Rw5G012010
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000291
Physical Location & Seq
Forward (+)
14025148 .. 14026479
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G012010.1

Sequence Viewer

Length: 1275 bp
ATGGGTGAAGTTACGAAATCAGATATTGAAGCTCTTACAGCAGCGTTTACCGCTGCCATCAATTCCATGAATAATCAGATTGGAGAAATTCGTGGACTGTTGGGTGAGAGGAACAACAACAATAATCGGCATAGAGGTGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTGGTGAAGTTGGACAAGCTGACCAGGATTACAAAGTCAAGGCCGAAATTCCTTTCTTTTCAGGCAACTTGGGTGTAGAAGATTATTTGGATTGGCAGCTTCAAGTGGACAGATTCTTTGAGATTATGGAAGTGCCTGAACACAAGCAAGTTAAGCATGTTGCCTGGAGATTAAAGAGTACTGCTGCAGTATGGTGGGATAAGTTGCAGAACACTCGAAAGAAGCAGAGGAAGCAGAGTGTTAGAACATGGCGAAGAATGAAGCAGTTGATGATGGAGAGGTTCTTGCCAGATGATTATGAGCAGATTCTATACAGGCTGTATATTGAATGTGTTCAAGGAACTAGGACGGTGGCTGAATATACAGCTGAGTTCTTACGCTATTCGGAGCGTAATGAATTAGGAGAAACTGAAGGCCAGAAGGTGGCTCGCTATATCAGTGGACTGAAGCCTTCCATTCAGGAGAGAATTGGGTTACAAACTGTTCATACTATGGCCGAAGTTACAAACCTAGCATTGAAGGCAGAGTTGTTGGAGAAGCCTTCGCGAGCTTCTTCTTTCCAGAGGTATAACTACCAAAGGAGTCCAGATTTGGTTAACGCCTCAACTGTCAAGGGTACAACCACGTTGCAGAGAGCAGCAAACGCTTTTAAAGCTTCTAATCCTCCTTTTAAAGGCTCGGGTAGTTCTAACAGTTCTATTGGTGCTCAAAATAGAGCCCCGAATCAAAGGTTTAATAATCCTTATGCTAGACTTACAGGAGATGTCTGTTATCAATGCAACAAGCCTGGGCATAGATCTAATGTGTGTCCTGAGAGGAGACAAACTGCCCTTATAGATGATTATGATGAGGACGAAGAAGTTGGGAGAGATGGTGATTATGATGGGGCTGAGTTTGCGGAGGAGGAATCCCCTGAGAAGGTTAATATTGTGTTGCAGCGGGTTCTATTATGTCATAAAGAAGAGGGGCAGCGACGCAATATTTTCAGGTCACTTTGTTCCATTAATAACAAAGTGTGCAATTTAATTGTGGATAATGGAAGCTGCGAAAATTTTGTAGCCAAGAAACTGGTGGAGTATTTTGCAGTTACCTACGCAGCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

424

Amino Acids

48.32

Weight (kDa)

8.48

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 97 - 235 1.8e-08 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 109 - 207 7e-14 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 592
AccII CGCG 1 cut(s) 715
AciI CCGC 3 cut(s) 51, 1067, 1108
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 3 cut(s) 87, 216, 1219
AcuI CTGAAG 2 cut(s) 600, 635
AcvI CACGTG 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 2 cut(s) 349, 787
AfiI CCNNNNNNNGG 3 cut(s) 592, 842, 1087
AgsI TTSAA 5 cut(s) 29, 272, 497, 506, 688
AjnI CCWGG 3 cut(s) 192, 332, 955
AluBI AGCT 7 cut(s) 32, 188, 268, 536, 719, 824, 1212
AluI AGCT 7 cut(s) 32, 188, 268, 536, 719, 824, 1212
Alw21I GWGCWC 1 cut(s) 877
Alw26I GTCTC 1 cut(s) 982
Ama87I CYCGRG 1 cut(s) 847
AoxI GGCC 4 cut(s) 148, 210, 583, 663
ApeKI GCWGC 9 cut(s) 41, 53, 265, 353, 806, 1105, 1138, 1212, 1265
ApoI RAATTY 3 cut(s) 87, 216, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AseI ATTAAT 1 cut(s) 1173
Asp700I GAANNNNTTC 1 cut(s) 501
AsuHPI GGTGA 4 cut(s) 17, 116, 185, 1055
AvaI CYCGRG 1 cut(s) 847
BanII GRGCYC 2 cut(s) 166, 889
BbrPI CACGTG 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 877
BbvI GCAGC 8 cut(s) 40, 53, 277, 340, 818, 1117, 1150, 1199
BccI CCATC 4 cut(s) 65, 436, 1034, 1046
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 3 cut(s) 194, 334, 957
BcoDI GTCTC 1 cut(s) 982
BfaI CTAG 3 cut(s) 513, 680, 918
BfmI CTRYAG 1 cut(s) 354
BglII AGATCT 1 cut(s) 965
BisI GCNGC 9 cut(s) 42, 54, 266, 354, 807, 1106, 1139, 1213, 1266
BlsI GCNGC 9 cut(s) 43, 55, 267, 355, 808, 1107, 1140, 1214, 1267
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 3 cut(s) 194, 334, 957
BmeT110I CYCGRG 1 cut(s) 847
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 3 cut(s) 194, 334, 957
BpmI CTGGAG 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 956
BsaXI ACNNNNNCTCC 2 cut(s) 1027, 1057
Bsc4I CCNNNNNNNGG 3 cut(s) 592, 842, 1087
Bse1I ACTGG 1 cut(s) 1242
BseBI CCWGG 3 cut(s) 194, 334, 957
BseDI CCNNGG 1 cut(s) 956
BseLI CCNNNNNNNGG 3 cut(s) 592, 842, 1087
BseMII CTCAG 4 cut(s) 528, 972, 1050, 1074
BseNI ACTGG 1 cut(s) 1242
BseRI GAGGAG 2 cut(s) 1000, 1085
BseXI GCAGC 8 cut(s) 40, 53, 277, 340, 818, 1117, 1150, 1199
Bsh1236I CGCG 1 cut(s) 715
BshFI GGCC 4 cut(s) 150, 212, 585, 665
BsiHKAI GWGCWC 1 cut(s) 877
BsiHKCI CYCGRG 1 cut(s) 847
BslI CCNNNNNNNGG 3 cut(s) 592, 842, 1087
BsmAI GTCTC 1 cut(s) 982
BsnI GGCC 4 cut(s) 150, 212, 585, 665
BsoBI CYCGRG 1 cut(s) 847
Bsp1286I GDGCHC 3 cut(s) 166, 877, 889
Bsp143I GATC 1 cut(s) 965
Bsp68I TCGCGA 1 cut(s) 715
BspACI CCGC 3 cut(s) 51, 1067, 1108
BspANI GGCC 4 cut(s) 150, 212, 585, 665
BspCNI CTCAG 4 cut(s) 529, 973, 1051, 1075
BspFNI CGCG 1 cut(s) 715
BspHI TCATGA 1 cut(s) 1271
BspLI GGNNCC 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 358
BsrI ACTGG 1 cut(s) 1242
BssECI CCNNGG 1 cut(s) 956
BssMI GATC 1 cut(s) 965
Bst2UI CCWGG 3 cut(s) 194, 334, 957
Bst4CI ACNGT 5 cut(s) 99, 520, 652, 778, 863
Bst6I CTCTTC 1 cut(s) 1125
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 3 cut(s) 152, 598, 717
BstDEI CTNAG 4 cut(s) 537, 981, 1059, 1083
BstENI CCTNNNNNAGG 1 cut(s) 840
BstFNI CGCG 1 cut(s) 715
BstKTI GATC 1 cut(s) 968
BstMAI GTCTC 1 cut(s) 982
BstMBI GATC 1 cut(s) 965
BstMWI GCNNNNNNNGC 8 cut(s) 38, 50, 322, 400, 689, 812, 821, 1064
BstNI CCWGG 3 cut(s) 194, 334, 957
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 3 cut(s) 192, 332, 955
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 1 cut(s) 715
BstV1I GCAGC 8 cut(s) 40, 53, 277, 340, 818, 1117, 1150, 1199
BstX2I RGATCY 1 cut(s) 965
BstXI CCANNNNNNTGG 1 cut(s) 1237
BstYI RGATCY 1 cut(s) 965
BsuRI GGCC 4 cut(s) 150, 212, 585, 665
BtsIMutI CAGTG 1 cut(s) 613
BtuMI TCGCGA 1 cut(s) 715
Cac8I GCNNGC 3 cut(s) 152, 598, 717
CciI TCATGA 1 cut(s) 1271
CseI GACGC 1 cut(s) 1152
Csp6I GTAC 2 cut(s) 348, 786
CviAII CATG 4 cut(s) 67, 326, 417, 1272
CviQI GTAC 2 cut(s) 348, 786
DdeI CTNAG 4 cut(s) 537, 981, 1059, 1083
DpnI GATC 1 cut(s) 967
DpnII GATC 1 cut(s) 965
DraI TTTAAA 2 cut(s) 820, 841
DraIII CACNNNGTG 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 1125
EarI CTCTTC 1 cut(s) 1125
Eco24I GRGCYC 2 cut(s) 166, 889
Eco57I CTGAAG 2 cut(s) 600, 635
Eco72I CACGTG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 847
EcoNI CCTNNNNNAGG 1 cut(s) 840
EcoRII CCWGG 3 cut(s) 192, 332, 955
EcoT38I GRGCYC 2 cut(s) 166, 889
FaeI CATG 4 cut(s) 70, 329, 420, 1275
FatI CATG 4 cut(s) 66, 325, 416, 1271
FauI CCCGC 1 cut(s) 1101
Fnu4HI GCNGC 9 cut(s) 42, 54, 266, 354, 807, 1106, 1139, 1213, 1266
FriOI GRGCYC 2 cut(s) 166, 889
Fsp4HI GCNGC 9 cut(s) 42, 54, 266, 354, 807, 1106, 1139, 1213, 1266
FspBI CTAG 3 cut(s) 513, 680, 918
GluI GCNGC 9 cut(s) 42, 54, 266, 354, 807, 1106, 1139, 1213, 1266
GsuI CTGGAG 1 cut(s) 355
HaeIII GGCC 4 cut(s) 150, 212, 585, 665
HgaI GACGC 1 cut(s) 1152
Hin1II CATG 4 cut(s) 70, 329, 420, 1275
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 5 cut(s) 282, 475, 751, 892, 1076
HpaI GTTAAC 1 cut(s) 766
HphI GGTGA 4 cut(s) 17, 116, 185, 1055
Hpy166II GTNNAC 5 cut(s) 48, 95, 277, 611, 766
Hpy188I TCNGA 3 cut(s) 22, 78, 556
Hpy188III TCNNGA 6 cut(s) 629, 714, 730, 755, 980, 1272
Hpy8I GTNNAC 5 cut(s) 48, 95, 277, 611, 766
Hpy99I CGWCG 1 cut(s) 1146
HpyAV CCTTC 7 cut(s) 137, 575, 583, 630, 682, 720, 1081
HpyCH4III ACNGT 5 cut(s) 99, 520, 652, 778, 863
HpyCH4IV ACGT 2 cut(s) 169, 794
HpyCH4V TGCA 7 cut(s) 356, 376, 799, 948, 1105, 1188, 1253
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 50, 322, 400, 689, 812, 821, 1064
HpyF3I CTNAG 4 cut(s) 537, 981, 1059, 1083
HpySE526I ACGT 2 cut(s) 169, 794
Hsp92II CATG 4 cut(s) 70, 329, 420, 1275
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 1 cut(s) 965
LmnI GCTCC 2 cut(s) 169, 556
Lsp1109I GCAGC 8 cut(s) 40, 53, 277, 340, 818, 1117, 1150, 1199
MaeI CTAG 3 cut(s) 513, 680, 918
MaeII ACGT 2 cut(s) 169, 794
MaeIII GTNAC 5 cut(s) 10, 642, 670, 1158, 1255
MalI GATC 1 cut(s) 967
MboI GATC 1 cut(s) 965
MboII GAAGA 5 cut(s) 260, 435, 714, 1037, 1142
MflI RGATCY 1 cut(s) 965
MhlI GDGCHC 3 cut(s) 166, 877, 889
MluCI AATT 8 cut(s) 61, 87, 216, 566, 636, 1189, 1194, 1219
MlyI GAGTC 1 cut(s) 760
MmeI TCCRAC 2 cut(s) 160, 681
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 9 cut(s) 321, 341, 765, 819, 840, 903, 1092, 1173, 1193
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 3 cut(s) 53, 536, 1108
MspR9I CCNGG 3 cut(s) 194, 334, 957
MvaI CCWGG 3 cut(s) 194, 334, 957
MvnI CGCG 1 cut(s) 715
MwoI GCNNNNNNNGC 8 cut(s) 38, 50, 322, 400, 689, 812, 821, 1064
NdeII GATC 1 cut(s) 965
NlaIII CATG 4 cut(s) 70, 329, 420, 1275
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 1158
NruI TCGCGA 1 cut(s) 715
NspI RCATGY 1 cut(s) 329
PagI TCATGA 1 cut(s) 1271
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 4 cut(s) 282, 475, 892, 1076
PflMI CCANNNNNTGG 1 cut(s) 592
PkrI GCNGC 9 cut(s) 43, 55, 267, 355, 808, 1107, 1140, 1214, 1267
PleI GAGTC 1 cut(s) 759
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
PpsI GAGTC 1 cut(s) 759
Ppu21I YACGTR 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 1173
Psp6I CCWGG 3 cut(s) 192, 332, 955
PspCI CACGTG 1 cut(s) 170
PspGI CCWGG 3 cut(s) 192, 332, 955
PspN4I GGNNCC 1 cut(s) 165
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 1 cut(s) 965
PvuII CAGCTG 1 cut(s) 536
RruI TCGCGA 1 cut(s) 715
RsaI GTAC 2 cut(s) 349, 787
RsaNI GTAC 2 cut(s) 348, 786
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 9 cut(s) 321, 341, 765, 819, 840, 903, 1092, 1173, 1193
SatI GCNGC 9 cut(s) 42, 54, 266, 354, 807, 1106, 1139, 1213, 1266
Sau3AI GATC 1 cut(s) 965
ScaI AGTACT 1 cut(s) 349
SchI GAGTC 1 cut(s) 760
ScrFI CCNGG 3 cut(s) 194, 334, 957
SduI GDGCHC 3 cut(s) 166, 877, 889
SfcI CTRYAG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 8 cut(s) 61, 87, 216, 566, 636, 1189, 1194, 1219
SsiI CCGC 3 cut(s) 51, 1067, 1108
SspI AATATT 2 cut(s) 1096, 1150
SspMI CTAG 3 cut(s) 513, 680, 918
StyD4I CCNGG 3 cut(s) 192, 332, 955
TaaI ACNGT 5 cut(s) 99, 520, 652, 778, 863
TaiI ACGT 2 cut(s) 172, 797
TaqI TCGA 1 cut(s) 385
TasI AATT 8 cut(s) 61, 87, 216, 566, 636, 1189, 1194, 1219
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 4 cut(s) 282, 475, 892, 1076
Tru1I TTAA 9 cut(s) 321, 341, 765, 819, 840, 903, 1092, 1173, 1193
Tru9I TTAA 9 cut(s) 321, 341, 765, 819, 840, 903, 1092, 1173, 1193
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 1 cut(s) 1158
TseI GCWGC 9 cut(s) 41, 53, 265, 353, 806, 1105, 1138, 1212, 1265
Tsp45I GTSAC 1 cut(s) 1158
TspDTI ATGAA 4 cut(s) 83, 443, 579, 644
TspRI CASTG 1 cut(s) 613
Van91I CCANNNNNTGG 1 cut(s) 592
VspI ATTAAT 1 cut(s) 1173
XagI CCTNNNNNAGG 1 cut(s) 840
XapI RAATTY 3 cut(s) 87, 216, 1219
XceI RCATGY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 1237
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 3 cut(s) 513, 680, 918
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.