cut(s) 547
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 2 cut(s) 53, 448
FaiI YATR 9 cut(s) 51, 99, 189, 249, 423, 438, 446, 558, 596
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 49, 444
FblI GTMKAC 1 cut(s) 45
FokI GGATG 3 cut(s) 115, 152, 492
FspI TGCGCA 1 cut(s) 593
GlaI GCGC 1 cut(s) 593
GsuI CTGGAG 1 cut(s) 408
HhaI GCGC 1 cut(s) 594
Hin1II CATG 2 cut(s) 53, 448
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 395
HphI GGTGA 3 cut(s) 84, 335, 424
Hpy166II GTNNAC 3 cut(s) 46, 194, 535
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 3 cut(s) 274, 360, 515
Hpy8I GTNNAC 3 cut(s) 46, 194, 535
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 4 cut(s) 194, 240, 473, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 583
HpyF3I CTNAG 3 cut(s) 6, 75, 230
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 2 cut(s) 53, 448
HspAI GCGC 1 cut(s) 592
Kzo9I GATC 5 cut(s) 297, 313, 349, 356, 425
LmnI GCTCC 2 cut(s) 64, 574
LpnPI CCDG 7 cut(s) 54, 81, 144, 372, 399, 430, 483
LweI GCATC 2 cut(s) 145, 249
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 412
MalI GATC 5 cut(s) 299, 315, 351, 358, 427
MboI GATC 5 cut(s) 297, 313, 349, 356, 425
MboII GAAGA 2 cut(s) 344, 412
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 196, 579
MluCI AATT 1 cut(s) 125
MmeI TCCRAC 4 cut(s) 42, 99, 193, 232
MnlI CCTC 7 cut(s) 34, 90, 115, 123, 184, 369, 565
MslI CAYNNNNRTG 1 cut(s) 488
MspR9I CCNGG 2 cut(s) 69, 387
MvaI CCWGG 2 cut(s) 69, 387
MwoI GCNNNNNNNGC 1 cut(s) 583
NdeII GATC 5 cut(s) 297, 313, 349, 356, 425
NlaIII CATG 2 cut(s) 53, 448
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 412
NsbI TGCGCA 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PfeI GAWTC 1 cut(s) 395
Ple19I CGATCG 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 67, 385
PspEI GGTNACC 1 cut(s) 412
PspGI CCWGG 2 cut(s) 67, 385
PspN4I GGNNCC 1 cut(s) 66
PsuI RGATCY 1 cut(s) 349
PvuI CGATCG 1 cut(s) 359
RsaI GTAC 2 cut(s) 284, 335
RsaNI GTAC 2 cut(s) 283, 334
RseI CAYNNNNRTG 1 cut(s) 488
SalI GTCGAC 1 cut(s) 44
Sau3AI GATC 5 cut(s) 297, 313, 349, 356, 425
ScrFI CCNGG 2 cut(s) 69, 387
SduI GDGCHC 2 cut(s) 196, 579
SetI ASST 8 cut(s) 45, 97, 150, 226, 236, 335, 501, 582
SfaNI GCATC 2 cut(s) 145, 249
SfcI CTRYAG 2 cut(s) 247, 556
SmiMI CAYNNNNRTG 1 cut(s) 488
Sse9I AATT 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 67, 385
StyI CCWWGG 1 cut(s) 32
TaiI ACGT 1 cut(s) 582
TaqI TCGA 6 cut(s) 45, 243, 312, 355, 398, 432
TasI AATT 1 cut(s) 125
TfiI GAWTC 1 cut(s) 395
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 506
TspGWI ACGGA 1 cut(s) 282
VneI GTGCAC 1 cut(s) 192
XmiI GTMKAC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.