Rroxscaffold_2G00128170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000291
Physical Location & Seq
Reverse (-)
63773848 .. 63783636
9789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128170.1

Sequence Viewer

Length: 426 bp
ATGGGTGAAGTTACGAAATCAGATATTGAAGCTCTTACGACAGCGTTTACCGCTGCCATCAATTCCATGAATAATCAGATTGGAGAAATTCGTGGATTGTTGGGTGAGAGGAATAACAACAACAACAATAATCGGCATAGAGGTGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGAAGAGAGGCAATGGAAGTGACGAGTTTTGCAGCAGAATCTCAGCCAAAACATGCTGGATTTCTAATCCCTAATCATAATCATGGAATTGTTGATGAAATCCACTCAGAAGCTGAGCTCCAACACGGGACCGAGATGGCGATTGCTTCTCATGTTTATGGCCAGTTTGAGGGTGGTGAAGAGAATGTTGTTGGTGAGGTTGAGCTCTTTTATGATGAAAAATCCTCCGATTCCAGTCACTATGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.53

Weight (kDa)

5.08

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 4 cut(s) 32, 287, 292, 379
AluI AGCT 4 cut(s) 32, 287, 292, 379
Alw21I GWGCWC 2 cut(s) 294, 381
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 2 cut(s) 154, 334
ApeKI GCWGC 2 cut(s) 53, 206
ApoI RAATTY 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 4 cut(s) 17, 116, 362, 380
AvaII GGWCC 1 cut(s) 303
BalI TGGCCA 1 cut(s) 336
BanII GRGCYC 3 cut(s) 172, 294, 381
Bbv12I GWGCWC 2 cut(s) 294, 381
BbvI GCAGC 2 cut(s) 40, 218
BccI CCATC 2 cut(s) 65, 304
BisI GCNGC 2 cut(s) 54, 207
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 2 cut(s) 55, 208
Bme18I GGWCC 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 2 cut(s) 171, 304
Bpu1102I GCTNAGC 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse1I ACTGG 2 cut(s) 337, 408
Bse3DI GCAATG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 3 cut(s) 230, 279, 294
BseNI ACTGG 2 cut(s) 337, 408
BseXI GCAGC 2 cut(s) 40, 218
BshFI GGCC 2 cut(s) 156, 336
BsiHKAI GWGCWC 2 cut(s) 294, 381
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 2 cut(s) 156, 336
Bsp1286I GDGCHC 3 cut(s) 172, 294, 381
Bsp143I GATC 1 cut(s) 418
Bsp1720I GCTNAGC 1 cut(s) 288
BspACI CCGC 1 cut(s) 51
BspANI GGCC 2 cut(s) 156, 336
BspCNI CTCAG 3 cut(s) 229, 280, 293
BspLI GGNNCC 2 cut(s) 171, 304
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 2 cut(s) 337, 408
BssMI GATC 1 cut(s) 418
Bst6I CTCTTC 2 cut(s) 172, 348
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 3 cut(s) 216, 280, 288
BstKTI GATC 1 cut(s) 421
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 40, 218
BsuRI GGCC 2 cut(s) 156, 336
Cac8I GCNNGC 1 cut(s) 158
CaiI CAGNNNCTG 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 303
CviAII CATG 4 cut(s) 67, 227, 257, 326
CviJI RGCY 8 cut(s) 32, 156, 170, 220, 287, 292, 336, 379
CviKI_1 RGCY 8 cut(s) 32, 156, 170, 220, 287, 292, 336, 379
DdeI CTNAG 3 cut(s) 216, 280, 288
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 172, 348
EarI CTCTTC 2 cut(s) 172, 348
Ecl136II GAGCTC 2 cut(s) 292, 379
Eco24I GRGCYC 3 cut(s) 172, 294, 381
Eco47I GGWCC 1 cut(s) 303
Eco53kI GAGCTC 2 cut(s) 292, 379
EcoICRI GAGCTC 2 cut(s) 292, 379
EcoT38I GRGCYC 3 cut(s) 172, 294, 381
FaeI CATG 4 cut(s) 70, 230, 260, 329
FaiI YATR 9 cut(s) 68, 138, 228, 252, 258, 327, 333, 387, 417
FaqI GGGAC 1 cut(s) 316
FatI CATG 4 cut(s) 66, 226, 256, 325
Fnu4HI GCNGC 2 cut(s) 54, 207
FriOI GRGCYC 3 cut(s) 172, 294, 381
Fsp4HI GCNGC 2 cut(s) 54, 207
GluI GCNGC 2 cut(s) 54, 207
HaeIII GGCC 2 cut(s) 156, 336
Hin1II CATG 4 cut(s) 70, 230, 260, 329
HinfI GANTC 2 cut(s) 212, 404
HphI GGTGA 4 cut(s) 17, 116, 362, 380
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 4 cut(s) 22, 78, 283, 403
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 216, 280, 288
Hsp92II CATG 4 cut(s) 70, 230, 260, 329
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 2 cut(s) 175, 297
LpnPI CCDG 4 cut(s) 170, 216, 350, 421
Lsp1109I GCAGC 2 cut(s) 40, 218
MaeIII GTNAC 3 cut(s) 10, 193, 410
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 2 cut(s) 189, 365
MhlI GDGCHC 3 cut(s) 172, 294, 381
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 3 cut(s) 61, 87, 261
MluNI TGGCCA 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 7 cut(s) 102, 134, 146, 175, 337, 364, 409
Mox20I TGGCCA 1 cut(s) 336
MscI TGGCCA 1 cut(s) 336
MslI CAYNNNNRTG 3 cut(s) 141, 255, 330
Msp20I TGGCCA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 1 cut(s) 418
NlaIII CATG 4 cut(s) 70, 230, 260, 329
NlaIV GGNNCC 2 cut(s) 171, 304
NmuCI GTSAC 2 cut(s) 193, 410
NspI RCATGY 1 cut(s) 230
PfeI GAWTC 2 cut(s) 212, 404
PkrI GCNGC 2 cut(s) 55, 208
Psp124BI GAGCTC 2 cut(s) 294, 381
PspN4I GGNNCC 2 cut(s) 171, 304
PspPI GGNCC 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 287
RseI CAYNNNNRTG 3 cut(s) 141, 255, 330
SacI GAGCTC 2 cut(s) 294, 381
SatI GCNGC 2 cut(s) 54, 207
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 1 cut(s) 303
SduI GDGCHC 3 cut(s) 172, 294, 381
SetI ASST 6 cut(s) 34, 145, 289, 294, 375, 381
SinI GGWCC 1 cut(s) 303
SmiMI CAYNNNNRTG 3 cut(s) 141, 255, 330
Sse9I AATT 3 cut(s) 61, 87, 261
SsiI CCGC 1 cut(s) 51
SstI GAGCTC 2 cut(s) 294, 381
TaqII GACCGA 1 cut(s) 320
TasI AATT 3 cut(s) 61, 87, 261
TfiI GAWTC 2 cut(s) 212, 404
TseFI GTSAC 2 cut(s) 193, 410
TseI GCWGC 2 cut(s) 53, 206
Tsp45I GTSAC 2 cut(s) 193, 410
TspDTI ATGAA 3 cut(s) 83, 285, 405
VpaK11BI GGWCC 1 cut(s) 303
XapI RAATTY 1 cut(s) 87
XceI RCATGY 1 cut(s) 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.