FvH4_6g14992

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000291
Physical Location & Seq
Forward (+)
9304872 .. 9305923
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14992.t1

Sequence Viewer

Length: 864 bp
ATGACCAAGAAGCTTCTGTTTTTGGGTTATGTGGTTAGCTCAGAAGGTATACATGTTGACCAAGACAAGGTGAAAGCAATTCAGGAATGGCCTACACCTAAAACAGTTAGTGACGTACGAAGTTTTCATGGATTGGCAACCTTCTATCGCCGCTTTGTGCCAAATTTCAGTGCTATCACTGCACCAATAACCGAATGTCTGAAGAAAGGCATATTTCAATGGGGTGAAGAACAGGAAAAGAGTTTTGCCATGATCAAGTACAAGTTAAGCACAGCACCGGTACTAGCTATGCCTGATTTTGACAAGATTTTTGAGGTAGAAACTGATGCTTGTGGGGTAGGAATAGGGGATGTCTTATCTCAAGAAAGGAAGTCAGTGACGTATTTTAGTGAGAAGCTTAATGAAGCTAGGCAAAAGTGGAGTACATACGACCAAGAGTTCTATGCAGTTGTTCGGGCCTTGAAACAGTGGGAACATTATCTTGTGCAGAGGGAATTTGTGCTATACACCGACCATCAAGCCTTGAAATACATCAACAGTCAAAGAAGTGTGAACAAAATGCATATCCGGTGGGTTACTTTCCTACAAAAGTTTCCTTTTGCGATCAAGCACAAGTCTGGAACACTTAACCGTGTTGCGGATGCGTTAAGTCGAAGAAGCCAACTATTGGTGACACTTTCTCAAGAGGTTATTGGGTTTGAATTTTTGAAAGAGCTTTACGAGGAAGATGAAGACTTCAAAGAAATTTGGGCCAAGTGTGTGAAGCAAGAACCCTGCAACGACTTCTTCATCAAAGAAGGGTATCTTTTTCAAGGAAATAGAATATGCATACCAAGGACTCTATATGCCTCTGCCAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

288

Amino Acids

33.46

Weight (kDa)

8.44

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 74 - 167 4.2e-29 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 99 - 198 1.2e-31 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 667
AccI GTMKAC 1 cut(s) 49
AciI CCGC 2 cut(s) 151, 638
AcsI RAATTY 4 cut(s) 163, 494, 701, 744
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 5 cut(s) 117, 260, 282, 424, 859
AfiI CCNNNNNNNGG 3 cut(s) 67, 637, 667
AflIII ACRYGT 1 cut(s) 52
AgeI ACCGGT 1 cut(s) 277
AgsI TTSAA 7 cut(s) 218, 463, 526, 701, 709, 739, 812
AluBI AGCT 6 cut(s) 13, 39, 287, 397, 407, 715
AluI AGCT 6 cut(s) 13, 39, 287, 397, 407, 715
AoxI GGCC 3 cut(s) 89, 456, 750
ApoI RAATTY 4 cut(s) 163, 494, 701, 744
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AsiGI ACCGGT 1 cut(s) 277
AspS9I GGNCC 2 cut(s) 456, 750
AsuHPI GGTGA 3 cut(s) 82, 236, 682
BbsI GAAGAC 1 cut(s) 738
BccI CCATC 1 cut(s) 522
BclI TGATCA 1 cut(s) 252
BfaI CTAG 2 cut(s) 284, 408
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 456, 750
BmsI GCATC 2 cut(s) 316, 631
BpiI GAAGAC 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 345, 666
BsaJI CCNNGG 1 cut(s) 833
BsaWI WCCGGW 2 cut(s) 277, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 637, 667
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 855
BseDI CCNNGG 1 cut(s) 833
BseGI GGATG 2 cut(s) 355, 646
BseLI CCNNNNNNNGG 3 cut(s) 67, 637, 667
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 855
BsgI GTGCAG 2 cut(s) 165, 506
BshFI GGCC 3 cut(s) 91, 458, 752
BshTI ACCGGT 1 cut(s) 277
BsiSI CCGG 2 cut(s) 278, 568
BsiWI CGTACG 1 cut(s) 115
BslI CCNNNNNNNGG 3 cut(s) 67, 637, 667
BsnI GGCC 3 cut(s) 91, 458, 752
Bsp143I GATC 2 cut(s) 252, 603
BspACI CCGC 2 cut(s) 151, 638
BspANI GGCC 3 cut(s) 91, 458, 752
BspCNI CTCAG 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 1 cut(s) 855
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 833
BssMI GATC 2 cut(s) 252, 603
BssNAI GTATAC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 833
Bst1107I GTATAC 1 cut(s) 50
Bst4CI ACNGT 4 cut(s) 106, 468, 539, 632
BstDEI CTNAG 1 cut(s) 40
BstF5I GGATG 2 cut(s) 355, 646
BstKTI GATC 2 cut(s) 255, 606
BstMBI GATC 2 cut(s) 252, 603
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 738
BstZ17I GTATAC 1 cut(s) 50
BsuRI GGCC 3 cut(s) 91, 458, 752
BtsCI GGATG 2 cut(s) 355, 646
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 4 cut(s) 175, 177, 381, 473
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 456, 750
Csp6I GTAC 5 cut(s) 116, 259, 281, 423, 858
CspAI ACCGGT 1 cut(s) 277
CviAII CATG 3 cut(s) 53, 128, 250
CviQI GTAC 5 cut(s) 116, 259, 281, 423, 858
DdeI CTNAG 1 cut(s) 40
DpnI GATC 2 cut(s) 254, 605
DpnII GATC 2 cut(s) 252, 603
Eco130I CCWWGG 1 cut(s) 833
Eco57I CTGAAG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 833
EcoT22I ATGCAT 2 cut(s) 564, 830
ErhI CCWWGG 1 cut(s) 833
FaeI CATG 3 cut(s) 56, 131, 253
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FatI CATG 3 cut(s) 52, 127, 249
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 2 cut(s) 362, 653
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 2 cut(s) 284, 408
GluI GCNGC 1 cut(s) 151
HaeIII GGCC 3 cut(s) 91, 458, 752
HapII CCGG 2 cut(s) 278, 568
Hin1II CATG 3 cut(s) 56, 131, 253
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 2 cut(s) 11, 395
HinfI GANTC 1 cut(s) 838
HpaII CCGG 2 cut(s) 278, 568
HphI GGTGA 3 cut(s) 82, 236, 682
Hpy166II GTNNAC 3 cut(s) 50, 58, 553
Hpy188I TCNGA 2 cut(s) 43, 201
Hpy188III TCNNGA 4 cut(s) 83, 362, 618, 683
Hpy8I GTNNAC 3 cut(s) 50, 58, 553
HpyAV CCTTC 3 cut(s) 38, 151, 791
HpyCH4III ACNGT 4 cut(s) 106, 468, 539, 632
HpyCH4IV ACGT 2 cut(s) 114, 380
HpyCH4V TGCA 6 cut(s) 182, 446, 487, 562, 777, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 40
HpySE526I ACGT 2 cut(s) 114, 380
Hsp92II CATG 3 cut(s) 56, 131, 253
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 2 cut(s) 252, 603
LpnPI CCDG 7 cut(s) 68, 218, 291, 306, 581, 603, 787
LweI GCATC 2 cut(s) 316, 631
MaeI CTAG 2 cut(s) 284, 408
MaeII ACGT 2 cut(s) 114, 380
MaeIII GTNAC 4 cut(s) 110, 376, 574, 670
MalI GATC 2 cut(s) 254, 605
MboI GATC 2 cut(s) 252, 603
MboII GAAGA 6 cut(s) 214, 239, 666, 737, 743, 778
MluCI AATT 5 cut(s) 78, 163, 494, 701, 744
MlyI GAGTC 1 cut(s) 832
MnlI CCTC 5 cut(s) 307, 483, 679, 715, 859
Mph1103I ATGCAT 2 cut(s) 564, 830
MseI TTAA 4 cut(s) 266, 399, 627, 647
MspI CCGG 2 cut(s) 278, 568
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 2 cut(s) 252, 603
NlaIII CATG 3 cut(s) 56, 131, 253
NmuCI GTSAC 3 cut(s) 110, 376, 670
NsiI ATGCAT 2 cut(s) 564, 830
NspI RCATGY 1 cut(s) 56
PciI ACATGT 1 cut(s) 52
Pfl23II CGTACG 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 667
PinAI ACCGGT 1 cut(s) 277
PkrI GCNGC 1 cut(s) 152
PleI GAGTC 1 cut(s) 832
PpsI GAGTC 1 cut(s) 832
PscI ACATGT 1 cut(s) 52
PspLI CGTACG 1 cut(s) 115
PspPI GGNCC 2 cut(s) 456, 750
RsaI GTAC 5 cut(s) 117, 260, 282, 424, 859
RsaNI GTAC 5 cut(s) 116, 259, 281, 423, 858
SaqAI TTAA 4 cut(s) 266, 399, 627, 647
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 2 cut(s) 252, 603
Sau96I GGNCC 2 cut(s) 456, 750
SchI GAGTC 1 cut(s) 832
SfaNI GCATC 2 cut(s) 316, 631
SmlI CTYRAG 2 cut(s) 360, 681
SmoI CTYRAG 2 cut(s) 360, 681
Sse9I AATT 5 cut(s) 78, 163, 494, 701, 744
SsiI CCGC 2 cut(s) 151, 638
SspMI CTAG 2 cut(s) 284, 408
StyI CCWWGG 1 cut(s) 833
TaaI ACNGT 4 cut(s) 106, 468, 539, 632
TaiI ACGT 2 cut(s) 117, 383
TaqI TCGA 1 cut(s) 652
TasI AATT 5 cut(s) 78, 163, 494, 701, 744
TatI WGTACW 2 cut(s) 258, 422
TauI GCSGC 1 cut(s) 153
Tru1I TTAA 4 cut(s) 266, 399, 627, 647
Tru9I TTAA 4 cut(s) 266, 399, 627, 647
TscAI CASTG 4 cut(s) 175, 184, 381, 473
TseFI GTSAC 3 cut(s) 110, 376, 670
Tsp45I GTSAC 3 cut(s) 110, 376, 670
TspDTI ATGAA 4 cut(s) 116, 417, 744, 778
TspRI CASTG 4 cut(s) 175, 184, 381, 473
Van91I CCANNNNNTGG 1 cut(s) 667
XapI RAATTY 4 cut(s) 163, 494, 701, 744
XceI RCATGY 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 49
XspI CTAG 2 cut(s) 284, 408
Zsp2I ATGCAT 2 cut(s) 564, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.