Rroxscaffold_3G00239420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000291
Physical Location & Seq
Reverse (-)
29706839 .. 29710568
3730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239420.1

Sequence Viewer

Length: 213 bp
ATGGCGGTGACAAGGGTGGTGGCCGAAGAATCGAGATCTCCAGCTAGTTCCGGAGATGGCGAGAGGGAAAAACTGCAGAAGAAGGTCGGGGAGAGAGAGTATGTTGACTTTCCAAAAGTGGAAGATCTCTTGGTGATTAACCAATATCATTCTTTGTTTTCATATCGTCAAGACGATCAAGAAGCAAGGAAGCTAGCTGCAGATAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.96

Weight (kDa)

5.07

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 21
AluBI AGCT 4 cut(s) 44, 193, 197, 207
AluI AGCT 4 cut(s) 44, 193, 197, 207
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 19, 145
AsuNHI GCTAGC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 50
BfaI CTAG 2 cut(s) 45, 194
BfmI CTRYAG 2 cut(s) 74, 198
BglII AGATCT 2 cut(s) 35, 124
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmtI GCTAGC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
BseAI TCCGGA 1 cut(s) 50
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 51
BsnI GGCC 1 cut(s) 23
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 3 cut(s) 35, 124, 175
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 23
BspEI TCCGGA 1 cut(s) 50
BspMAI CTGCAG 2 cut(s) 78, 202
BspOI GCTAGC 1 cut(s) 197
BssMI GATC 3 cut(s) 35, 124, 175
BstC8I GCNNGC 1 cut(s) 195
BstKTI GATC 3 cut(s) 38, 127, 178
BstMBI GATC 3 cut(s) 35, 124, 175
BstSFI CTRYAG 2 cut(s) 74, 198
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 35, 124
BstYI RGATCY 2 cut(s) 35, 124
BsuRI GGCC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 195
CspCI CAANNNNNGTGG 1 cut(s) 35
CviJI RGCY 5 cut(s) 23, 44, 193, 197, 207
CviKI_1 RGCY 5 cut(s) 23, 44, 193, 197, 207
DpnI GATC 3 cut(s) 37, 126, 177
DpnII GATC 3 cut(s) 35, 124, 175
EaeI YGGCCR 1 cut(s) 21
FaiI YATR 2 cut(s) 102, 163
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 45, 194
GluI GCNGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 51
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 51
HphI GGTGA 2 cut(s) 19, 145
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 4 cut(s) 33, 51, 170, 179
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 76, 200
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 3 cut(s) 35, 124, 175
LpnPI CCDG 2 cut(s) 54, 64
Lsp1109I GCAGC 1 cut(s) 184
MaeI CTAG 2 cut(s) 45, 194
MaeIII GTNAC 1 cut(s) 7
MalI GATC 3 cut(s) 37, 126, 177
MboI GATC 3 cut(s) 35, 124, 175
MboII GAAGA 3 cut(s) 38, 91, 134
MflI RGATCY 2 cut(s) 35, 124
MnlI CCTC 1 cut(s) 57
MroI TCCGGA 1 cut(s) 50
MseI TTAA 2 cut(s) 138, 211
MspI CCGG 1 cut(s) 51
NdeII GATC 3 cut(s) 35, 124, 175
NheI GCTAGC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 199
PstI CTGCAG 2 cut(s) 78, 202
PsuI RGATCY 2 cut(s) 35, 124
SaqAI TTAA 2 cut(s) 138, 211
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 3 cut(s) 35, 124, 175
SetI ASST 5 cut(s) 46, 87, 195, 199, 209
SfcI CTRYAG 2 cut(s) 74, 198
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 45, 194
TaqI TCGA 1 cut(s) 32
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 138, 211
Tru9I TTAA 2 cut(s) 138, 211
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 150
XspI CTAG 2 cut(s) 45, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.