Rw4G018370
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000291
Physical Location & Seq
Reverse (-)
40851500 .. 40853779
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018370.1

Sequence Viewer

Length: 2154 bp
ATGGGTGAAGTTACGAAATCTGATATTGAAGCTCTTACAGCAGCGTTTACCGCTGCCATCAATTCCATGAATAATCAGATTGGAGAAATTCGTGGATTGTTGGGTGAGAGGAACAACAACAACAACAACAACAATAATCGGTGTAGAGATGGGGAAGGAGGCCAGCGAGTTAGGGCTCCACGTGGTGAAGTTGTTGATAATACATCAGAATCTGAGCCTGAAGAAGAAATTTTACAACAAGAGCAACATGGACAAGCTGACCAGGATTACAAAGTCAAGGCCGAAATTCCTTTCTTTTCTGGCAATTTGGGTGTAGAAGATTATTTGGATTGGCAGCTTCAGGTGGACAGATTCTTTGAGATTATGGAAGTGCCTGAACACAAGCAAGTTAAGCATGTTGCCTGGAGATTGAAGAGTACTGCTGCAGTATGGTGGGATAAGTTGCAGAACACTCGAAAGAAGCAGAGGAAGCAGGGTGTTAGAACATGGCGAAGAATGAAGCAGTTGATGATGGAGAGGTTCTTACCAGATGATTATGAGCAGATTCTATATAGGCTGTATATTGAATGTGTTCAGGGAACTAGGACGGTGGCTGATTATACGGCTGAGTTCTTACGCTATTCAGAGCGTAATGAATTGGGAGAAACTGAAGGCCAGAAGGTGGCTCGCTATATCAGTGGGCTGAAGCCTTCCATTCAGGAGAGAATTGGGTTACAAACTGTTCATACTATGGCCGAAGTGACAAACCTAGCATTGAAAGCAGAGTTGTTGGAGAAACCTTCACGAGCTTCTTCTTTCCAGAGGTATAACTACCAAAGGAGTGCAGATTTGGTTAATGCCTCAACTGCCAAGGGTACAACTACGCTGCAGAGAGCAGAAAACGCCTTTAAAGCTTCTAATCCTCCTTTTAAAGGCGCGGGCAGTTCTAACAATTCTAGTGGTCCTGGGCATAGATCTAATGTGTGTCCTGAGAGGAGACAAACTGCCCTTATAGATGATTATGATGAGGATGAAGAAGAAGTTAGGAGAGATGGCGATTATGATGGAGCTGAGTTTGCGGAGGAGGAATCCCCTGAGAAGGTTAACATTGTGTTGCAGCGGGTTCTACTATGTCCTAAAGAAGAGGGGCAGCGGCGCAATATTTTCAGGTCACTTTGTTCCATTAATAACAAAGTGTGTAATTTAATTGTGGATAATGGGAGCTGCGAAAATTTTGTAGCCAAGAAACTGGTGGAGTATTTGCAGTTACCGGCGCAGCCTCATGAGGCACCTTATTCCCTCGGGTGGGTCAAGAAAGGTCCACAACATTATAAAGATGAAGTTTTGTGCGACATTATTGATATGGATGCTTGTCATATTTTGTTTGGCCGACCTTGGCAATATGATGTGGATGTTACTTATAAAGGCAGGGACAATGTGATGTTGTTTATGTGGAATAACCATAAAATTGCTATGGCTCCTGTGTGTCAATTTGAGAAATCTGATGTGAAGAAAGGGGAGAGTTTCCTGACCTTATCTAGCAGTGAACTTGAGATGGAGAGGGCCTTTAAAGAATCTGAGGTTTTCTGTCCAGTGGTGATAAAGGGGTTGTTGTCTGCAGAAAAGGAAGAAGTGGTGATTCCCAAAGAAGTACAGGACATGTTGGGAGATTTTGAAGAGTTGATCTCGGATGAGTTGCCCAACGAGCTGCCACCTATGAGAGACATTCAACATCAGATTGATTTGGTGCCTGGAGCTAGCTTGCCCAATCTGCCACATTACCGAATGAGTCCCAAGGAGAATGAGATTTTGAGAGAGCAGATTGAAGACTTGTTGAAAAAAGGGTTCATTCGAGAGAGTATGAGTCCTTGTGCAGTTCCAGTCCTCCTTGTTCCTAAGAAGGGCAATCAATGGCGGATGTGTGTTGATAGCAGGGCCATTAACAAGATAACTGTGAAGTACAGGTTTCCTATTCCTCGTTTGGAAGACATGCTTGATGAGCTAGAAGGTTCCAAAGTGTTTACCAAGATAGACCTTCGAAGTGGATATCACCAGATTCGAATCAAGCCAGGGGATGAATGGAAGACAGCTTTTAAGAGCAAGGATGGCTTGTATGAGGCTTATGAACCAGGTTCTTCGCCCTTTTACAGGTTCCTTTGTAGTAGTGTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

717

Amino Acids

82.27

Weight (kDa)

5.47

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 120 - 258 1.7e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 132 - 230 2.7e-13 Retrotransposon gag protein
RVT_1 PF00078 624 - 694 5.7e-13 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1311, 1401
AccB1I GGYRCC 2 cut(s) 1267, 1726
AccB7I CCANNNNNTGG 1 cut(s) 661
AccII CGCG 1 cut(s) 917
AciI CCGC 6 cut(s) 51, 917, 1058, 1099, 1132, 1894
AcoI YGGCCR 2 cut(s) 732, 1366
AcsI RAATTY 4 cut(s) 87, 228, 285, 1210
AcuI CTGAAG 4 cut(s) 240, 323, 669, 704
AcvI CACGTG 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 185
AfaI GTAC 4 cut(s) 418, 856, 1632, 1940
AfiI CCNNNNNNNGG 7 cut(s) 661, 911, 1078, 1284, 1285, 1880, 2127
AflIII ACRYGT 1 cut(s) 1638
AgsI TTSAA 8 cut(s) 29, 412, 566, 757, 1655, 1709, 1805, 1816
AjnI CCWGG 6 cut(s) 261, 401, 943, 1729, 2047, 2107
Alw26I GTCTC 2 cut(s) 970, 1695
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 1280
AoxI GGCC 7 cut(s) 160, 279, 652, 732, 1366, 1542, 1914
ApoI RAATTY 4 cut(s) 87, 228, 285, 1210
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AseI ATTAAT 1 cut(s) 1164
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 3 cut(s) 917, 1137, 1255
AspS9I GGNCC 4 cut(s) 941, 1298, 1542, 1914
AsuHPI GGTGA 6 cut(s) 17, 116, 197, 1588, 1627, 2021
AsuII TTCGAA 2 cut(s) 2017, 2038
AsuNHI GCTAGC 1 cut(s) 1736
AvaI CYCGRG 1 cut(s) 1280
AvaII GGWCC 2 cut(s) 941, 1298
BanI GGYRCC 2 cut(s) 1267, 1726
BanII GRGCYC 1 cut(s) 178
BarI GAAGNNNNNNTAC 2 cut(s) 216, 248
BauI CACGAG 1 cut(s) 783
BbrPI CACGTG 1 cut(s) 182
BbsI GAAGAC 3 cut(s) 1812, 1971, 2069
BccI CCATC 7 cut(s) 65, 143, 505, 1025, 1037, 1528, 2078
BceAI ACGGC 1 cut(s) 618
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 6 cut(s) 263, 403, 945, 1731, 2049, 2109
BcoDI GTCTC 2 cut(s) 970, 1695
BfaI CTAG 6 cut(s) 582, 749, 936, 1518, 1737, 1982
BfmI CTRYAG 3 cut(s) 423, 866, 1596
BglII AGATCT 1 cut(s) 953
BmcAI AGTACT 1 cut(s) 418
Bme1390I CCNGG 6 cut(s) 263, 403, 945, 1731, 2049, 2109
Bme18I GGWCC 2 cut(s) 941, 1298
BmeT110I CYCGRG 1 cut(s) 1280
BmgT120I GGNCC 4 cut(s) 941, 1298, 1542, 1914
BmiI GGNNCC 6 cut(s) 177, 1269, 1458, 1728, 1990, 2132
BmrFI CCNGG 6 cut(s) 263, 403, 945, 1731, 2049, 2109
BmsI GCATC 1 cut(s) 1336
BmtI GCTAGC 1 cut(s) 1740
BpiI GAAGAC 3 cut(s) 1812, 1971, 2069
BplI GAGNNNNNCTC 2 cut(s) 1649, 1681
BpmI CTGGAG 2 cut(s) 424, 1752
Bpu14I TTCGAA 2 cut(s) 2017, 2038
BpuEI CTTGAG 1 cut(s) 1550
BsaAI YACGTR 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 2039
BsaJI CCNNGG 6 cut(s) 849, 944, 1279, 1373, 1773, 2048
Bsc4I CCNNNNNNNGG 7 cut(s) 661, 911, 1078, 1284, 1285, 1880, 2127
Bse118I RCCGGY 1 cut(s) 1249
Bse1I ACTGG 3 cut(s) 1233, 1571, 1859
Bse8I GATNNNNATC 1 cut(s) 2039
BseBI CCWGG 6 cut(s) 263, 403, 945, 1731, 2049, 2109
BseDI CCNNGG 6 cut(s) 849, 944, 1279, 1373, 1773, 2048
BseGI GGATG 7 cut(s) 1015, 1351, 1396, 1675, 1902, 2059, 2089
BseJI GATNNNNATC 1 cut(s) 2039
BseLI CCNNNNNNNGG 7 cut(s) 661, 911, 1078, 1284, 1285, 1880, 2127
BseMII CTCAG 6 cut(s) 204, 597, 960, 1041, 1065, 1548
BseNI ACTGG 3 cut(s) 1233, 1571, 1859
BseRI GAGGAG 2 cut(s) 988, 1076
BsgI GTGCAG 2 cut(s) 843, 1872
Bsh1236I CGCG 1 cut(s) 917
BshFI GGCC 7 cut(s) 162, 281, 654, 734, 1368, 1544, 1916
BshNI GGYRCC 2 cut(s) 1267, 1726
BsiHKCI CYCGRG 1 cut(s) 1280
BsiSI CCGG 1 cut(s) 1250
BslFI GGGAC 2 cut(s) 1424, 1755
BslI CCNNNNNNNGG 7 cut(s) 661, 911, 1078, 1284, 1285, 1880, 2127
BsmAI GTCTC 2 cut(s) 970, 1695
BsmFI GGGAC 2 cut(s) 1424, 1755
BsnI GGCC 7 cut(s) 162, 281, 654, 734, 1368, 1544, 1916
BsoBI CYCGRG 1 cut(s) 1280
Bsp119I TTCGAA 2 cut(s) 2017, 2038
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 953, 1662
BspACI CCGC 6 cut(s) 51, 917, 1058, 1099, 1132, 1894
BspANI GGCC 7 cut(s) 162, 281, 654, 734, 1368, 1544, 1916
BspCNI CTCAG 6 cut(s) 205, 598, 961, 1042, 1066, 1549
BspFNI CGCG 1 cut(s) 917
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 6 cut(s) 177, 1269, 1458, 1728, 1990, 2132
BspMAI CTGCAG 3 cut(s) 427, 870, 1600
BspOI GCTAGC 1 cut(s) 1740
BspT104I TTCGAA 2 cut(s) 2017, 2038
BspT107I GGYRCC 2 cut(s) 1267, 1726
BsrFI RCCGGY 1 cut(s) 1249
BsrI ACTGG 3 cut(s) 1233, 1571, 1859
BssAI RCCGGY 1 cut(s) 1249
BssECI CCNNGG 6 cut(s) 849, 944, 1279, 1373, 1773, 2048
BssMI GATC 2 cut(s) 953, 1662
BssSI CACGAG 1 cut(s) 783
BssT1I CCWWGG 3 cut(s) 849, 1373, 1773
Bst2BI CACGAG 1 cut(s) 783
Bst2UI CCWGG 6 cut(s) 263, 403, 945, 1731, 2049, 2109
Bst4CI ACNGT 3 cut(s) 589, 721, 1933
Bst6I CTCTTC 3 cut(s) 407, 1116, 1650
BstBAI YACGTR 1 cut(s) 182
BstBI TTCGAA 2 cut(s) 2017, 2038
BstC8I GCNNGC 5 cut(s) 164, 667, 919, 1738, 1742
BstDEI CTNAG 7 cut(s) 213, 606, 969, 1050, 1074, 1557, 1875
BstENI CCTNNNNNAGG 2 cut(s) 909, 2125
BstF5I GGATG 7 cut(s) 1015, 1351, 1396, 1675, 1902, 2059, 2089
BstFNI CGCG 1 cut(s) 917
BstHHI GCGC 3 cut(s) 917, 1137, 1255
BstKTI GATC 2 cut(s) 956, 1665
BstMAI GTCTC 2 cut(s) 970, 1695
BstMBI GATC 2 cut(s) 953, 1662
BstNI CCWGG 6 cut(s) 263, 403, 945, 1731, 2049, 2109
BstNSI RCATGY 3 cut(s) 398, 1642, 1972
BstSCI CCNGG 6 cut(s) 261, 401, 943, 1729, 2047, 2107
BstSFI CTRYAG 3 cut(s) 423, 866, 1596
BstUI CGCG 1 cut(s) 917
BstV2I GAAGAC 3 cut(s) 1812, 1971, 2069
BstX2I RGATCY 1 cut(s) 953
BstXI CCANNNNNNTGG 1 cut(s) 1228
BstYI RGATCY 1 cut(s) 953
BsuRI GGCC 7 cut(s) 162, 281, 654, 734, 1368, 1544, 1916
BtsCI GGATG 7 cut(s) 1015, 1351, 1396, 1675, 1902, 2059, 2089
BtsI GCAGTG 1 cut(s) 1528
BtsIMutI CAGTG 3 cut(s) 682, 1528, 1578
Cac8I GCNNGC 5 cut(s) 164, 667, 919, 1738, 1742
CaiI CAGNNNCTG 1 cut(s) 212
CciI TCATGA 1 cut(s) 1261
CfoI GCGC 3 cut(s) 917, 1137, 1255
Cfr10I RCCGGY 1 cut(s) 1249
Cfr13I GGNCC 4 cut(s) 941, 1298, 1542, 1914
CsiI ACCWGGT 1 cut(s) 2107
Csp6I GTAC 4 cut(s) 417, 855, 1631, 1939
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviAII CATG 7 cut(s) 67, 248, 395, 486, 1262, 1639, 1969
CviQI GTAC 4 cut(s) 417, 855, 1631, 1939
DdeI CTNAG 7 cut(s) 213, 606, 969, 1050, 1074, 1557, 1875
DpnI GATC 2 cut(s) 955, 1664
DpnII GATC 2 cut(s) 953, 1662
DraI TTTAAA 3 cut(s) 889, 910, 1549
DraIII CACNNNGTG 1 cut(s) 185
EaeI YGGCCR 2 cut(s) 732, 1366
Eam1104I CTCTTC 3 cut(s) 407, 1116, 1650
EarI CTCTTC 3 cut(s) 407, 1116, 1650
EciI GGCGGA 1 cut(s) 1909
Eco130I CCWWGG 3 cut(s) 849, 1373, 1773
Eco24I GRGCYC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 2027
Eco47I GGWCC 2 cut(s) 941, 1298
Eco57I CTGAAG 4 cut(s) 240, 323, 669, 704
Eco72I CACGTG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 1280
EcoNI CCTNNNNNAGG 2 cut(s) 909, 2125
EcoO109I RGGNCCY 1 cut(s) 1542
EcoRII CCWGG 6 cut(s) 261, 401, 943, 1729, 2047, 2107
EcoRV GATATC 1 cut(s) 2027
EcoT14I CCWWGG 3 cut(s) 849, 1373, 1773
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 3 cut(s) 849, 1373, 1773
FaeI CATG 7 cut(s) 70, 251, 398, 489, 1265, 1642, 1972
FalI AAGNNNNNCTT 4 cut(s) 1956, 1988, 2072, 2104
FaqI GGGAC 2 cut(s) 1424, 1755
FatI CATG 7 cut(s) 66, 247, 394, 485, 1261, 1638, 1968
FauI CCCGC 2 cut(s) 910, 1092
FokI GGATG 7 cut(s) 1022, 1358, 1403, 1682, 1909, 2066, 2096
FriOI GRGCYC 1 cut(s) 178
FspBI CTAG 6 cut(s) 582, 749, 936, 1518, 1737, 1982
GlaI GCGC 3 cut(s) 916, 1136, 1254
GsuI CTGGAG 2 cut(s) 424, 1752
HaeIII GGCC 7 cut(s) 162, 281, 654, 734, 1368, 1544, 1916
HapII CCGG 1 cut(s) 1250
HhaI GCGC 3 cut(s) 917, 1137, 1255
Hin1II CATG 7 cut(s) 70, 251, 398, 489, 1265, 1642, 1972
Hin6I GCGC 3 cut(s) 915, 1135, 1253
HinP1I GCGC 3 cut(s) 915, 1135, 1253
HincII GTYRAC 1 cut(s) 1084
HindII GTYRAC 1 cut(s) 1084
HindIII AAGCTT 1 cut(s) 891
HpaI GTTAAC 1 cut(s) 1084
HpaII CCGG 1 cut(s) 1250
HphI GGTGA 6 cut(s) 17, 116, 197, 1588, 1627, 2021
Hpy166II GTNNAC 6 cut(s) 48, 346, 1084, 1301, 1526, 2001
Hpy188I TCNGA 9 cut(s) 22, 78, 208, 214, 625, 1483, 1558, 1669, 1716
Hpy188III TCNNGA 8 cut(s) 698, 783, 799, 968, 1262, 1291, 1507, 1832
Hpy8I GTNNAC 6 cut(s) 48, 346, 1084, 1301, 1526, 2001
HpyAV CCTTC 9 cut(s) 149, 644, 652, 699, 789, 1072, 1873, 1979, 2024
HpyCH4III ACNGT 3 cut(s) 589, 721, 1933
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 8 cut(s) 425, 445, 824, 868, 1096, 1243, 1598, 1853
HpyF3I CTNAG 7 cut(s) 213, 606, 969, 1050, 1074, 1557, 1875
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 7 cut(s) 70, 251, 398, 489, 1265, 1642, 1972
HspAI GCGC 3 cut(s) 915, 1135, 1253
KspAI GTTAAC 1 cut(s) 1084
Kzo9I GATC 2 cut(s) 953, 1662
LmnI GCTCC 5 cut(s) 181, 1046, 1200, 1462, 1733
LweI GCATC 1 cut(s) 1336
MabI ACCWGGT 1 cut(s) 2107
MaeI CTAG 6 cut(s) 582, 749, 936, 1518, 1737, 1982
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 6 cut(s) 10, 711, 739, 1149, 1245, 1393
MalI GATC 2 cut(s) 955, 1664
MboI GATC 2 cut(s) 953, 1662
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 1 cut(s) 178
MlyI GAGTC 2 cut(s) 1777, 1852
MmeI TCCRAC 1 cut(s) 750
MroXI GAANNNNTTC 1 cut(s) 570
MspA1I CMGCKG 3 cut(s) 53, 1099, 1132
MspI CCGG 1 cut(s) 1250
MspR9I CCNGG 6 cut(s) 263, 403, 945, 1731, 2049, 2109
MvaI CCWGG 6 cut(s) 263, 403, 945, 1731, 2049, 2109
MvnI CGCG 1 cut(s) 917
NdeII GATC 2 cut(s) 953, 1662
NheI GCTAGC 1 cut(s) 1736
NlaIII CATG 7 cut(s) 70, 251, 398, 489, 1265, 1642, 1972
NlaIV GGNNCC 6 cut(s) 177, 1269, 1458, 1728, 1990, 2132
NmuCI GTSAC 2 cut(s) 739, 1149
NspI RCATGY 3 cut(s) 398, 1642, 1972
NspV TTCGAA 2 cut(s) 2017, 2038
PagI TCATGA 1 cut(s) 1261
PciI ACATGT 1 cut(s) 1638
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 8 cut(s) 209, 351, 544, 1067, 1553, 1618, 2035, 2040
PflMI CCANNNNNTGG 1 cut(s) 661
PleI GAGTC 2 cut(s) 1776, 1851
PmaCI CACGTG 1 cut(s) 182
PmlI CACGTG 1 cut(s) 182
PpsI GAGTC 2 cut(s) 1776, 1851
Ppu21I YACGTR 1 cut(s) 182
PscI ACATGT 1 cut(s) 1638
PshBI ATTAAT 1 cut(s) 1164
PsiI TTATAA 2 cut(s) 1311, 1401
Psp6I CCWGG 6 cut(s) 261, 401, 943, 1729, 2047, 2107
PspCI CACGTG 1 cut(s) 182
PspGI CCWGG 6 cut(s) 261, 401, 943, 1729, 2047, 2107
PspN4I GGNNCC 6 cut(s) 177, 1269, 1458, 1728, 1990, 2132
PspPI GGNCC 4 cut(s) 941, 1298, 1542, 1914
PstI CTGCAG 3 cut(s) 427, 870, 1600
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 953
RsaI GTAC 4 cut(s) 418, 856, 1632, 1940
RsaNI GTAC 4 cut(s) 417, 855, 1631, 1939
Sau3AI GATC 2 cut(s) 953, 1662
Sau96I GGNCC 4 cut(s) 941, 1298, 1542, 1914
ScaI AGTACT 1 cut(s) 418
SchI GAGTC 2 cut(s) 1777, 1852
ScrFI CCNGG 6 cut(s) 263, 403, 945, 1731, 2049, 2109
SduI GDGCHC 1 cut(s) 178
SexAI ACCWGGT 1 cut(s) 2107
SfaNI GCATC 1 cut(s) 1336
SfcI CTRYAG 3 cut(s) 423, 866, 1596
SfuI TTCGAA 2 cut(s) 2017, 2038
SinI GGWCC 2 cut(s) 941, 1298
SmlI CTYRAG 1 cut(s) 1529
SmoI CTYRAG 1 cut(s) 1529
SsiI CCGC 6 cut(s) 51, 917, 1058, 1099, 1132, 1894
SspI AATATT 1 cut(s) 1141
SspMI CTAG 6 cut(s) 582, 749, 936, 1518, 1737, 1982
StyD4I CCNGG 6 cut(s) 261, 401, 943, 1729, 2047, 2107
StyI CCWWGG 3 cut(s) 849, 1373, 1773
TaaI ACNGT 3 cut(s) 589, 721, 1933
TaiI ACGT 1 cut(s) 184
TaqI TCGA 4 cut(s) 454, 1831, 2017, 2038
TatI WGTACW 3 cut(s) 416, 1630, 1938
TauI GCSGC 1 cut(s) 1135
TfiI GAWTC 8 cut(s) 209, 351, 544, 1067, 1553, 1618, 2035, 2040
TscAI CASTG 3 cut(s) 682, 1528, 1578
TseFI GTSAC 2 cut(s) 739, 1149
Tsp45I GTSAC 2 cut(s) 739, 1149
TspDTI ATGAA 9 cut(s) 83, 512, 648, 713, 1026, 1332, 1816, 2070, 2118
TspRI CASTG 3 cut(s) 682, 1528, 1578
Van91I CCANNNNNTGG 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 941, 1298
VspI ATTAAT 1 cut(s) 1164
XagI CCTNNNNNAGG 2 cut(s) 909, 2125
XapI RAATTY 4 cut(s) 87, 228, 285, 1210
XceI RCATGY 3 cut(s) 398, 1642, 1972
XcmI CCANNNNNNNNNTGG 2 cut(s) 1228, 2055
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 6 cut(s) 582, 749, 936, 1518, 1737, 1982
ZrmI AGTACT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.