RchiOBHm_Chr5g0075641

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000291
Physical Location & Seq
Forward (+)
81427612 .. 81427902
291 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35035

Sequence Viewer

Length: 291 bp
ATGGATTTTGTGTTGGGATTACCCCGTACCCAAAGGGGTGTGGATTCAGTGTTTGTGGTAGTTGACAGGTTCTCCAAGATGGAGCATTTCATCGCATGTAAGAAGACTGCTGATGCTTCTAATATAGCCAAACTGTTCTTCAGGGAGGTGGTTCGTTTGCATGGAGTACCCAAGTCCATTACTTCTGATAGAGACACAAAGTTCCTTAGCCATTTCTGGATTACCTTGTGGAGGATGTTTGGAACAGCTTTGAACCGTAGCAGCACAGCTCATCCTCAAACTGATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

96

Amino Acids

10.97

Weight (kDa)

10.0

Isoelectric Point (pI)

22.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rve PF00665 1 - 92 6.2e-07 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000291)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00860
fragaria_vesca FvH4_1g23712 FvH4_1g29809 FvH4_1g29810 FvH4_2g02661 FvH4_2g13451 FvH4_2g17921 FvH4_2g17922 FvH4_2g19251 FvH4_2g19252 FvH4_2g28221 FvH4_2g35961 FvH4_3g10372 FvH4_3g12461 FvH4_3g12461 FvH4_3g27861 FvH4_3g34591 FvH4_3g40201 FvH4_3g44612 FvH4_4g08352 FvH4_4g12251 FvH4_4g12742 FvH4_4g13904 FvH4_4g14287 FvH4_4g15243 FvH4_4g24071 FvH4_4g33448 FvH4_5g21912 FvH4_5g39371 FvH4_6g14992 FvH4_6g15221 FvH4_6g20603 FvH4_6g31093 FvH4_6g32372 FvH4_6g33012
malus_domestica MD11G1009100.v1.1 MD13G1145000.v1.1 MD16G1138700.v1.1
prunus_persica Prupe.5G246300_v2.0.a1 Prupe.7G034800_v2.0.a1 Prupe.8G084500_v2.0.a1
pyrus_communis pycom01g18240 pycom04g00330 pycom05g09010 pycom06g01670 pycom06g01690 pycom06g07180 pycom06g11620 pycom10g05720 pycom1134g00040 pycom1134g00060 pycom12486g00010 pycom12555g00230 pycom13g21670 pycom13g23130 pycom13g23140 pycom14g10580
rosa_chinensis RchiOBHm_Chr1g0330691 RchiOBHm_Chr2g0106171 RchiOBHm_Chr2g0134731 RchiOBHm_Chr2g0142791 RchiOBHm_Chr2g0149861 RchiOBHm_Chr3g0452401 RchiOBHm_Chr3g0461881 RchiOBHm_Chr4g0401341 RchiOBHm_Chr5g0075641 RchiOBHm_Chr6g0265961 RchiOBHm_Chr7g0200201 RchiOBHm_Chr7g0237811
rosa_laevigata RLG00000002773
rosa_multiflora Rmu_co8037806.1_g000001 Rmu_co8445989.1_g000001 Rmu_sc0000745.1_g000039 Rmu_sc0004448.1_g000029 Rmu_sc0004488.1_g000002 Rmu_sc0004591.1_g000018 Rmu_sc0005065.1_g000030 Rmu_sc0005150.1_g000005 Rmu_sc0005654.1_g000011 Rmu_sc0006986.1_g000016
rosa_roxburghii Rroxscaffold_164G00436490 Rroxscaffold_175G00432490 Rroxscaffold_1G00059440 Rroxscaffold_1G00064410 Rroxscaffold_2G00100310 Rroxscaffold_2G00128170 Rroxscaffold_3G00239420 Rroxscaffold_3G00264970 Rroxscaffold_3G00271550 Rroxscaffold_4G00300240 Rroxscaffold_5G00385050 Rroxscaffold_6G00399720
rosa_rugosa Rorug02G0252200
rosa_samantha Rh2DG251900 Rh7CG329900
rosa_wichuraiana Rw0G004800 Rw1G000850 Rw1G022350 Rw2G027030 Rw2G027760 Rw2G028410 Rw2G029130 Rw2G029390 Rw2G032490 Rw2G039460 Rw2G047800 Rw2G050340 Rw3G026430 Rw4G018370 Rw4G030750 Rw4G033140 Rw5G011950 Rw5G012010 Rw5G029280 Rw5G040190 Rw5G044570 Rw5G048240 Rw6G000340 Rw6G010140 Rw6G026480 Rw7G033750 Rw7G037250 Rw7G042080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 124
AfaI GTAC 2 cut(s) 28, 168
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 2 cut(s) 248, 269
AluI AGCT 2 cut(s) 248, 269
Alw26I GTCTC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 73, 278
BcoDI GTCTC 1 cut(s) 186
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 240, 271
BseLI CCNNNNNNNGG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 135, 257
BstDEI CTNAG 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 229
BstF5I GGATG 2 cut(s) 240, 271
BstMAI GTCTC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 1 cut(s) 110
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 240, 271
BtsIMutI CAGTG 1 cut(s) 54
Csp6I GTAC 2 cut(s) 27, 167
CviAII CATG 2 cut(s) 96, 161
CviJI RGCY 4 cut(s) 128, 210, 248, 269
CviKI_1 RGCY 4 cut(s) 128, 210, 248, 269
CviQI GTAC 2 cut(s) 27, 167
DdeI CTNAG 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 229
FaeI CATG 2 cut(s) 99, 164
FaiI YATR 3 cut(s) 97, 125, 162
FatI CATG 2 cut(s) 95, 160
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 2 cut(s) 247, 258
Fsp4HI GCNGC 1 cut(s) 262
GluI GCNGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 99, 164
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 135, 257
HpyCH4V TGCA 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 2 cut(s) 99, 164
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 3 cut(s) 52, 127, 202
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 103
MboII GAAGA 2 cut(s) 115, 130
MnlI CCTC 3 cut(s) 139, 225, 285
NlaIII CATG 2 cut(s) 99, 164
NspI RCATGY 1 cut(s) 99
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 263
RsaI GTAC 2 cut(s) 28, 168
RsaNI GTAC 2 cut(s) 27, 167
SatI GCNGC 1 cut(s) 262
SetI ASST 5 cut(s) 71, 150, 227, 250, 271
SfaNI GCATC 1 cut(s) 103
SgeI CNNG 9 cut(s) 36, 79, 88, 108, 154, 173, 184, 229, 238
TaaI ACNGT 2 cut(s) 135, 257
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 1 cut(s) 54
TseI GCWGC 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 79
TspRI CASTG 1 cut(s) 54
XagI CCTNNNNNAGG 1 cut(s) 229
XceI RCATGY 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.