FvH4_3g27861
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000291
Physical Location & Seq
Reverse (-)
20897215 .. 20899875
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27861.t1

Sequence Viewer

Length: 1938 bp
ATGATGTACCTAGATTGTGTTCAAGGGGTGAAGACTGTAACAGAGTATACCGTTGAGTTTGTGCGTCTTTCTGAACGTAATAACTTAGGCGAATCTGAAGGGCAGAAGGTTTCTCGGTACATCAGTGGGTTGAGACCTTCCATACAAGAGAAGATTGGCTTGCAAACTATGTGGTCTGTGACTGAGGCTGCAAGTTTAGCGATAAAGGCGGAGCTGATGGAGAAGTCCCCTAGGGTTTCTTTTCAGTTCCCAAGATTCACTAGTCAGAGGAGTATTGAAGTCGGGAGTTCTATGGGAGATAAAGGGAAAACGGTGTCGCAGAATACGGGTGGAATGACCACCAGGGCATCTAGTGCTGTTAACAAAGAGGGTGGCGTTTCTGGAACTTGTTATAAGTGTTTACAGCCTGGTCATAGATCCAACGAGTGTACTGCACCTCCGAAGGTGGTTAAAACAGTTCAGGCTTTAGTCGAGGCCTGTGAGGAAGACGAGACGGAGGAAGGAGGCGATGACTATGAAGGGGCTGAATTTGCAGTGGAAGATTCTCCAGAAAAGGTGAACATTGTATTGCAGAGAATTCTGTTGTCTCCCAGGGAGGAGGACGGTCAACGTAGGAACCTTTTCAGATCGCATTGCTCTGTCAACAACAATATGTGTAATCTGATTGTGGATAATGGGAGTTGCGAAAACTTTGTTGCTAAAAAGTTGGTGGAGTATTTGAAGTTACCAACAGAGGCCCATGTGATGCCCTATTCTTTGGGTTGGGTGAAGAAGGGTCCTCAAGTGCGTGTAACCAGAACCTGCAAAGTGCCTGTTTCGATTGGTAAGCATTATAGGGATGAAGTAGTTTGTGATGTTCTGGACATGGATGCTTGTCATATTCTGTTTGGGCATCCTTGGCAGTATGATGTTGATATTACTTACAGGGGTCGGGATAATGTGATGTTGTTTATGTGGGGTGAGTTTAAGATTGCTATGGCTCCTGTTGTGAACTTTGACAAACCTGCAGAAAAGAAGAGGGAGAACTTTCTAATCTTGTCCAAGAATGAGCGGGAGATAGAGGAAGACTTTAAGGAGTCAGAGTTGTGTTGTCCTGTGGTGATTAAGGGGTTGTTTAGTGCAGAGAAAGAACCTGTAGAGATCCCTGAAGAGGTACAACAGTTGTTTAAGGGAGTTGAGGAGTTGATTTCTGATGAGCTACCTAATGAGTTACCACCCATGCGAGACATCCAACACCAGATTGATTTTATTCCAGGTGCCAGTTTACCAAATCTTCCCCATTACCGTATGAGTCCTAAAGAGAATGAGATCTTGAGGGAGCAGATTGAGGACTTGCTGAAGAAGGGGTTTATTCGTGAGAGCATGAGCCCTTGTGCAGTTCCAGTCCTTCTTGTTCCTAAGAAGGGCAACCAATGGCGGATGTCTGTGGACAGTAGAGCCATCAACAAAATAACCATCAAGTATCGGTTTCCTATTCCTCGTTTGGAAGATATGCTTAATGAGTTGGCAGGAGAGGATGGAATTCAGGTGGATGAGGAGAAGATTCATGAAATACGAGACTGGCCAGCCCCAAAGACAGTTTCTGTGTGCGATGCTAGTGGAGTGGGGGTTGGTGCTGTGTTGTCCAAAGAGAAGAGGCCAGTAGCTTTCTTCAATGAAAAGCTTAGCGAAGCTCACCAGAAGTGGAGTACTTACGACCAGGAGTTCTATGCGGTCTTCCAGGCGTTAAAACAGTGGGAACGTTACCTTGTTCAGAGGGAATTTTTCTTGTATACAGACCATCAAGCCTTGAAGTTCCTTAACAGTCAGAAAAATAACAGGGTGGCAGACGCTTTGAGTAGGAGAGCATCCTTGATGGTGACGTTGTCACAGGAGATAGTGGGTTTCGACGTGCTCAATAATCTGTATGAAGAGGATGTTGACTTCAAGGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

646

Amino Acids

73.41

Weight (kDa)

5.31

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH PF17917 529 - 606 5e-23 RNase H-like domain found in reverse transcriptase
RT_RNaseH_2 PF17919 529 - 588 3e-14 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
Acc36I ACCTGC 2 cut(s) 809, 1012
AccB1I GGYRCC 1 cut(s) 1256
AccBSI CCGCTC 1 cut(s) 1051
AccI GTMKAC 2 cut(s) 47, 1772
AciI CCGC 4 cut(s) 209, 1051, 1417, 1712
AclI AACGTT 1 cut(s) 1741
AclWI GGATC 2 cut(s) 411, 1135
AcoI YGGCCR 1 cut(s) 1562
AcsI RAATTY 4 cut(s) 527, 576, 1521, 1760
AcuI CTGAAG 3 cut(s) 117, 1167, 1358
AfaI GTAC 5 cut(s) 8, 119, 430, 1155, 1690
AfiI CCNNNNNNNGG 2 cut(s) 1150, 1403
AgsI TTSAA 6 cut(s) 23, 278, 721, 1654, 1792, 1927
AhlI ACTAGT 1 cut(s) 260
AjiI CACGTC 1 cut(s) 1891
AjnI CCWGG 6 cut(s) 341, 406, 590, 1252, 1698, 1719
AjuI GAANNNNNNNTTGG 2 cut(s) 1564, 1596
AluBI AGCT 5 cut(s) 214, 1198, 1646, 1663, 1673
AluI AGCT 5 cut(s) 214, 1198, 1646, 1663, 1673
Alw21I GWGCWC 1 cut(s) 1896
Alw26I GTCTC 5 cut(s) 127, 485, 591, 1218, 1551
AlwI GGATC 2 cut(s) 411, 1135
AlwNI CAGNNNCTG 2 cut(s) 801, 1583
AoxI GGCC 4 cut(s) 474, 735, 1562, 1637
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 4 cut(s) 527, 576, 1521, 1760
Asp700I GAANNNNTTC 1 cut(s) 620
AspA2I CCTAGG 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 736, 776
AsuHPI GGTGA 7 cut(s) 40, 568, 778, 971, 1111, 1667, 1870
AvaII GGWCC 1 cut(s) 776
AvrII CCTAGG 1 cut(s) 230
BaeI ACNNNNGTAYC 4 cut(s) 109, 142, 1145, 1178
BalI TGGCCA 1 cut(s) 1564
BanI GGYRCC 1 cut(s) 1256
BanII GRGCYC 1 cut(s) 1370
BbsI GAAGAC 4 cut(s) 38, 492, 1071, 1708
Bbv12I GWGCWC 1 cut(s) 1896
BbvI GCAGC 1 cut(s) 175
BccI CCATC 6 cut(s) 211, 1448, 1463, 1511, 1788, 1849
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 6 cut(s) 343, 408, 592, 1254, 1700, 1721
BcoDI GTCTC 5 cut(s) 127, 485, 591, 1218, 1551
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 5 cut(s) 11, 231, 261, 351, 1596
BfmI CTRYAG 2 cut(s) 1005, 1134
BfuAI ACCTGC 2 cut(s) 809, 1012
BglII AGATCT 1 cut(s) 1308
BisI GCNGC 1 cut(s) 189
BlnI CCTAGG 1 cut(s) 230
BlpI GCTNAGC 1 cut(s) 1664
BlsI GCNGC 1 cut(s) 190
BmcAI AGTACT 1 cut(s) 1690
Bme1390I CCNGG 6 cut(s) 343, 408, 592, 1254, 1700, 1721
Bme18I GGWCC 1 cut(s) 776
BmgBI CACGTC 1 cut(s) 1891
BmgT120I GGNCC 2 cut(s) 736, 776
BmiI GGNNCC 4 cut(s) 617, 777, 981, 1258
BmrFI CCNGG 6 cut(s) 343, 408, 592, 1254, 1700, 1721
BmsI GCATC 6 cut(s) 356, 735, 859, 901, 1582, 1856
BpiI GAAGAC 4 cut(s) 38, 492, 1071, 1708
BpmI CTGGAG 1 cut(s) 531
Bpu1102I GCTNAGC 1 cut(s) 1664
BpuEI CTTGAG 2 cut(s) 765, 1333
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 5 cut(s) 230, 342, 590, 591, 896
BsaXI ACNNNNNCTCC 6 cut(s) 421, 451, 1067, 1097, 1593, 1623
Bsc4I CCNNNNNNNGG 2 cut(s) 1150, 1403
Bse1I ACTGG 4 cut(s) 1260, 1382, 1565, 1640
Bse3DI GCAATG 1 cut(s) 631
BseBI CCWGG 6 cut(s) 343, 408, 592, 1254, 1700, 1721
BseDI CCNNGG 5 cut(s) 230, 342, 590, 591, 896
BseGI GGATG 9 cut(s) 844, 874, 892, 1227, 1425, 1522, 1537, 1847, 1921
BseLI CCNNNNNNNGG 2 cut(s) 1150, 1403
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 4 cut(s) 1260, 1382, 1565, 1640
BseRI GAGGAG 4 cut(s) 283, 611, 1193, 1550
BseXI GCAGC 1 cut(s) 175
BsgI GTGCAG 3 cut(s) 417, 1140, 1395
BshFI GGCC 4 cut(s) 476, 737, 1564, 1639
BshNI GGYRCC 1 cut(s) 1256
BsiHKAI GWGCWC 1 cut(s) 1896
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 1150, 1403
BsmAI GTCTC 5 cut(s) 127, 485, 591, 1218, 1551
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 4 cut(s) 476, 737, 1564, 1639
Bso31I GGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 1370, 1896
Bsp143I GATC 4 cut(s) 416, 626, 1140, 1308
Bsp1720I GCTNAGC 1 cut(s) 1664
BspACI CCGC 4 cut(s) 209, 1051, 1417, 1712
BspANI GGCC 4 cut(s) 476, 737, 1564, 1639
BspCNI CTCAG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 1546
BspLI GGNNCC 4 cut(s) 617, 777, 981, 1258
BspMAI CTGCAG 1 cut(s) 1009
BspMI ACCTGC 2 cut(s) 809, 1012
BspPI GGATC 2 cut(s) 411, 1135
BspT107I GGYRCC 1 cut(s) 1256
BspTNI GGTCTC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 1051
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 4 cut(s) 1260, 1382, 1565, 1640
BssECI CCNNGG 5 cut(s) 230, 342, 590, 591, 896
BssMI GATC 4 cut(s) 416, 626, 1140, 1308
BssNAI GTATAC 2 cut(s) 48, 1773
BssT1I CCWWGG 2 cut(s) 230, 896
Bst1107I GTATAC 2 cut(s) 48, 1773
Bst2UI CCWGG 6 cut(s) 343, 408, 592, 1254, 1700, 1721
Bst6I CTCTTC 4 cut(s) 1010, 1143, 1628, 1905
BstAPI GCANNNNNTGC 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 161, 1566
BstDEI CTNAG 4 cut(s) 85, 183, 1398, 1664
BstF5I GGATG 9 cut(s) 844, 874, 892, 1227, 1425, 1522, 1537, 1847, 1921
BstKTI GATC 4 cut(s) 419, 629, 1143, 1311
BstMAI GTCTC 5 cut(s) 127, 485, 591, 1218, 1551
BstMBI GATC 4 cut(s) 416, 626, 1140, 1308
BstMWI GCNNNNNNNGC 5 cut(s) 197, 206, 353, 530, 898
BstNI CCWGG 6 cut(s) 343, 408, 592, 1254, 1700, 1721
BstSCI CCNGG 6 cut(s) 341, 406, 590, 1252, 1698, 1719
BstSFI CTRYAG 2 cut(s) 1005, 1134
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 4 cut(s) 38, 492, 1071, 1708
BstX2I RGATCY 3 cut(s) 416, 1140, 1308
BstYI RGATCY 3 cut(s) 416, 1140, 1308
BstZ17I GTATAC 2 cut(s) 48, 1773
BsuRI GGCC 4 cut(s) 476, 737, 1564, 1639
BtgZI GCGATG 2 cut(s) 522, 1605
BtrI CACGTC 1 cut(s) 1891
BtsCI GGATG 9 cut(s) 844, 874, 892, 1227, 1425, 1522, 1537, 1847, 1921
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 3 cut(s) 130, 540, 1739
BveI ACCTGC 2 cut(s) 809, 1012
Cac8I GCNNGC 2 cut(s) 161, 1566
CaiI CAGNNNCTG 2 cut(s) 801, 1583
CciI TCATGA 1 cut(s) 1546
Cfr13I GGNCC 2 cut(s) 736, 776
CseI GACGC 2 cut(s) 53, 1838
Csp6I GTAC 5 cut(s) 7, 118, 429, 1154, 1689
CspCI CAANNNNNGTGG 4 cut(s) 152, 187, 352, 387
CviAII CATG 5 cut(s) 740, 865, 1219, 1363, 1547
CviQI GTAC 5 cut(s) 7, 118, 429, 1154, 1689
DdeI CTNAG 4 cut(s) 85, 183, 1398, 1664
DpnI GATC 4 cut(s) 418, 628, 1142, 1310
DpnII GATC 4 cut(s) 416, 626, 1140, 1308
EaeI YGGCCR 1 cut(s) 1562
Eam1104I CTCTTC 4 cut(s) 1010, 1143, 1628, 1905
EarI CTCTTC 4 cut(s) 1010, 1143, 1628, 1905
EciI GGCGGA 2 cut(s) 224, 1432
Eco130I CCWWGG 2 cut(s) 230, 896
Eco147I AGGCCT 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 1370
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 776
Eco57I CTGAAG 3 cut(s) 117, 1167, 1358
EcoO109I RGGNCCY 1 cut(s) 776
EcoRI GAATTC 2 cut(s) 576, 1521
EcoRII CCWGG 6 cut(s) 341, 406, 590, 1252, 1698, 1719
EcoT14I CCWWGG 2 cut(s) 230, 896
EcoT38I GRGCYC 1 cut(s) 1370
ErhI CCWWGG 2 cut(s) 230, 896
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 5 cut(s) 743, 868, 1222, 1366, 1550
FalI AAGNNNNNCTT 4 cut(s) 143, 175, 1479, 1511
FaqI GGGAC 1 cut(s) 211
FatI CATG 5 cut(s) 739, 864, 1218, 1362, 1546
FauI CCCGC 1 cut(s) 1044
FblI GTMKAC 2 cut(s) 47, 1772
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 9 cut(s) 851, 879, 881, 1214, 1432, 1529, 1544, 1834, 1928
FriOI GRGCYC 1 cut(s) 1370
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 5 cut(s) 11, 231, 261, 351, 1596
GluI GCNGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 4 cut(s) 476, 737, 1564, 1639
HgaI GACGC 2 cut(s) 53, 1838
Hin1II CATG 5 cut(s) 743, 868, 1222, 1366, 1550
HincII GTYRAC 4 cut(s) 361, 608, 643, 1921
HindII GTYRAC 4 cut(s) 361, 608, 643, 1921
HindIII AAGCTT 1 cut(s) 1661
HinfI GANTC 6 cut(s) 92, 255, 542, 1076, 1291, 1543
HpaI GTTAAC 1 cut(s) 361
HphI GGTGA 7 cut(s) 40, 568, 778, 971, 1111, 1667, 1870
Hpy188III TCNNGA 8 cut(s) 283, 381, 548, 860, 932, 1312, 1355, 1547
Hpy99I CGWCG 1 cut(s) 1892
HpyCH4IV ACGT 5 cut(s) 76, 610, 1741, 1862, 1890
HpyCH4V TGCA 9 cut(s) 163, 191, 434, 533, 571, 804, 1007, 1121, 1376
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 206, 353, 530, 898
HpyF3I CTNAG 4 cut(s) 85, 183, 1398, 1664
HpySE526I ACGT 5 cut(s) 76, 610, 1741, 1862, 1890
Hsp92II CATG 5 cut(s) 743, 868, 1222, 1366, 1550
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 4 cut(s) 416, 626, 1140, 1308
LmnI GCTCC 3 cut(s) 211, 985, 1318
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 6 cut(s) 356, 735, 859, 901, 1582, 1856
MaeI CTAG 5 cut(s) 11, 231, 261, 351, 1596
MaeII ACGT 5 cut(s) 76, 610, 1741, 1862, 1890
MaeIII GTNAC 8 cut(s) 37, 178, 723, 790, 1209, 1742, 1858, 1866
MalI GATC 4 cut(s) 418, 628, 1142, 1310
MbiI CCGCTC 1 cut(s) 1051
MboI GATC 4 cut(s) 416, 626, 1140, 1308
MflI RGATCY 3 cut(s) 416, 1140, 1308
MhlI GDGCHC 2 cut(s) 1370, 1896
MlsI TGGCCA 1 cut(s) 1564
MluCI AATT 4 cut(s) 527, 576, 1521, 1760
MluNI TGGCCA 1 cut(s) 1564
MlyI GAGTC 2 cut(s) 1085, 1300
MmeI TCCRAC 2 cut(s) 444, 1255
Mox20I TGGCCA 1 cut(s) 1564
MroXI GAANNNNTTC 1 cut(s) 620
MscI TGGCCA 1 cut(s) 1564
MseI TTAA 9 cut(s) 360, 450, 966, 1071, 1104, 1167, 1497, 1727, 1800
Msp20I TGGCCA 1 cut(s) 1564
MspR9I CCNGG 6 cut(s) 343, 408, 592, 1254, 1700, 1721
MvaI CCWGG 6 cut(s) 343, 408, 592, 1254, 1700, 1721
MwoI GCNNNNNNNGC 5 cut(s) 197, 206, 353, 530, 898
NdeII GATC 4 cut(s) 416, 626, 1140, 1308
NlaIII CATG 5 cut(s) 743, 868, 1222, 1366, 1550
NlaIV GGNNCC 4 cut(s) 617, 777, 981, 1258
NmuCI GTSAC 3 cut(s) 178, 1858, 1866
PagI TCATGA 1 cut(s) 1546
PasI CCCWGGG 1 cut(s) 591
PceI AGGCCT 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 620
PfeI GAWTC 4 cut(s) 92, 255, 542, 1543
PflFI GACNNNGTC 1 cut(s) 1864
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 2 cut(s) 1084, 1299
PpsI GAGTC 2 cut(s) 1084, 1299
PpuMI RGGWCCY 1 cut(s) 776
PsiI TTATAA 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 1741
Psp5II RGGWCCY 1 cut(s) 776
Psp6I CCWGG 6 cut(s) 341, 406, 590, 1252, 1698, 1719
PspGI CCWGG 6 cut(s) 341, 406, 590, 1252, 1698, 1719
PspN4I GGNNCC 4 cut(s) 617, 777, 981, 1258
PspPI GGNCC 2 cut(s) 736, 776
PspPPI RGGWCCY 1 cut(s) 776
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 2 cut(s) 801, 1583
PsuI RGATCY 3 cut(s) 416, 1140, 1308
PsyI GACNNNGTC 1 cut(s) 1864
RsaI GTAC 5 cut(s) 8, 119, 430, 1155, 1690
RsaNI GTAC 5 cut(s) 7, 118, 429, 1154, 1689
SaqAI TTAA 9 cut(s) 360, 450, 966, 1071, 1104, 1167, 1497, 1727, 1800
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 4 cut(s) 416, 626, 1140, 1308
Sau96I GGNCC 2 cut(s) 736, 776
ScaI AGTACT 1 cut(s) 1690
SchI GAGTC 2 cut(s) 1085, 1300
ScrFI CCNGG 6 cut(s) 343, 408, 592, 1254, 1700, 1721
SduI GDGCHC 2 cut(s) 1370, 1896
SfaNI GCATC 6 cut(s) 356, 735, 859, 901, 1582, 1856
SfcI CTRYAG 2 cut(s) 1005, 1134
SinI GGWCC 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 780, 1312
SmoI CTYRAG 2 cut(s) 780, 1312
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 4 cut(s) 527, 576, 1521, 1760
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 4 cut(s) 209, 1051, 1417, 1712
SspMI CTAG 5 cut(s) 11, 231, 261, 351, 1596
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 6 cut(s) 341, 406, 590, 1252, 1698, 1719
StyI CCWWGG 2 cut(s) 230, 896
TaiI ACGT 5 cut(s) 79, 613, 1744, 1865, 1893
TaqI TCGA 3 cut(s) 471, 818, 1887
TasI AATT 4 cut(s) 527, 576, 1521, 1760
TatI WGTACW 2 cut(s) 428, 1688
TfiI GAWTC 4 cut(s) 92, 255, 542, 1543
Tru1I TTAA 9 cut(s) 360, 450, 966, 1071, 1104, 1167, 1497, 1727, 1800
Tru9I TTAA 9 cut(s) 360, 450, 966, 1071, 1104, 1167, 1497, 1727, 1800
TscAI CASTG 3 cut(s) 130, 540, 1739
TseFI GTSAC 3 cut(s) 178, 1858, 1866
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 3 cut(s) 178, 1858, 1866
TspDTI ATGAA 6 cut(s) 531, 855, 1535, 1563, 1671, 1923
TspGWI ACGGA 1 cut(s) 509
TspRI CASTG 3 cut(s) 130, 540, 1739
Tth111I GACNNNGTC 1 cut(s) 1864
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 4 cut(s) 527, 576, 1521, 1760
XmaJI CCTAGG 1 cut(s) 230
XmiI GTMKAC 2 cut(s) 47, 1772
XmnI GAANNNNTTC 1 cut(s) 620
XspI CTAG 5 cut(s) 11, 231, 261, 351, 1596
ZrmI AGTACT 1 cut(s) 1690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.