Rmu_co8037806.1_g000001

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8037806.1
OG0000291
Physical Location & Seq
Reverse (-)
2 .. 210
209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8037806.1_g000001.1.cds

Sequence Viewer

Length: 209 bp
atgttgatggtgaaagaagtgggcactgatgattttagttattccaaggtgttggcacctttgttggaggaatataatgaagtcattcctgaggagttaccttctgggctaccacctatgcgtgacatacaacaccatattgatctcgtaccaggttcaagtttgccaaacaggcctcactaccgcatgagtccacaagaatatgaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag gag-asp_proteas zf-CCHC

Protein Analysis

69

Amino Acids

7.94

Weight (kDa)

4.7

Isoelectric Point (pI)

66.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 1 cut(s) 184
AfaI GTAC 1 cut(s) 150
AgsI TTSAA 1 cut(s) 159
AjnI CCWGG 1 cut(s) 151
AoxI GGCC 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 22
AxyI CCTNAGG 1 cut(s) 90
BaeGI GKGCMC 1 cut(s) 26
BanI GGYRCC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 45
Bse21I CCTNAGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 26
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 55
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 90
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 52
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 24
CsiI ACCWGGT 1 cut(s) 151
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 187
CviJI RGCY 2 cut(s) 109, 175
CviKI_1 RGCY 2 cut(s) 109, 175
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 175
Eco81I CCTNAGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 190
FaiI YATR 6 cut(s) 75, 119, 128, 138, 188, 204
FatI CATG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 1 cut(s) 190
HinfI GANTC 1 cut(s) 190
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 5 cut(s) 90, 102, 138, 157, 165
MabI ACCWGGT 1 cut(s) 151
MaeIII GTNAC 2 cut(s) 96, 122
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 26
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 3 cut(s) 61, 85, 186
MroXI GAANNNNTTC 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 122
PceI AGGCCT 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 84
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 57
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 26
SetI ASST 5 cut(s) 51, 61, 103, 118, 157
SexAI ACCWGGT 1 cut(s) 151
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 1 cut(s) 184
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 45
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 93
TspRI CASTG 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.