Rw2G032490
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000291
Physical Location & Seq
Forward (+)
53461527 .. 53462846
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G032490.1

Sequence Viewer

Length: 1281 bp
ATGGGTGAAGTTACAAAATTAGATATCGAAGCTCTCACGGCAGCGTTTACCGCTGCCATCAACACCATGAACAATCGGATGGAGCAGCAGATTGGAGAAATTCGTGGGTTGTTGGGAGAGAGAAACAACCACAACAACAACGATCGGAATAGAGGCAGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTAGAGAGGTTGTTGTTCATACTTCAGAATCTGAGTCTGAAGAAGAGATCATGCAAGATGAACCTCAAGGACAAGCTGACCAAGATTACAAAGTCAAAGCCGAAATTCCTTTCTTTTCGGGCAACTTGGGTGTAGAAGATTATCTAGATTGGCAGCTTCAGGTGGACAGGTTCTTTGAGATTATGGAAGTTCCTGAACACAAGCAGGTTAAGCATGTTGCATGGAGATTGAAGAGTACTGCTGCAATTTGGTGGGATAAATTGCAGAACACTCGAAAGAAGCAGAGGAAGCAGGGTAGGTTCTTGCCGGACGATTATGAGCAGATTTTGTATAGGTTGTATATTGAATGTGTCCAGGGAACTAGGACAGTGGCTGATTACACCACTGAGTTCTTACGCTACTCCGAGCATAATGAATTAGGAGAAACTGAGGGGCAGAAGGTGGCTCGATATGTCAGTGGGCTGAAGCCTTCCATTCAGGAGAAAATCGGGTTGCAAACTGTTCATACTATGGCAGAAACTTCAAACCTAGCATTGAAGGCAGAGTTGTTAGAGAAGCCTTCACGAGCTTCTTCTTTCCAGAGATATAACTACCAAAGGAGCACGGATTTAGTAAACGCCTCAACTGACAAGGGTAAACCCACACTGCAGAAAACAGAAGGTGCTTTTAGGGCTTCTAATCCTCCTTTTAAAGGGGCTGGCAGTTCCAGTGGTGCTCAAAACAGGGCCCCGAACCAGAGGTTTAATAATCCCTATGCTAGGCCTACAACAGAAGTTTGTTATCAATGCAACAAGCCTGGTCATAGATCTAATGTATGCCCTGAGAGGAGAACTGCCCTTATAGGCGATTATGATGAGGAAGAAGAAGAAGTTGGAAGAGATGGCGATTATGATGGGGCTGAGTTTGCGGAGGAGGAATCTCCTGAGAAGGTTAATATTGTGTTGCAGCGGGTTCTACTATGTCCTAAAGAAGAGGGGCAGCGGCGCAATATTTTCAGGTCACTTTGTTCCATTAATAACAAAGTGTGCAATTTAATTGTGGATAATGGAAGCTGCGAAAACTTTGTAGCCAAGAAACTGGTGGAGTATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

426

Amino Acids

48.7

Weight (kDa)

5.74

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AciI CCGC 4 cut(s) 51, 1094, 1135, 1168
AcsI RAATTY 2 cut(s) 99, 291
AcuI CTGAAG 4 cut(s) 195, 246, 329, 671
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 2 cut(s) 878, 945
AgsI TTSAA 4 cut(s) 418, 533, 711, 724
AjnI CCWGG 2 cut(s) 540, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 1041, 1073
AluBI AGCT 5 cut(s) 32, 263, 343, 755, 1239
AluI AGCT 5 cut(s) 32, 263, 343, 755, 1239
Alw21I GWGCWC 2 cut(s) 791, 904
AlwNI CAGNNNCTG 2 cut(s) 218, 560
AoxI GGCC 3 cut(s) 166, 912, 947
ApaI GGGCCC 1 cut(s) 916
ApeKI GCWGC 8 cut(s) 41, 53, 85, 340, 428, 1132, 1165, 1239
ApoI RAATTY 2 cut(s) 99, 291
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AseI ATTAAT 1 cut(s) 1200
AspLEI GCGC 1 cut(s) 1173
AspS9I GGNCC 2 cut(s) 912, 913
AsuHPI GGTGA 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 916
BanII GRGCYC 2 cut(s) 184, 916
BauI CACGAG 1 cut(s) 750
Bbv12I GWGCWC 2 cut(s) 791, 904
BbvI GCAGC 8 cut(s) 40, 53, 97, 352, 415, 1144, 1177, 1226
BccI CCATC 4 cut(s) 65, 73, 1061, 1073
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciT130I CCWGG 2 cut(s) 542, 984
BfaI CTAG 4 cut(s) 332, 549, 716, 945
BfmI CTRYAG 1 cut(s) 833
BfuAI ACCTGC 1 cut(s) 382
BglII AGATCT 1 cut(s) 992
BisI GCNGC 9 cut(s) 42, 54, 86, 341, 429, 1133, 1166, 1169, 1240
BlsI GCNGC 9 cut(s) 43, 55, 87, 342, 430, 1134, 1167, 1170, 1241
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 542, 984
BmgT120I GGNCC 2 cut(s) 912, 913
BmiI GGNNCC 3 cut(s) 183, 914, 915
BmrFI CCNGG 2 cut(s) 542, 984
BpuEI CTTGAG 1 cut(s) 237
BsaAI YACGTR 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 541
BsaXI ACNNNNNCTCC 1 cut(s) 1262
Bsc4I CCNNNNNNNGG 2 cut(s) 878, 945
Bse1I ACTGG 2 cut(s) 894, 1269
BseBI CCWGG 2 cut(s) 542, 984
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 2 cut(s) 878, 945
BseMII CTCAG 6 cut(s) 210, 564, 606, 999, 1077, 1101
BseNI ACTGG 2 cut(s) 894, 1269
BseRI GAGGAG 2 cut(s) 1027, 1112
BseSI GKGCMC 1 cut(s) 916
BseXI GCAGC 8 cut(s) 40, 53, 97, 352, 415, 1144, 1177, 1226
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 168, 914, 949
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 2 cut(s) 791, 904
BsiSI CCGG 1 cut(s) 494
BslI CCNNNNNNNGG 2 cut(s) 878, 945
BsnI GGCC 3 cut(s) 168, 914, 949
Bsp120I GGGCCC 1 cut(s) 912
Bsp1286I GDGCHC 4 cut(s) 184, 791, 904, 916
Bsp143I GATC 3 cut(s) 142, 234, 992
BspACI CCGC 4 cut(s) 51, 1094, 1135, 1168
BspANI GGCC 3 cut(s) 168, 914, 949
BspCNI CTCAG 6 cut(s) 211, 565, 607, 1000, 1078, 1102
BspLI GGNNCC 3 cut(s) 183, 914, 915
BspMAI CTGCAG 1 cut(s) 837
BspMI ACCTGC 1 cut(s) 382
BsrI ACTGG 2 cut(s) 894, 1269
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 3 cut(s) 142, 234, 992
BssSI CACGAG 1 cut(s) 750
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 2 cut(s) 542, 984
Bst4CI ACNGT 2 cut(s) 556, 688
Bst6I CTCTTC 4 cut(s) 225, 413, 1057, 1152
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 170, 886
BstDEI CTNAG 6 cut(s) 219, 573, 615, 1008, 1086, 1110
BstENI CCTNNNNNAGG 2 cut(s) 876, 943
BstF5I GGATG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 1173
BstKTI GATC 3 cut(s) 145, 237, 995
BstMBI GATC 3 cut(s) 142, 234, 992
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 7 cut(s) 38, 50, 397, 475, 725, 857, 1091
BstNI CCWGG 2 cut(s) 542, 984
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 2 cut(s) 540, 982
BstSFI CTRYAG 1 cut(s) 833
BstSLI GKGCMC 1 cut(s) 916
BstV1I GCAGC 8 cut(s) 40, 53, 97, 352, 415, 1144, 1177, 1226
BstX2I RGATCY 1 cut(s) 992
BstXI CCANNNNNNTGG 1 cut(s) 1264
BstYI RGATCY 1 cut(s) 992
BsuRI GGCC 3 cut(s) 168, 914, 949
BtsCI GGATG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 830
BtsIMutI CAGTG 5 cut(s) 561, 570, 649, 830, 901
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 2 cut(s) 170, 886
CaiI CAGNNNCTG 2 cut(s) 218, 560
CfoI GCGC 1 cut(s) 1173
Cfr13I GGNCC 2 cut(s) 912, 913
Csp6I GTAC 1 cut(s) 423
CviAII CATG 4 cut(s) 67, 238, 401, 408
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 6 cut(s) 219, 573, 615, 1008, 1086, 1110
DpnI GATC 3 cut(s) 144, 236, 994
DpnII GATC 3 cut(s) 142, 234, 992
DraI TTTAAA 1 cut(s) 877
Eam1104I CTCTTC 4 cut(s) 225, 413, 1057, 1152
EarI CTCTTC 4 cut(s) 225, 413, 1057, 1152
Eco147I AGGCCT 1 cut(s) 949
Eco24I GRGCYC 2 cut(s) 184, 916
Eco32I GATATC 1 cut(s) 25
Eco57I CTGAAG 4 cut(s) 195, 246, 329, 671
EcoNI CCTNNNNNAGG 2 cut(s) 876, 943
EcoO109I RGGNCCY 2 cut(s) 912, 913
EcoRII CCWGG 2 cut(s) 540, 982
EcoRV GATATC 1 cut(s) 25
EcoT38I GRGCYC 2 cut(s) 184, 916
FaeI CATG 4 cut(s) 70, 241, 404, 411
FatI CATG 4 cut(s) 66, 237, 400, 407
FauI CCCGC 1 cut(s) 1128
Fnu4HI GCNGC 9 cut(s) 42, 54, 86, 341, 429, 1133, 1166, 1169, 1240
FokI GGATG 1 cut(s) 91
FriOI GRGCYC 2 cut(s) 184, 916
Fsp4HI GCNGC 9 cut(s) 42, 54, 86, 341, 429, 1133, 1166, 1169, 1240
FspBI CTAG 4 cut(s) 332, 549, 716, 945
GlaI GCGC 1 cut(s) 1172
GluI GCNGC 9 cut(s) 42, 54, 86, 341, 429, 1133, 1166, 1169, 1240
HaeIII GGCC 3 cut(s) 168, 914, 949
HapII CCGG 1 cut(s) 494
HhaI GCGC 1 cut(s) 1173
Hin1II CATG 4 cut(s) 70, 241, 404, 411
Hin6I GCGC 1 cut(s) 1171
HinP1I GCGC 1 cut(s) 1171
HinfI GANTC 3 cut(s) 215, 221, 1103
HpaII CCGG 1 cut(s) 494
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 4 cut(s) 48, 352, 802, 824
Hpy188I TCNGA 6 cut(s) 78, 147, 214, 220, 226, 592
Hpy188III TCNNGA 6 cut(s) 332, 380, 665, 750, 766, 1109
Hpy8I GTNNAC 4 cut(s) 48, 352, 802, 824
HpyAV CCTTC 7 cut(s) 155, 619, 666, 718, 756, 839, 1108
HpyCH4III ACNGT 2 cut(s) 556, 688
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 9 cut(s) 241, 407, 431, 451, 682, 835, 975, 1132, 1215
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 50, 397, 475, 725, 857, 1091
HpyF3I CTNAG 6 cut(s) 219, 573, 615, 1008, 1086, 1110
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 4 cut(s) 70, 241, 404, 411
HspAI GCGC 1 cut(s) 1171
Kzo9I GATC 3 cut(s) 142, 234, 992
LmnI GCTCC 3 cut(s) 82, 187, 786
Lsp1109I GCAGC 8 cut(s) 40, 53, 97, 352, 415, 1144, 1177, 1226
MaeI CTAG 4 cut(s) 332, 549, 716, 945
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 2 cut(s) 10, 1185
MalI GATC 3 cut(s) 144, 236, 994
MboI GATC 3 cut(s) 142, 234, 992
MflI RGATCY 1 cut(s) 992
MhlI GDGCHC 4 cut(s) 184, 791, 904, 916
MluCI AATT 8 cut(s) 17, 99, 291, 432, 446, 602, 1216, 1221
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 1039
MseI TTAA 6 cut(s) 396, 876, 930, 1119, 1200, 1220
MspA1I CMGCKG 3 cut(s) 53, 1135, 1168
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 2 cut(s) 542, 984
MvaI CCWGG 2 cut(s) 542, 984
MwoI GCNNNNNNNGC 7 cut(s) 38, 50, 397, 475, 725, 857, 1091
NdeII GATC 3 cut(s) 142, 234, 992
NlaIII CATG 4 cut(s) 70, 241, 404, 411
NlaIV GGNNCC 3 cut(s) 183, 914, 915
NmuCI GTSAC 1 cut(s) 1185
NspI RCATGY 1 cut(s) 404
PceI AGGCCT 1 cut(s) 949
PfeI GAWTC 2 cut(s) 215, 1103
PkrI GCNGC 9 cut(s) 43, 55, 87, 342, 430, 1134, 1167, 1170, 1241
Ple19I CGATCG 1 cut(s) 145
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Ppu21I YACGTR 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 1200
Psp6I CCWGG 2 cut(s) 540, 982
PspGI CCWGG 2 cut(s) 540, 982
PspN4I GGNNCC 3 cut(s) 183, 914, 915
PspOMI GGGCCC 1 cut(s) 912
PspPI GGNCC 2 cut(s) 912, 913
PstI CTGCAG 1 cut(s) 837
PstNI CAGNNNCTG 2 cut(s) 218, 560
PsuI RGATCY 1 cut(s) 992
PvuI CGATCG 1 cut(s) 145
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
SaqAI TTAA 6 cut(s) 396, 876, 930, 1119, 1200, 1220
SatI GCNGC 9 cut(s) 42, 54, 86, 341, 429, 1133, 1166, 1169, 1240
Sau3AI GATC 3 cut(s) 142, 234, 992
Sau96I GGNCC 2 cut(s) 912, 913
ScaI AGTACT 1 cut(s) 424
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 2 cut(s) 542, 984
SduI GDGCHC 4 cut(s) 184, 791, 904, 916
SfcI CTRYAG 1 cut(s) 833
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 8 cut(s) 17, 99, 291, 432, 446, 602, 1216, 1221
SseBI AGGCCT 1 cut(s) 949
SsiI CCGC 4 cut(s) 51, 1094, 1135, 1168
SspI AATATT 2 cut(s) 1123, 1177
SspMI CTAG 4 cut(s) 332, 549, 716, 945
StuI AGGCCT 1 cut(s) 949
StyD4I CCNGG 2 cut(s) 540, 982
TaaI ACNGT 2 cut(s) 556, 688
TaiI ACGT 1 cut(s) 190
TaqI TCGA 3 cut(s) 27, 460, 634
TasI AATT 8 cut(s) 17, 99, 291, 432, 446, 602, 1216, 1221
TatI WGTACW 1 cut(s) 422
TauI GCSGC 1 cut(s) 1171
TfiI GAWTC 2 cut(s) 215, 1103
Tru1I TTAA 6 cut(s) 396, 876, 930, 1119, 1200, 1220
Tru9I TTAA 6 cut(s) 396, 876, 930, 1119, 1200, 1220
TscAI CASTG 5 cut(s) 561, 577, 649, 837, 901
TseFI GTSAC 1 cut(s) 1185
TseI GCWGC 8 cut(s) 41, 53, 85, 340, 428, 1132, 1165, 1239
Tsp45I GTSAC 1 cut(s) 1185
TspDTI ATGAA 5 cut(s) 83, 194, 261, 615, 680
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 5 cut(s) 561, 577, 649, 837, 901
VspI ATTAAT 1 cut(s) 1200
XagI CCTNNNNNAGG 2 cut(s) 876, 943
XapI RAATTY 2 cut(s) 99, 291
XbaI TCTAGA 1 cut(s) 331
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 1264
XspI CTAG 4 cut(s) 332, 549, 716, 945
ZrmI AGTACT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.