FvH4_5g21912
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000291
Physical Location & Seq
Reverse (-)
13282664 .. 13284930
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21912.t1

Sequence Viewer

Length: 1179 bp
ATGGGTGACGCACCGATTACTAGAGCAGACCGAGAAGGTATCCTAGAAGGTGTTACTGCGAATTTTACCGTAGCCCTTGCTACGTTGACTAATCAGGTGAACGAATTGAAGACTGATAATAACAATAGGAAGCGTGGAGAAGGCAGAGCTATTCCTCAACATAGGGTTCCACGAGGGAGAGGAACCACAATTGCTAGCAGCTCTGAGTCTGATTCAGAAGATGAAGTTGTTGATCTGGCGCAATTAGGGCAAGATGATAAGGATTTCAGGATGAAGATTCTTTACAGGATGTACCTAGATTGTGTTCAAGGGGCGAAGACTGTAACAGAGTATACCGTTGAGTTTGTGCGTCTTTCTGAGCGCAATGACTTAGGCGAATCTGAAGGGCAGAAGGTTGCTCGGTACATCAGTGGGTTGAGACCTTCCATACAAGAGAAGATTGGCTTACAAACTATGTGGTCTATGACTGAGGCTGCAAGTTTGGCGATAAAGGCGGAGCTGATGGAGAGATCCCCTAGAGTTTCTTTTCAGTTTCCAAGATTCACTAGTCAGAGGAGTACTAAAGTCGGGAGTTCTGTTGGAGATAAAGGGAAAACAATGACGCAGAATACGAGTGGAATGACCACTAGGGCTTCTAGTGCTGTTAACAAAGAGGGTGGCGTTTCTGGTTTTGGCAGTACTAGCAGGGCAACTCGGGCAGCACCTGTGCAGCGACCTTTTAACCCTTATACAAGGCCTTTCCCAGGTACTTGTTATAGGTGTTTACAGCCTGGTCATAGATCCAACGAGTGTACTGCCCCTCCGAAGGTGGTTAAAGCAGTTCAGGCTTTAGTCGAGGCCTGTGAGGGGGAAGACGAGGCGGAGGAAGGAGGCGATGACTATGAAGGGGCTGAATTTGCAGTGGAAGATTCTCCAGAAAAGGTGAACATTGTATTGCAGAGAATTCTGTTGTCTCCCAGGAAGGAGGACGGTCAATGTAAGAACCTTTTCAGATCGCATTGTTCTGTCAACAACAAGGTTTCTAAAGGTCAGTCTCAAAATACTGGTCTTTATACACCTTTACCTGTTCCTGAAGACATTTGGCAGGATCTTTCAATGGATTTTGTGCTGGGTTTGCCGCGTACACAGAGGGGAGCGGATTCTGTATTTGTGGTTGTTGACAGCTTTGAACAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

393

Amino Acids

43.12

Weight (kDa)

5.59

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1136
AccI GTMKAC 1 cut(s) 332
AccII CGCG 1 cut(s) 1120
AciI CCGC 4 cut(s) 494, 860, 1118, 1136
AclWI GGATC 3 cut(s) 504, 774, 1095
AcsI RAATTY 3 cut(s) 61, 893, 942
AcuI CTGAAG 2 cut(s) 402, 1092
AfaI GTAC 7 cut(s) 293, 404, 559, 679, 748, 793, 1123
AfiI CCNNNNNNNGG 3 cut(s) 743, 805, 846
AgsI TTSAA 4 cut(s) 109, 308, 1095, 1169
AhlI ACTAGT 1 cut(s) 545
AjnI CCWGG 3 cut(s) 742, 769, 956
AluBI AGCT 4 cut(s) 149, 201, 499, 1164
AluI AGCT 4 cut(s) 149, 201, 499, 1164
Alw26I GTCTC 3 cut(s) 412, 957, 1038
AlwI GGATC 3 cut(s) 504, 774, 1095
AlwNI CAGNNNCTG 1 cut(s) 704
Ama87I CYCGRG 1 cut(s) 693
AoxI GGCC 2 cut(s) 734, 837
ApeKI GCWGC 4 cut(s) 198, 473, 698, 709
ApoI RAATTY 3 cut(s) 61, 893, 942
ArsI GACNNNNNNTTYG 2 cut(s) 1030, 1062
Asp700I GAANNNNTTC 1 cut(s) 986
AspLEI GCGC 2 cut(s) 241, 363
AsuHPI GGTGA 3 cut(s) 17, 109, 934
AsuNHI GCTAGC 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 693
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
BauI CACGAG 1 cut(s) 171
BbsI GAAGAC 4 cut(s) 116, 323, 858, 1080
BbvI GCAGC 4 cut(s) 210, 460, 710, 721
BccI CCATC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 776, 810
BciT130I CCWGG 3 cut(s) 744, 771, 958
BciVI GTATCC 1 cut(s) 50
BcoDI GTCTC 3 cut(s) 412, 957, 1038
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 9 cut(s) 21, 44, 195, 296, 516, 546, 627, 636, 681
BfuI GTATCC 1 cut(s) 50
BisI GCNGC 5 cut(s) 199, 474, 699, 710, 1118
BlsI GCNGC 5 cut(s) 200, 475, 700, 711, 1119
BmcAI AGTACT 2 cut(s) 559, 679
Bme1390I CCNGG 3 cut(s) 744, 771, 958
BmeT110I CYCGRG 1 cut(s) 693
BmiI GGNNCC 2 cut(s) 168, 184
BmrFI CCNGG 3 cut(s) 744, 771, 958
BmtI GCTAGC 1 cut(s) 198
BpiI GAAGAC 4 cut(s) 116, 323, 858, 1080
BpmI CTGGAG 1 cut(s) 897
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 2 cut(s) 742, 956
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 3 cut(s) 743, 805, 846
Bse1I ACTGG 1 cut(s) 1048
Bse3DI GCAATG 1 cut(s) 370
BseBI CCWGG 3 cut(s) 744, 771, 958
BseDI CCNNGG 2 cut(s) 742, 956
BseGI GGATG 2 cut(s) 276, 294
BseLI CCNNNNNNNGG 3 cut(s) 743, 805, 846
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 3 cut(s) 195, 348, 459
BseNI ACTGG 1 cut(s) 1048
BseRI GAGGAG 1 cut(s) 568
BseXI GCAGC 4 cut(s) 210, 460, 710, 721
BseYI CCCAGC 1 cut(s) 1108
BsgI GTGCAG 1 cut(s) 728
Bsh1236I CGCG 1 cut(s) 1120
BshFI GGCC 2 cut(s) 736, 839
BsiHKCI CYCGRG 1 cut(s) 693
BslI CCNNNNNNNGG 3 cut(s) 743, 805, 846
BsmAI GTCTC 3 cut(s) 412, 957, 1038
BsnI GGCC 2 cut(s) 736, 839
Bso31I GGTCTC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 693
Bsp143I GATC 5 cut(s) 232, 509, 779, 992, 1087
BspACI CCGC 4 cut(s) 494, 860, 1118, 1136
BspANI GGCC 2 cut(s) 736, 839
BspCNI CTCAG 3 cut(s) 196, 349, 460
BspFNI CGCG 1 cut(s) 1120
BspLI GGNNCC 2 cut(s) 168, 184
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 3 cut(s) 504, 774, 1095
BspTNI GGTCTC 1 cut(s) 412
BsrBI CCGCTC 1 cut(s) 1136
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 1 cut(s) 1048
BssECI CCNNGG 2 cut(s) 742, 956
BssMI GATC 5 cut(s) 232, 509, 779, 992, 1087
BssNAI GTATAC 1 cut(s) 333
BssSI CACGAG 1 cut(s) 171
Bst1107I GTATAC 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 171
Bst2UI CCWGG 3 cut(s) 744, 771, 958
Bst4CI ACNGT 4 cut(s) 70, 322, 337, 971
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 4 cut(s) 204, 357, 370, 468
BstENI CCTNNNNNAGG 1 cut(s) 741
BstF5I GGATG 2 cut(s) 276, 294
BstFNI CGCG 1 cut(s) 1120
BstHHI GCGC 2 cut(s) 241, 363
BstKTI GATC 5 cut(s) 235, 512, 782, 995, 1090
BstMAI GTCTC 3 cut(s) 412, 957, 1038
BstMBI GATC 5 cut(s) 232, 509, 779, 992, 1087
BstMWI GCNNNNNNNGC 9 cut(s) 247, 482, 491, 638, 681, 695, 824, 896, 1114
BstNI CCWGG 3 cut(s) 744, 771, 958
BstSCI CCNGG 3 cut(s) 742, 769, 956
BstUI CGCG 1 cut(s) 1120
BstV1I GCAGC 4 cut(s) 210, 460, 710, 721
BstV2I GAAGAC 4 cut(s) 116, 323, 858, 1080
BstX2I RGATCY 3 cut(s) 509, 779, 1087
BstYI RGATCY 3 cut(s) 509, 779, 1087
BstZ17I GTATAC 1 cut(s) 333
BsuI GTATCC 1 cut(s) 50
BsuRI GGCC 2 cut(s) 736, 839
BtgZI GCGATG 1 cut(s) 888
BtsCI GGATG 2 cut(s) 276, 294
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 2 cut(s) 415, 906
Cac8I GCNNGC 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 704
CfoI GCGC 2 cut(s) 241, 363
CseI GACGC 3 cut(s) 17, 338, 610
Csp6I GTAC 7 cut(s) 292, 403, 558, 678, 747, 792, 1122
CspCI CAANNNNNGTGG 4 cut(s) 437, 472, 637, 672
CviQI GTAC 7 cut(s) 292, 403, 558, 678, 747, 792, 1122
DdeI CTNAG 4 cut(s) 204, 357, 370, 468
DpnI GATC 5 cut(s) 234, 511, 781, 994, 1089
DpnII GATC 5 cut(s) 232, 509, 779, 992, 1087
EciI GGCGGA 2 cut(s) 509, 875
Eco147I AGGCCT 2 cut(s) 736, 839
Eco31I GGTCTC 1 cut(s) 412
Eco57I CTGAAG 2 cut(s) 402, 1092
Eco88I CYCGRG 1 cut(s) 693
EcoNI CCTNNNNNAGG 1 cut(s) 741
EcoRI GAATTC 1 cut(s) 942
EcoRII CCWGG 3 cut(s) 742, 769, 956
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 5 cut(s) 199, 474, 699, 710, 1118
FokI GGATG 2 cut(s) 283, 301
Fsp4HI GCNGC 5 cut(s) 199, 474, 699, 710, 1118
FspBI CTAG 9 cut(s) 21, 44, 195, 296, 516, 546, 627, 636, 681
GlaI GCGC 2 cut(s) 240, 362
GluI GCNGC 5 cut(s) 199, 474, 699, 710, 1118
GsaI CCCAGC 1 cut(s) 1112
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 2 cut(s) 736, 839
HgaI GACGC 3 cut(s) 17, 338, 610
HhaI GCGC 2 cut(s) 241, 363
Hin6I GCGC 2 cut(s) 239, 361
HinP1I GCGC 2 cut(s) 239, 361
HincII GTYRAC 4 cut(s) 87, 646, 1009, 1159
HindII GTYRAC 4 cut(s) 87, 646, 1009, 1159
HinfI GANTC 7 cut(s) 206, 212, 277, 377, 540, 908, 1139
HpaI GTTAAC 1 cut(s) 646
HphI GGTGA 3 cut(s) 17, 109, 934
Hpy188I TCNGA 8 cut(s) 205, 211, 217, 358, 382, 552, 804, 992
Hpy188III TCNNGA 4 cut(s) 268, 568, 914, 1070
HpyCH4III ACNGT 4 cut(s) 70, 322, 337, 971
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 4 cut(s) 476, 709, 899, 937
HpyF10VI GCNNNNNNNGC 9 cut(s) 247, 482, 491, 638, 681, 695, 824, 896, 1114
HpyF3I CTNAG 4 cut(s) 204, 357, 370, 468
HpySE526I ACGT 1 cut(s) 83
HspAI GCGC 2 cut(s) 239, 361
KspAI GTTAAC 1 cut(s) 646
Kzo9I GATC 5 cut(s) 232, 509, 779, 992, 1087
LmnI GCTCC 2 cut(s) 496, 1133
Lsp1109I GCAGC 4 cut(s) 210, 460, 710, 721
MaeI CTAG 9 cut(s) 21, 44, 195, 296, 516, 546, 627, 636, 681
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 3 cut(s) 5, 52, 322
MalI GATC 5 cut(s) 234, 511, 781, 994, 1089
MbiI CCGCTC 1 cut(s) 1136
MboI GATC 5 cut(s) 232, 509, 779, 992, 1087
MboII GAAGA 8 cut(s) 121, 230, 286, 328, 448, 863, 917, 1085
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 3 cut(s) 509, 779, 1087
MluCI AATT 6 cut(s) 61, 104, 189, 242, 893, 942
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 2 cut(s) 559, 807
MroXI GAANNNNTTC 1 cut(s) 986
MseI TTAA 3 cut(s) 645, 720, 813
MspR9I CCNGG 3 cut(s) 744, 771, 958
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 3 cut(s) 744, 771, 958
MvnI CGCG 1 cut(s) 1120
MwoI GCNNNNNNNGC 9 cut(s) 247, 482, 491, 638, 681, 695, 824, 896, 1114
NdeII GATC 5 cut(s) 232, 509, 779, 992, 1087
NheI GCTAGC 1 cut(s) 194
NlaIV GGNNCC 2 cut(s) 168, 184
NmuCI GTSAC 1 cut(s) 5
PceI AGGCCT 2 cut(s) 736, 839
PcsI WCGNNNNNNNCGW 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 986
PfeI GAWTC 6 cut(s) 212, 277, 377, 540, 908, 1139
PkrI GCNGC 5 cut(s) 200, 475, 700, 711, 1119
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 742, 769, 956
PspFI CCCAGC 1 cut(s) 1108
PspGI CCWGG 3 cut(s) 742, 769, 956
PspN4I GGNNCC 2 cut(s) 168, 184
PstNI CAGNNNCTG 1 cut(s) 704
PsuI RGATCY 3 cut(s) 509, 779, 1087
RsaI GTAC 7 cut(s) 293, 404, 559, 679, 748, 793, 1123
RsaNI GTAC 7 cut(s) 292, 403, 558, 678, 747, 792, 1122
SaqAI TTAA 3 cut(s) 645, 720, 813
SatI GCNGC 5 cut(s) 199, 474, 699, 710, 1118
Sau3AI GATC 5 cut(s) 232, 509, 779, 992, 1087
ScaI AGTACT 2 cut(s) 559, 679
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 3 cut(s) 744, 771, 958
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 6 cut(s) 61, 104, 189, 242, 893, 942
SseBI AGGCCT 2 cut(s) 736, 839
SsiI CCGC 4 cut(s) 494, 860, 1118, 1136
SspMI CTAG 9 cut(s) 21, 44, 195, 296, 516, 546, 627, 636, 681
StuI AGGCCT 2 cut(s) 736, 839
StyD4I CCNGG 3 cut(s) 742, 769, 956
TaaI ACNGT 4 cut(s) 70, 322, 337, 971
TaiI ACGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 834
TaqII GACCGA 1 cut(s) 45
TasI AATT 6 cut(s) 61, 104, 189, 242, 893, 942
TatI WGTACW 3 cut(s) 557, 677, 791
TauI GCSGC 1 cut(s) 1120
TfiI GAWTC 6 cut(s) 212, 277, 377, 540, 908, 1139
Tru1I TTAA 3 cut(s) 645, 720, 813
Tru9I TTAA 3 cut(s) 645, 720, 813
TscAI CASTG 2 cut(s) 415, 906
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 4 cut(s) 198, 473, 698, 709
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 237, 287, 897
TspRI CASTG 2 cut(s) 415, 906
XagI CCTNNNNNAGG 1 cut(s) 741
XapI RAATTY 3 cut(s) 61, 893, 942
XmiI GTMKAC 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 986
XspI CTAG 9 cut(s) 21, 44, 195, 296, 516, 546, 627, 636, 681
ZrmI AGTACT 2 cut(s) 559, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.