transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ty3_capsid | PF19259 | 143 - 314 | 3.6e-08 | Ty3 transposon capsid-like protein |
| Retrotrans_gag | PF03732 | 183 - 278 | 1.4e-16 | Retrotransposon gag protein |
| gag-asp_proteas | PF13975 | 456 - 545 | 3.4e-12 | gag-polyprotein putative aspartyl protease |
| Asp_protease_2 | PF13650 | 456 - 544 | 6.3e-11 | Aspartyl protease |
| RVP_2 | PF08284 | 466 - 550 | 1.4e-11 | Retroviral aspartyl protease |
| RVT_1 | PF00078 | 698 - 857 | 2.5e-40 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 920 - 1014 | 9.1e-34 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 945 - 1044 | 1.1e-32 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 1136 - 1190 | 4.6e-21 | Integrase zinc binding domain |
| SH3_Tf2-1 | PF24626 | 1423 - 1486 | 1.2e-14 | Tf2-1-like, SH3 domain |
| Chromo | PF00385 | 1512 - 1564 | 8.6e-13 | Chromo (CHRromatin Organisation MOdifier) domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1610, 4570 |
| AatII | GACGTC | 1 cut(s) | 1614 |
| Acc16I | TGCGCA | 1 cut(s) | 2156 |
| Acc36I | ACCTGC | 1 cut(s) | 3563 |
| AccB1I | GGYRCC | 5 cut(s) | 70, 1972, 2207, 2306, 4578 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 874 |
| AccBSI | CCGCTC | 2 cut(s) | 1010, 4357 |
| AccI | GTMKAC | 4 cut(s) | 114, 2436, 4122, 4509 |
| AccII | CGCG | 9 cut(s) | 111, 136, 457, 1061, 2288, 2348, 2520, 2537, 4141 |
| AclWI | GGATC | 5 cut(s) | 807, 1260, 3284, 3297, 4540 |
| AcoI | YGGCCR | 2 cut(s) | 3369, 4084 |
| AcsI | RAATTY | 2 cut(s) | 1019, 3116 |
| AcuI | CTGAAG | 4 cut(s) | 836, 1287, 2813, 4676 |
| AcyI | GRCGYC | 3 cut(s) | 1611, 1973, 4579 |
| AfaI | GTAC | 4 cut(s) | 2165, 2393, 2957, 3807 |
| AflII | CTTAAG | 2 cut(s) | 647, 4723 |
| AflIII | ACRYGT | 2 cut(s) | 2458, 3784 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 863 |
| AjiI | CACGTC | 3 cut(s) | 3006, 4438, 4507 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3733, 3765 |
| AleI | CACNNNNGTG | 2 cut(s) | 98, 3728 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 791, 823 |
| Alw21I | GWGCWC | 8 cut(s) | 660, 720, 768, 2531, 2733, 3891, 4049, 4506 |
| Alw26I | GTCTC | 6 cut(s) | 626, 735, 2490, 3643, 3669, 4317 |
| AlwI | GGATC | 5 cut(s) | 807, 1260, 3284, 3297, 4540 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4597 |
| Ama87I | CYCGRG | 6 cut(s) | 195, 677, 1129, 1536, 2239, 3878 |
| ApeKI | GCWGC | 5 cut(s) | 890, 893, 2017, 2491, 4288 |
| ApoI | RAATTY | 2 cut(s) | 1019, 3116 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 902, 934, 3125, 3157 |
| AseI | ATTAAT | 1 cut(s) | 1380 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 755, 1836, 1944, 4664 |
| AsuC2I | CCSGG | 5 cut(s) | 509, 782, 987, 1950, 4295 |
| AsuII | TTCGAA | 2 cut(s) | 921, 3144 |
| AsuNHI | GCTAGC | 1 cut(s) | 2980 |
| AvaI | CYCGRG | 6 cut(s) | 195, 677, 1129, 1536, 2239, 3878 |
| AxyI | CCTNAGG | 1 cut(s) | 2881 |
| BaeGI | GKGCMC | 5 cut(s) | 75, 1196, 1669, 3162, 3851 |
| BalI | TGGCCA | 2 cut(s) | 3371, 4086 |
| BamHI | GGATCC | 1 cut(s) | 3289 |
| BanI | GGYRCC | 5 cut(s) | 70, 1972, 2207, 2306, 4578 |
| BanII | GRGCYC | 6 cut(s) | 660, 720, 2137, 2733, 3891, 4049 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3710, 3742 |
| BauI | CACGAG | 2 cut(s) | 2387, 3396 |
| Bbv12I | GWGCWC | 8 cut(s) | 660, 720, 768, 2531, 2733, 3891, 4049, 4506 |
| BbvI | GCAGC | 5 cut(s) | 877, 880, 2029, 2478, 4275 |
| BciVI | GTATCC | 1 cut(s) | 2237 |
| BcnI | CCSGG | 5 cut(s) | 509, 782, 987, 1950, 4295 |
| BcoDI | GTCTC | 6 cut(s) | 626, 735, 2490, 3643, 3669, 4317 |
| BfaI | CTAG | 9 cut(s) | 119, 1151, 1662, 2228, 2558, 2981, 3837, 4199, 4550 |
| BfmI | CTRYAG | 1 cut(s) | 412 |
| BfoI | RGCGCY | 3 cut(s) | 1976, 4582, 4716 |
| BfrI | CTTAAG | 2 cut(s) | 647, 4723 |
| BfuAI | ACCTGC | 1 cut(s) | 3563 |
| BfuI | GTATCC | 1 cut(s) | 2237 |
| BglII | AGATCT | 3 cut(s) | 2185, 2230, 2788 |
| BmcAI | AGTACT | 1 cut(s) | 2393 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 863 |
| BmeT110I | CYCGRG | 6 cut(s) | 195, 677, 1129, 1536, 2239, 3878 |
| BmgBI | CACGTC | 3 cut(s) | 3006, 4438, 4507 |
| BmtI | GCTAGC | 1 cut(s) | 2984 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1100 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2513, 2545, 2687, 2719, 3623, 3655 |
| BpmI | CTGGAG | 5 cut(s) | 266, 1739, 2779, 3573, 4303 |
| Bpu14I | TTCGAA | 2 cut(s) | 921, 3144 |
| BpuEI | CTTGAG | 9 cut(s) | 423, 494, 704, 2018, 2042, 2949, 3197, 4173, 4433 |
| BpuMI | CCSGG | 5 cut(s) | 509, 782, 987, 1950, 4295 |
| Bsa29I | ATCGAT | 1 cut(s) | 3611 |
| BsaBI | GATNNNNATC | 1 cut(s) | 89 |
| BsaHI | GRCGYC | 3 cut(s) | 1611, 1973, 4579 |
| BsaWI | WCCGGW | 1 cut(s) | 2815 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1619, 1649, 2104, 2134, 3369, 3399 |
| Bse118I | RCCGGY | 1 cut(s) | 3452 |
| Bse1I | ACTGG | 6 cut(s) | 1568, 1756, 2004, 2762, 4087, 4632 |
| Bse21I | CCTNAGG | 1 cut(s) | 2881 |
| Bse3DI | GCAATG | 3 cut(s) | 264, 693, 2259 |
| Bse8I | GATNNNNATC | 1 cut(s) | 89 |
| BseCI | ATCGAT | 1 cut(s) | 3611 |
| BseJI | GATNNNNATC | 1 cut(s) | 89 |
| BseMI | GCAATG | 3 cut(s) | 264, 693, 2259 |
| BseMII | CTCAG | 8 cut(s) | 680, 959, 1241, 2192, 2718, 2937, 3876, 4318 |
| BseNI | ACTGG | 6 cut(s) | 1568, 1756, 2004, 2762, 4087, 4632 |
| BseRI | GAGGAG | 3 cut(s) | 1050, 3476, 4556 |
| BseSI | GKGCMC | 5 cut(s) | 75, 1196, 1669, 3162, 3851 |
| BseXI | GCAGC | 5 cut(s) | 877, 880, 2029, 2478, 4275 |
| BseYI | CCCAGC | 2 cut(s) | 3078, 3155 |
| BsgI | GTGCAG | 1 cut(s) | 2347 |
| Bsh1236I | CGCG | 9 cut(s) | 111, 136, 457, 1061, 2288, 2348, 2520, 2537, 4141 |
| BshNI | GGYRCC | 5 cut(s) | 70, 1972, 2207, 2306, 4578 |
| BshVI | ATCGAT | 1 cut(s) | 3611 |
| BsiHKAI | GWGCWC | 8 cut(s) | 660, 720, 768, 2531, 2733, 3891, 4049, 4506 |
| BsiHKCI | CYCGRG | 6 cut(s) | 195, 677, 1129, 1536, 2239, 3878 |
| BsiSI | CCGG | 7 cut(s) | 508, 782, 987, 1949, 2816, 3453, 4295 |
| BslFI | GGGAC | 7 cut(s) | 1055, 1079, 1327, 2768, 3533, 3845, 4283 |
| BsmAI | GTCTC | 6 cut(s) | 626, 735, 2490, 3643, 3669, 4317 |
| BsmFI | GGGAC | 7 cut(s) | 1055, 1079, 1327, 2768, 3533, 3845, 4283 |
| BsmI | GAATGC | 2 cut(s) | 332, 3423 |
| BsoBI | CYCGRG | 6 cut(s) | 195, 677, 1129, 1536, 2239, 3878 |
| Bsp119I | TTCGAA | 2 cut(s) | 921, 3144 |
| Bsp19I | CCATGG | 3 cut(s) | 833, 3294, 3626 |
| BspCNI | CTCAG | 8 cut(s) | 679, 958, 1240, 2193, 2719, 2938, 3877, 4317 |
| BspDI | ATCGAT | 1 cut(s) | 3611 |
| BspFNI | CGCG | 9 cut(s) | 111, 136, 457, 1061, 2288, 2348, 2520, 2537, 4141 |
| BspHI | TCATGA | 1 cut(s) | 3423 |
| BspMI | ACCTGC | 1 cut(s) | 3563 |
| BspOI | GCTAGC | 1 cut(s) | 2984 |
| BspPI | GGATC | 5 cut(s) | 807, 1260, 3284, 3297, 4540 |
| BspQI | GCTCTTC | 2 cut(s) | 3326, 4037 |
| BspT104I | TTCGAA | 2 cut(s) | 921, 3144 |
| BspT107I | GGYRCC | 5 cut(s) | 70, 1972, 2207, 2306, 4578 |
| BspTI | CTTAAG | 2 cut(s) | 647, 4723 |
| BsrBI | CCGCTC | 2 cut(s) | 1010, 4357 |
| BsrDI | GCAATG | 3 cut(s) | 264, 693, 2259 |
| BsrFI | RCCGGY | 1 cut(s) | 3452 |
| BsrI | ACTGG | 6 cut(s) | 1568, 1756, 2004, 2762, 4087, 4632 |
| BssAI | RCCGGY | 1 cut(s) | 3452 |
| BssNAI | GTATAC | 1 cut(s) | 2437 |
| BssNI | GRCGYC | 3 cut(s) | 1611, 1973, 4579 |
| BssSI | CACGAG | 2 cut(s) | 2387, 3396 |
| BssT1I | CCWWGG | 5 cut(s) | 465, 833, 1899, 3294, 3626 |
| Bst1107I | GTATAC | 1 cut(s) | 2437 |
| Bst2BI | CACGAG | 2 cut(s) | 2387, 3396 |
| Bst4CI | ACNGT | 6 cut(s) | 292, 1054, 1698, 2152, 2996, 4111 |
| Bst6I | CTCTTC | 7 cut(s) | 525, 918, 937, 1263, 3326, 3779, 4037 |
| BstACI | GRCGYC | 3 cut(s) | 1611, 1973, 4579 |
| BstAFI | CTTAAG | 2 cut(s) | 647, 4723 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 890 |
| BstBI | TTCGAA | 2 cut(s) | 921, 3144 |
| BstDSI | CCRYGG | 3 cut(s) | 833, 3294, 3626 |
| BstEII | GGTNACC | 1 cut(s) | 3455 |
| BstENI | CCTNNNNNAGG | 5 cut(s) | 650, 1811, 2033, 3491, 3665 |
| BstFNI | CGCG | 9 cut(s) | 111, 136, 457, 1061, 2288, 2348, 2520, 2537, 4141 |
| BstH2I | RGCGCY | 3 cut(s) | 1976, 4582, 4716 |
| BstMAI | GTCTC | 6 cut(s) | 626, 735, 2490, 3643, 3669, 4317 |
| BstNSI | RCATGY | 3 cut(s) | 1158, 2462, 3788 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1100 |
| BstPI | GGTNACC | 1 cut(s) | 3455 |
| BstSFI | CTRYAG | 1 cut(s) | 412 |
| BstSLI | GKGCMC | 5 cut(s) | 75, 1196, 1669, 3162, 3851 |
| BstUI | CGCG | 9 cut(s) | 111, 136, 457, 1061, 2288, 2348, 2520, 2537, 4141 |
| BstV1I | GCAGC | 5 cut(s) | 877, 880, 2029, 2478, 4275 |
| BstX2I | RGATCY | 5 cut(s) | 2185, 2230, 2788, 3289, 4545 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2204 |
| BstYI | RGATCY | 5 cut(s) | 2185, 2230, 2788, 3289, 4545 |
| BstZ17I | GTATAC | 1 cut(s) | 2437 |
| Bsu15I | ATCGAT | 1 cut(s) | 3611 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2881 |
| BsuI | GTATCC | 1 cut(s) | 2237 |
| BsuTUI | ATCGAT | 1 cut(s) | 3611 |
| BtgI | CCRYGG | 3 cut(s) | 833, 3294, 3626 |
| BtgZI | GCGATG | 1 cut(s) | 401 |
| BtrI | CACGTC | 3 cut(s) | 3006, 4438, 4507 |
| BtsI | GCAGTG | 1 cut(s) | 519 |
| BtsIMutI | CAGTG | 6 cut(s) | 519, 1561, 2148, 2992, 3829, 4080 |
| BveI | ACCTGC | 1 cut(s) | 3563 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4597 |
| CciI | TCATGA | 1 cut(s) | 3423 |
| Cfr10I | RCCGGY | 1 cut(s) | 3452 |
| ClaI | ATCGAT | 1 cut(s) | 3611 |
| CpoI | CGGWCCG | 1 cut(s) | 989 |
| CseI | GACGC | 3 cut(s) | 100, 2281, 3566 |
| CsiI | ACCWGGT | 1 cut(s) | 1276 |
| Csp6I | GTAC | 4 cut(s) | 2164, 2392, 2956, 3806 |
| CspI | CGGWCCG | 1 cut(s) | 989 |
| CviQI | GTAC | 4 cut(s) | 2164, 2392, 2956, 3806 |
| DinI | GGCGCC | 2 cut(s) | 1974, 4580 |
| DraI | TTTAAA | 2 cut(s) | 3781, 4261 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1610, 4570 |
| DriI | GACNNNNNGTC | 1 cut(s) | 863 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1610, 4570 |
| EaeI | YGGCCR | 2 cut(s) | 3369, 4084 |
| Eam1104I | CTCTTC | 7 cut(s) | 525, 918, 937, 1263, 3326, 3779, 4037 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 863 |
| EarI | CTCTTC | 7 cut(s) | 525, 918, 937, 1263, 3326, 3779, 4037 |
| EciI | GGCGGA | 1 cut(s) | 2018 |
| Ecl136II | GAGCTC | 5 cut(s) | 658, 718, 2731, 3889, 4047 |
| Eco130I | CCWWGG | 5 cut(s) | 465, 833, 1899, 3294, 3626 |
| Eco147I | AGGCCT | 2 cut(s) | 1514, 2780 |
| Eco24I | GRGCYC | 6 cut(s) | 660, 720, 2137, 2733, 3891, 4049 |
| Eco32I | GATATC | 1 cut(s) | 91 |
| Eco53kI | GAGCTC | 5 cut(s) | 658, 718, 2731, 3889, 4047 |
| Eco57I | CTGAAG | 4 cut(s) | 836, 1287, 2813, 4676 |
| Eco81I | CCTNAGG | 1 cut(s) | 2881 |
| Eco88I | CYCGRG | 6 cut(s) | 195, 677, 1129, 1536, 2239, 3878 |
| Eco91I | GGTNACC | 1 cut(s) | 3455 |
| EcoICRI | GAGCTC | 5 cut(s) | 658, 718, 2731, 3889, 4047 |
| EcoNI | CCTNNNNNAGG | 5 cut(s) | 650, 1811, 2033, 3491, 3665 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1172, 2026 |
| EcoO65I | GGTNACC | 1 cut(s) | 3455 |
| EcoRV | GATATC | 1 cut(s) | 91 |
| EcoT14I | CCWWGG | 5 cut(s) | 465, 833, 1899, 3294, 3626 |
| EcoT22I | ATGCAT | 1 cut(s) | 334 |
| EcoT38I | GRGCYC | 6 cut(s) | 660, 720, 2137, 2733, 3891, 4049 |
| EgeI | GGCGCC | 2 cut(s) | 1974, 4580 |
| EheI | GGCGCC | 2 cut(s) | 1974, 4580 |
| ErhI | CCWWGG | 5 cut(s) | 465, 833, 1899, 3294, 3626 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 2516, 2548, 3533, 3565, 4052, 4084 |
| FaqI | GGGAC | 7 cut(s) | 1055, 1079, 1327, 2768, 3533, 3845, 4283 |
| FauI | CCCGC | 6 cut(s) | 58, 1717, 1745, 3510, 4204, 4414 |
| FblI | GTMKAC | 4 cut(s) | 114, 2436, 4122, 4509 |
| FriOI | GRGCYC | 6 cut(s) | 660, 720, 2137, 2733, 3891, 4049 |
| FspBI | CTAG | 9 cut(s) | 119, 1151, 1662, 2228, 2558, 2981, 3837, 4199, 4550 |
| FspI | TGCGCA | 1 cut(s) | 2156 |
| GsaI | CCCAGC | 2 cut(s) | 3082, 3159 |
| GsuI | CTGGAG | 5 cut(s) | 266, 1739, 2779, 3573, 4303 |
| HaeII | RGCGCY | 3 cut(s) | 1976, 4582, 4716 |
| HapII | CCGG | 7 cut(s) | 508, 782, 987, 1949, 2816, 3453, 4295 |
| HgaI | GACGC | 3 cut(s) | 100, 2281, 3566 |
| Hin1I | GRCGYC | 3 cut(s) | 1611, 1973, 4579 |
| HincII | GTYRAC | 8 cut(s) | 115, 906, 970, 1411, 2340, 3090, 3703, 4510 |
| HindII | GTYRAC | 8 cut(s) | 115, 906, 970, 1411, 2340, 3090, 3703, 4510 |
| HpaI | GTTAAC | 1 cut(s) | 3090 |
| HpaII | CCGG | 7 cut(s) | 508, 782, 987, 1949, 2816, 3453, 4295 |
| Hpy99I | CGWCG | 6 cut(s) | 116, 2688, 3342, 4511, 4706, 4709 |
| HpyCH4III | ACNGT | 6 cut(s) | 292, 1054, 1698, 2152, 2996, 4111 |
| HpyCH4IV | ACGT | 9 cut(s) | 1076, 1611, 2565, 2653, 2686, 3005, 3265, 4437, 4506 |
| HpySE526I | ACGT | 9 cut(s) | 1076, 1611, 2565, 2653, 2686, 3005, 3265, 4437, 4506 |
| Hsp92I | GRCGYC | 3 cut(s) | 1611, 1973, 4579 |
| KasI | GGCGCC | 2 cut(s) | 1972, 4578 |
| KspAI | GTTAAC | 1 cut(s) | 3090 |
| LguI | GCTCTTC | 2 cut(s) | 3326, 4037 |
| Lsp1109I | GCAGC | 5 cut(s) | 877, 880, 2029, 2478, 4275 |
| MabI | ACCWGGT | 1 cut(s) | 1276 |
| MaeI | CTAG | 9 cut(s) | 119, 1151, 1662, 2228, 2558, 2981, 3837, 4199, 4550 |
| MaeII | ACGT | 9 cut(s) | 1076, 1611, 2565, 2653, 2686, 3005, 3265, 4437, 4506 |
| MbiI | CCGCTC | 2 cut(s) | 1010, 4357 |
| MfeI | CAATTG | 2 cut(s) | 1235, 4004 |
| MflI | RGATCY | 5 cut(s) | 2185, 2230, 2788, 3289, 4545 |
| MlsI | TGGCCA | 2 cut(s) | 3371, 4086 |
| MluNI | TGGCCA | 2 cut(s) | 3371, 4086 |
| Mly113I | GGCGCC | 2 cut(s) | 1973, 4579 |
| MlyI | GAGTC | 5 cut(s) | 518, 937, 1022, 3580, 4428 |
| MmeI | TCCRAC | 6 cut(s) | 84, 1050, 1452, 2090, 2509, 3933 |
| Mox20I | TGGCCA | 2 cut(s) | 3371, 4086 |
| Mph1103I | ATGCAT | 1 cut(s) | 334 |
| MroXI | GAANNNNTTC | 4 cut(s) | 755, 1836, 1944, 4664 |
| MscI | TGGCCA | 2 cut(s) | 3371, 4086 |
| MslI | CAYNNNNRTG | 6 cut(s) | 98, 2369, 3314, 3365, 3692, 3728 |
| Msp20I | TGGCCA | 2 cut(s) | 3371, 4086 |
| MspCI | CTTAAG | 2 cut(s) | 647, 4723 |
| MspI | CCGG | 7 cut(s) | 508, 782, 987, 1949, 2816, 3453, 4295 |
| MunI | CAATTG | 2 cut(s) | 1235, 4004 |
| Mva1269I | GAATGC | 2 cut(s) | 332, 3423 |
| MvnI | CGCG | 9 cut(s) | 111, 136, 457, 1061, 2288, 2348, 2520, 2537, 4141 |
| NarI | GGCGCC | 2 cut(s) | 1973, 4579 |
| NciI | CCSGG | 5 cut(s) | 509, 782, 987, 1950, 4295 |
| NcoI | CCATGG | 3 cut(s) | 833, 3294, 3626 |
| NheI | GCTAGC | 1 cut(s) | 2980 |
| NmeAIII | GCCGAG | 1 cut(s) | 4204 |
| NsbI | TGCGCA | 1 cut(s) | 2156 |
| NsiI | ATGCAT | 1 cut(s) | 334 |
| NspI | RCATGY | 3 cut(s) | 1158, 2462, 3788 |
| NspV | TTCGAA | 2 cut(s) | 921, 3144 |
| OliI | CACNNNNGTG | 2 cut(s) | 98, 3728 |
| PaeI | GCATGC | 1 cut(s) | 1158 |
| PaeR7I | CTCGAG | 2 cut(s) | 195, 1536 |
| PagI | TCATGA | 1 cut(s) | 3423 |
| PasI | CCCWGGG | 1 cut(s) | 4251 |
| PceI | AGGCCT | 2 cut(s) | 1514, 2780 |
| PciI | ACATGT | 2 cut(s) | 2458, 3784 |
| PciSI | GCTCTTC | 2 cut(s) | 3326, 4037 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 1058, 1608, 4704, 4713 |
| PctI | GAATGC | 2 cut(s) | 332, 3423 |
| PdmI | GAANNNNTTC | 4 cut(s) | 755, 1836, 1944, 4664 |
| PflFI | GACNNNGTC | 3 cut(s) | 110, 3524, 4274 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 874 |
| PfoI | TCCNGGA | 2 cut(s) | 780, 4293 |
| PleI | GAGTC | 5 cut(s) | 518, 937, 1021, 3580, 4427 |
| PluTI | GGCGCC | 2 cut(s) | 1976, 4582 |
| PpsI | GAGTC | 5 cut(s) | 518, 937, 1021, 3580, 4427 |
| PpuMI | RGGWCCY | 2 cut(s) | 1172, 2026 |
| PscI | ACATGT | 2 cut(s) | 2458, 3784 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1100 |
| PshBI | ATTAAT | 1 cut(s) | 1380 |
| Psp124BI | GAGCTC | 5 cut(s) | 660, 720, 2733, 3891, 4049 |
| Psp5II | RGGWCCY | 2 cut(s) | 1172, 2026 |
| PspEI | GGTNACC | 1 cut(s) | 3455 |
| PspFI | CCCAGC | 2 cut(s) | 3078, 3155 |
| PspPPI | RGGWCCY | 2 cut(s) | 1172, 2026 |
| PspXI | VCTCGAGB | 1 cut(s) | 195 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4597 |
| PsuI | RGATCY | 5 cut(s) | 2185, 2230, 2788, 3289, 4545 |
| PsyI | GACNNNGTC | 3 cut(s) | 110, 3524, 4274 |
| RsaI | GTAC | 4 cut(s) | 2165, 2393, 2957, 3807 |
| RsaNI | GTAC | 4 cut(s) | 2164, 2392, 2956, 3806 |
| RseI | CAYNNNNRTG | 6 cut(s) | 98, 2369, 3314, 3365, 3692, 3728 |
| Rsr2I | CGGWCCG | 1 cut(s) | 989 |
| RsrII | CGGWCCG | 1 cut(s) | 989 |
| SacI | GAGCTC | 5 cut(s) | 660, 720, 2733, 3891, 4049 |
| SalI | GTCGAC | 2 cut(s) | 113, 4508 |
| SapI | GCTCTTC | 2 cut(s) | 3326, 4037 |
| ScaI | AGTACT | 1 cut(s) | 2393 |
| SchI | GAGTC | 5 cut(s) | 518, 937, 1022, 3580, 4428 |
| SexAI | ACCWGGT | 1 cut(s) | 1276 |
| SfcI | CTRYAG | 1 cut(s) | 412 |
| SfoI | GGCGCC | 2 cut(s) | 1974, 4580 |
| Sfr274I | CTCGAG | 2 cut(s) | 195, 1536 |
| SfuI | TTCGAA | 2 cut(s) | 921, 3144 |
| SlaI | CTCGAG | 2 cut(s) | 195, 1536 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 98, 2369, 3314, 3365, 3692, 3728 |
| SphI | GCATGC | 1 cut(s) | 1158 |
| SseBI | AGGCCT | 2 cut(s) | 1514, 2780 |
| SspDI | GGCGCC | 2 cut(s) | 1972, 4578 |
| SspMI | CTAG | 9 cut(s) | 119, 1151, 1662, 2228, 2558, 2981, 3837, 4199, 4550 |
| SstI | GAGCTC | 5 cut(s) | 660, 720, 2733, 3891, 4049 |
| StuI | AGGCCT | 2 cut(s) | 1514, 2780 |
| StyI | CCWWGG | 5 cut(s) | 465, 833, 1899, 3294, 3626 |
| TaaI | ACNGT | 6 cut(s) | 292, 1054, 1698, 2152, 2996, 4111 |
| TaiI | ACGT | 9 cut(s) | 1079, 1614, 2568, 2656, 2689, 3008, 3268, 4440, 4509 |
| TaqII | GACCGA | 4 cut(s) | 180, 1006, 1592, 3875 |
| TatI | WGTACW | 2 cut(s) | 2391, 2955 |
| TauI | GCSGC | 6 cut(s) | 134, 952, 1491, 4211, 4245, 4333 |
| TscAI | CASTG | 6 cut(s) | 519, 1568, 2155, 2999, 3829, 4087 |
| TseI | GCWGC | 5 cut(s) | 890, 893, 2017, 2491, 4288 |
| TspGWI | ACGGA | 4 cut(s) | 371, 422, 923, 3420 |
| TspRI | CASTG | 6 cut(s) | 519, 1568, 2155, 2999, 3829, 4087 |
| Tth111I | GACNNNGTC | 3 cut(s) | 110, 3524, 4274 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 874 |
| Vha464I | CTTAAG | 2 cut(s) | 647, 4723 |
| VspI | ATTAAT | 1 cut(s) | 1380 |
| XagI | CCTNNNNNAGG | 5 cut(s) | 650, 1811, 2033, 3491, 3665 |
| XapI | RAATTY | 2 cut(s) | 1019, 3116 |
| XceI | RCATGY | 3 cut(s) | 1158, 2462, 3788 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 385, 1402 |
| XhoI | CTCGAG | 2 cut(s) | 195, 1536 |
| XmiI | GTMKAC | 4 cut(s) | 114, 2436, 4122, 4509 |
| XmnI | GAANNNNTTC | 4 cut(s) | 755, 1836, 1944, 4664 |
| XspI | CTAG | 9 cut(s) | 119, 1151, 1662, 2228, 2558, 2981, 3837, 4199, 4550 |
| ZraI | GACGTC | 1 cut(s) | 1612 |
| ZrmI | AGTACT | 1 cut(s) | 2393 |
| Zsp2I | ATGCAT | 1 cut(s) | 334 |